Lcy06g011620 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g011620
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr06: 13632213 .. 13633232 (-)
RNA-Seq ExpressionLcy06g011620
SyntenyLcy06g011620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAGAGCAAAGGCAAAGCTGGGATGAGGTTCAGAGATCTCCACGACTTCAACAAAGTTATGCTAGCAAAAGTTAGCTGGAGAGTCATTAAAAACCTAGACAACTTGATGTCCAAAATTTTGAGAGGAAGGTACTTCCAAGATGGGGATTTTCTTAAAGCCAAGCTAGGAAATAACCCATCCCTCACGTGGAGAAGCATCTTATGGGGTAGAGCTTTGTTCATCAAAGGGATGATATGGAAGATAGGCTCCGGAAATAGAATCATCATTGATGAAGACCTGTGGCTTGTTGAGGGAGGCGCTAAAGTCCCGTTGACTGTAAAGGAAGAGTTCAAGGGAAAAAGAATCAAGTCCATTATGAATGAAGACAGAGGATGGAATGAAGAGCTGGTGAGGGAAGCTTTTAAGCCAGAAGAAGCAAACTCCATTCTTAGCATCCAAGAGGCAAAACTGCAGCATCTAACTCTATTATTTGGGACAAGGATCGAAAGGGTGGTTTCACAGTTAGAAGCGCATACCATCTAGCTATCAGCCTCTCCGAAAGTGATGAAGCTTCAGGGTCGGATGACTCTAAAACCAAAAAGCTGTGGAATGCAATCTAGAAGCTCAAGTGCATCCTAAGGGCAAAAATTGTTGTGTGGAAGATTATTAACAATATCATCCCTACCAAAGTTAACTTAGTTAGGAGAGGAATAAATTCTACACTAGTTGTGTATTTTGCAGATCTAAGCCAGAATGGACGGAGCATGTCTTTTGGAAATGCAAATTCGCGAGACAGGTTTGGAGTTTTTTTCTTCCTAACTCATGTAAGTTTTTAAATTCCTACAGGGAGAGTTGGGGGCCGATGGATTTTTGGGAAGGGATGATCCAAAGTCTAAACAATTCAGAGCTAAACAAAGCAACCTTGATTTTGTGGTGTCTATGGAACCAACGAAATCAGAGTTATCACAACAACTAGTAGATCGACATTCATTCAACCAGAAGGAAAATCAGTATCTATTTGGAAGAATATGCTGA

mRNA sequence

ATGTGTCAGAGCAAAGGCAAAGCTGGGATGAGGTTCAGAGATCTCCACGACTTCAACAAAGTTATGCTAGCAAAAGTTAGCTGGAGAGTCATTAAAAACCTAGACAACTTGATGTCCAAAATTTTGAGAGGAAGGTACTTCCAAGATGGGGATTTTCTTAAAGCCAAGCTAGGAAATAACCCATCCCTCACGTGGAGAAGCATCTTATGGGGTAGAGCTTTGTTCATCAAAGGGATGATATGGAAGATAGGCTCCGGAAATAGAATCATCATTGATGAAGACCTGTGGCTTGTTGAGGGAGGCGCTAAAGTCCCGTTGACTGTAAAGGAAGAGTTCAAGGGAAAAAGAATCAAGTCCATTATGAATGAAGACAGAGGATGGAATGAAGAGCTGGGAGAGTTGGGGGCCGATGGATTTTTGGGAAGGGATGATCCAAAGTCTAAACAATTCAGAGCTAAACAAAGCAACCTTGATTTTGTGGTGTCTATGGAACCAACGAAATCAGAGTTATCACAACAACTAGTAGATCGACATTCATTCAACCAGAAGGAAAATCAGTATCTATTTGGAAGAATATGCTGA

Coding sequence (CDS)

ATGTGTCAGAGCAAAGGCAAAGCTGGGATGAGGTTCAGAGATCTCCACGACTTCAACAAAGTTATGCTAGCAAAAGTTAGCTGGAGAGTCATTAAAAACCTAGACAACTTGATGTCCAAAATTTTGAGAGGAAGGTACTTCCAAGATGGGGATTTTCTTAAAGCCAAGCTAGGAAATAACCCATCCCTCACGTGGAGAAGCATCTTATGGGGTAGAGCTTTGTTCATCAAAGGGATGATATGGAAGATAGGCTCCGGAAATAGAATCATCATTGATGAAGACCTGTGGCTTGTTGAGGGAGGCGCTAAAGTCCCGTTGACTGTAAAGGAAGAGTTCAAGGGAAAAAGAATCAAGTCCATTATGAATGAAGACAGAGGATGGAATGAAGAGCTGGGAGAGTTGGGGGCCGATGGATTTTTGGGAAGGGATGATCCAAAGTCTAAACAATTCAGAGCTAAACAAAGCAACCTTGATTTTGTGGTGTCTATGGAACCAACGAAATCAGAGTTATCACAACAACTAGTAGATCGACATTCATTCAACCAGAAGGAAAATCAGTATCTATTTGGAAGAATATGCTGA

Protein sequence

MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNNPSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSIMNEDRGWNEELGELGADGFLGRDDPKSKQFRAKQSNLDFVVSMEPTKSELSQQLVDRHSFNQKENQYLFGRIC
Homology
BLAST of Lcy06g011620 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-15
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 1   MCQSK-GKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGN 60
           +C+SK    G+ FRDL  FN+ +LAK S+R+I     L+S++LR RYF     ++  +G 
Sbjct: 47  LCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGT 106

Query: 61  NPSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPL 107
            PS  WRSI+ GR L  +G++  IG G    +  D W+++     PL
Sbjct: 107 RPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy06g011620 vs. ExPASy TrEMBL
Match: A0A1S8ACU2 (Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 55/131 (41.98%), Postives = 89/131 (67.94%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +CQ+KG+ G+ FRD+  FN+ ++AK SWR+IK  ++LM+KIL+ +YF+  DFL+AKLG+ 
Sbjct: 89  LCQAKGRGGLGFRDITSFNQALVAKQSWRIIKYPESLMAKILQAKYFKGADFLQAKLGSK 148

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PS  WRSI+WGR + + GM W+IG+G+R+ I +  W+    A  P++         +  +
Sbjct: 149 PSFVWRSIIWGRQVIVNGMRWRIGTGDRVKIYKSHWIPRPQAFKPISAPTLGMDCTVAEL 208

Query: 121 MNEDRGWNEEL 132
           ++E++ W E L
Sbjct: 209 IDENQKWKESL 219

BLAST of Lcy06g011620 vs. ExPASy TrEMBL
Match: A0A6J1CV63 (uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014662 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.4e-27
Identity = 53/105 (50.48%), Postives = 81/105 (77.14%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +C SK + G+ F+DL  FN+ MLAK SW++IKN ++L+ ++LRG+YF+ G+F+ A+LG+N
Sbjct: 132 LCVSKEQGGLGFKDLCIFNQAMLAKQSWQIIKNPNSLLVRVLRGKYFKHGNFMTAELGSN 191

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVP 106
           PS  WRSILWG+ LF+KG+ W+IG+G  +II  D W++  G+ +P
Sbjct: 192 PSFVWRSILWGKELFVKGIRWRIGNGFSVIIGSDPWILREGSSLP 236

BLAST of Lcy06g011620 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-25
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +C  K   GM FRD+  FN+ MLAK SWR++++ D+L++K LRG+YF+ G FL+AKLG  
Sbjct: 509 LCIRKDLGGMGFRDISIFNQAMLAKQSWRILRHPDSLLAKTLRGKYFKTGSFLQAKLGAR 568

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PS  WRSILWGR LF KG  WK+G+G  I +  D WL   G   P+      +   +  +
Sbjct: 569 PSYAWRSILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWL 628

Query: 121 MNEDRGWNE 130
           M     W+E
Sbjct: 629 MEGRGRWDE 637

BLAST of Lcy06g011620 vs. ExPASy TrEMBL
Match: A0A803PQ30 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.7e-24
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 1    MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
            +C+SK + GM FR    FN+ +LAK +WR+  N D+L+S++L+ RYF +  FL+A LG++
Sbjct: 1289 LCKSKSEGGMGFRSFIHFNQALLAKQAWRIYDNPDSLLSRVLKSRYFPNNTFLEASLGHS 1348

Query: 61   PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
            PSLTW+ I W R L +KG+ WK+G G  I  D D W+      +P   K    G  + ++
Sbjct: 1349 PSLTWQGIHWARELLLKGLRWKVGDGRHIQSDYDPWIPGHNTFLPFLYKGPSNGV-VANL 1408

Query: 121  MNEDRGWN 129
            ++++R WN
Sbjct: 1409 ISDERQWN 1415

BLAST of Lcy06g011620 vs. ExPASy TrEMBL
Match: A0A803P9P5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.7e-24
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +C++K + GM F+    +N+ +LAK SW +  N  +L+ KIL+ RYF+   FL+A++G+ 
Sbjct: 323 LCKAKVEGGMGFKSFVHYNQALLAKQSWFIFDNPSSLLHKILKARYFKYNTFLEAEIGSY 382

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PSLTWRSI+WG+ L  KG+ WK+G+GN+I+   D WL    +  PL  K      ++  +
Sbjct: 383 PSLTWRSIIWGKELLTKGLRWKVGNGNQILCASDPWLPGITSFKPLIFKNPSLSMKVSEL 442

Query: 121 MNEDRGWNEEL 132
           +   R WN  L
Sbjct: 443 ITNQRQWNHSL 453

BLAST of Lcy06g011620 vs. NCBI nr
Match: XP_022145148.1 (uncharacterized protein LOC111014662 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-26
Identity = 53/105 (50.48%), Postives = 81/105 (77.14%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +C SK + G+ F+DL  FN+ MLAK SW++IKN ++L+ ++LRG+YF+ G+F+ A+LG+N
Sbjct: 132 LCVSKEQGGLGFKDLCIFNQAMLAKQSWQIIKNPNSLLVRVLRGKYFKHGNFMTAELGSN 191

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVP 106
           PS  WRSILWG+ LF+KG+ W+IG+G  +II  D W++  G+ +P
Sbjct: 192 PSFVWRSILWGKELFVKGIRWRIGNGFSVIIGSDPWILREGSSLP 236

BLAST of Lcy06g011620 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-24
Identity = 58/129 (44.96%), Postives = 79/129 (61.24%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +C  K   GM FRD+  FN+ MLAK SWR++++ D+L++K LRG+YF+ G FL+AKLG  
Sbjct: 509 LCIRKDLGGMGFRDISIFNQAMLAKQSWRILRHPDSLLAKTLRGKYFKTGSFLQAKLGAR 568

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PS  WRSILWGR LF KG  WK+G+G  I +  D WL   G   P+      +   +  +
Sbjct: 569 PSYAWRSILWGRDLFKKGYRWKVGNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWL 628

Query: 121 MNEDRGWNE 130
           M     W+E
Sbjct: 629 MEGRGRWDE 637

BLAST of Lcy06g011620 vs. NCBI nr
Match: XP_024038343.1 (uncharacterized protein LOC112097373 [Citrus clementina])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-24
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           + Q+K + GM FRD   FN+ ++AK  WR+++  D+L++KIL+ RYFQ  DF+ A+LG+N
Sbjct: 771 LSQAKCRGGMGFRDFTSFNQALVAKQGWRILQFPDSLVAKILQARYFQHKDFMNARLGSN 830

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PS  WRSILWGR +  KG  W+IG+G  I++ ++ WL       P++         +  +
Sbjct: 831 PSFIWRSILWGRQVISKGSKWRIGNGQSIMLHKENWLPRPLTFKPISKPSLPADALVAEL 890

Query: 121 MNEDRGWNEEL 132
           +NED  WNE L
Sbjct: 891 INEDHTWNEGL 901

BLAST of Lcy06g011620 vs. NCBI nr
Match: XP_015382226.1 (uncharacterized protein LOC107175329, partial [Citrus sinensis])

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-24
Identity = 52/131 (39.69%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +CQ+K + GM FRD   FN+ ++AK  WR+I++ ++LM+++L+ +YF    F++AKLG+ 
Sbjct: 454 LCQAKMRGGMGFRDFSCFNQALIAKQGWRIIQHPESLMARVLKAKYFNQSSFMEAKLGSR 513

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PS  WRSILWGR +  KG+ WKIGSGN++ I +  WL    A  P +         +  +
Sbjct: 514 PSFVWRSILWGRQIMQKGLRWKIGSGNQVCIYKSNWLPRLEAFKPFSPPTLDIQAVVADL 573

Query: 121 MNEDRGWNEEL 132
           ++E++ W +E+
Sbjct: 574 IDENQNWKKEI 584

BLAST of Lcy06g011620 vs. NCBI nr
Match: XP_030478233.1 (uncharacterized protein LOC115695298 [Cannabis sativa])

HSP 1 Score: 121.7 bits (304), Expect = 6.9e-24
Identity = 56/133 (42.11%), Postives = 81/133 (60.90%), Query Frame = 0

Query: 1   MCQSKGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNN 60
           +CQ K + GM FR    +N+ +LAK +W +  N  +L+ KIL+ RYF    FL+A+LG+ 
Sbjct: 40  LCQEKVEGGMGFRSFVHYNQALLAKQAWLIFSNPSSLVHKILKARYFNFNAFLEAELGSY 99

Query: 61  PSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVKEEFKGKRIKSI 120
           PSLTWRSILWG+ L  KG+ WK+G+GN I+     WL +  +  PL  K+     R+  +
Sbjct: 100 PSLTWRSILWGKELLCKGLRWKVGNGNHILCASGPWLPDITSFKPLMYKDSDTLMRVSDL 159

Query: 121 MNEDRGWNEELGE 134
           +  +R WN  L E
Sbjct: 160 ITSNRQWNHTLLE 172

BLAST of Lcy06g011620 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 1   MCQSK-GKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGN 60
           +C+SK    G+ FRDL  FN+ +LAK S+R+I     L+S++LR RYF     ++  +G 
Sbjct: 47  LCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGT 106

Query: 61  NPSLTWRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPL 107
            PS  WRSI+ GR L  +G++  IG G    +  D W+++     PL
Sbjct: 107 RPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Lcy06g011620 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-14
Identity = 36/105 (34.29%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 5   KGKAGMRFRDLHDFNKVMLAKVSWRVIKNLDNLMSKILRGRYFQDGDFLKAKLGNNPSLT 64
           K + G+ F+D+  FN  +L K  WR++   ++LM+K+ + RYF   D L A LG+ PS  
Sbjct: 51  KAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFV 110

Query: 65  WRSILWGRALFIKGMIWKIGSGNRIIIDEDLWLVEGGAKVPLTVK 110
           W+SI   + +  +G    +G+G  III    WL    A   L ++
Sbjct: 111 WKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQ 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932952.1e-1538.32Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A1S8ACU24.2e-2741.98Ribonuclease H-like superfamily protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
A0A6J1CV639.4e-2750.48uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1DRA08.8e-2544.96uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A803PQ309.7e-2440.63Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803P9P59.7e-2439.69Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022145148.11.9e-2650.48uncharacterized protein LOC111014662 [Momordica charantia][more]
XP_022155286.11.8e-2444.96uncharacterized protein LOC111022423 [Momordica charantia][more]
XP_024038343.12.4e-2441.98uncharacterized protein LOC112097373 [Citrus clementina][more]
XP_015382226.14.0e-2439.69uncharacterized protein LOC107175329, partial [Citrus sinensis][more]
XP_030478233.16.9e-2442.11uncharacterized protein LOC115695298 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
ATMG00310.11.5e-1638.32RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.13.1e-1434.29Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 1..130
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g011620.1Lcy06g011620.1mRNA