Lcy06g011610 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGGGGGTTCAATCGGAGCTCTTGTTCCTACTGTCAAGCCTGAGCCCTCTGCTGTCGACTCCACTGCCTCGCCTGCTCCGCCGCCCTTGCCTCCTCCTCCTCCCCCTCTACCGCTTCCCGAAGTCATGCCTGCTGACTTGGAAGCAGGAGACGCCAATGCCACCACGTCTGATGTTAATACGGAGGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCGTTTCTCACTACCTGTGGACATAGCTTTTGCTATATGTGTATTGTTACTCACCTTCGGAATAAGAGTGATTGTCCTTGTTGCGCTCACTTCCTCAGGAGCAACAGTATTTTCCCCAATATTTTGCTTGATAAGGTTTGCTCTTCATTTCTCATTTCTCATGATCGATTTTGGATAGTTTTCTTTTGTTGACGGATGATGGGAAATCTTAATTTGACAAGTAAAGGAGGTGATGGTTCTAGAGATTTAATTTGTTTTTCTCTGACCTTGTGTCTGAATTGGCTTGGTTGTTTATCATCAATTGAATTCGATCCTAATTTCTATCATTGAAACAGAGTTTCATGACTTCTTCAATTTTACTCGGTCCTGGTTTGATTATATGAACATCCGTTGATAATCGCATTTTAGTTACTCTACATTTTTCAAGTGTATGTGTTCGACCAAGTACCGAAGATTTGACAATGGAGAGTAGAACTATTGGTCTCGGTTAAACTGTTGTTGTACTGGAGACCCTTCTGTATTGTAAGAAATCTTTGTTGAAGGTATTTTATTTGATATTGAAGTCATTTCATTATGGGTGAAATTATATTTCTGTAATTTCTAAGATTGTGCCTCGTCTTCTCTTAGATTTGTAAAGTTCCTTGGATGTGTTTGGTTAGTGATCTGAGAAGAGAAATTTGAAAACTGTTTAAAAAGTTGTTACGAATGTGTTTGGTAATTTATTTATAAATAATAAATAGAGTTGTAGTTACCTATATTGAATGTAAACTATTATTAATTAATTTATGAATATGTTTTATGTTATCCTTATTTTAATTTTAACAAAAATGAAATGAGTTTATTACATGAAATAATATAGGTCACAAAGCTTTTTTTTTTGTTAATTTAGGTCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGGTTTTTGAAAATTAGGCTTATACGCACCTATCTCCATCTATAAATTTCTTTGTTTTAGTATTAACTTCTTCCTTGTTTTCAAAAATCAAGTAAAATTTTGAAAACAAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTGGAATTTGGCTAGGAATTCAAATAGATCTTTAACAAACATGAACTCCATTATAGGGAATTTGGGAGAAAACCAGCATAATTTTCAAAAACCAAAAACTAAAAACCAAATGGTCATCAAACGGGCCTTAATTTTTCATTTTCAAATTTGAAATTTAAAATCTGGATTTAATGAGAACATGAGGTGTTTTCGGTATTTTTACTATTTGGATCACAAAATTAAAAAAAAAAAAAACTGTTTCTTACACATCAAAGAAAAATAAGAGGTGGAAAATGATTTTTTTTTCCTTTTTTTCTTTTTTTTTTCATACCTCTGCAGGAAACATTTATATTTCTTATTGATGATCACGAATTAAATTTTGTTTCAATATTTTTTAAAAATTTTTACCTCGGTTCCCCCTTTTTTTTGGTTCCTATACTTATTTTAGTTCTTATAATTTGGACGAACTGCAGTTTGGATTCCTTCTAGTGAGAGTTTGGGACCAAATCCTATATACTTTTTGATGTACGAGGACTGTAATTGCTAGCTGCAATTTATTTGAAGTAGTGAGACTGGTGAAGTATAGGTACTATTACTAACATAGAATAAGTGGTGAATTACATGATTCAAAATAGCATTTTAACATAACATTAACTAGCATTATGCTGTTGTTCAGCTTAATGCTGAAATATTGTAAAGTTTTTATATCTAGTGTTCGATGTAACATGAAATAACCGAATTATGCTGATGATACCTTGATCATTTAATCATTTCACGTGAATGATTGTGCAACAATGCAAACCAACATTCATTTTTTAGAATATTTGTCTATCCATAAAAAAAGAAAAAAAGAATATTACAATTCAAACATGGAGTAGGGGATTCAAATCTGCTATCCGGGGAAGAGAGGTTTTTAAATGTCTTGACTAGTTGATCTATGTTCAAGTCGGTATTATAAAATTGAAAGTTAACATTTATAAAAGGAAATTACTTGACAAACAATCTTCTACATGTTGAGCAAAAAGGAAACACTCTGTACATGTTGAGCAAATTGGCTACACCGGCTCTAAAATTTGAGTGATCTTTGGAAGCTTCATGTTATGTTGAAACTAAATTTTTGTGCCCTTGTCTCTAACTTTATGACATTGCAATGCATCGTCATAGTTACTTGTGTGCCAACTTTGCAGTTGTTAA ATGGGTGGGGGTTCAATCGGAGCTCTTGTTCCTACTGTCAAGCCTGAGCCCTCTGCTGTCGACTCCACTGCCTCGCCTGCTCCGCCGCCCTTGCCTCCTCCTCCTCCCCCTCTACCGCTTCCCGAAGTCATGCCTGCTGACTTGGAAGCAGGAGACGCCAATGCCACCACGTCTGATGTTAATACGGAGGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCGTTTCTCACTACCTGTGGACATAGCTTTTGCTATATGTGTATTGTTACTCACCTTCGGAATAAGAGTGATTGTCCTTGTTGCGCTCACTTCCTCAGGAGCAACAGTATTTTCCCCAATATTTTGCTTGATAAGTTACTTGTGTGCCAACTTTGCAGTTGTTAA ATGGGTGGGGGTTCAATCGGAGCTCTTGTTCCTACTGTCAAGCCTGAGCCCTCTGCTGTCGACTCCACTGCCTCGCCTGCTCCGCCGCCCTTGCCTCCTCCTCCTCCCCCTCTACCGCTTCCCGAAGTCATGCCTGCTGACTTGGAAGCAGGAGACGCCAATGCCACCACGTCTGATGTTAATACGGAGGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCGTTTCTCACTACCTGTGGACATAGCTTTTGCTATATGTGTATTGTTACTCACCTTCGGAATAAGAGTGATTGTCCTTGTTGCGCTCACTTCCTCAGGAGCAACAGTATTTTCCCCAATATTTTGCTTGATAAGTTACTTGTGTGCCAACTTTGCAGTTGTTAA MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPPPPLPLPEVMPADLEAGDANATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSNSIFPNILLDKLLVCQLCSC Homology
BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 4.1e-26 Identity = 68/124 (54.84%), Postives = 76/124 (61.29%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2) HSP 1 Score: 116.7 bits (291), Expect = 2.0e-25 Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: Q8NHY2 (E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 6.3e-11 Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: Q9R1A8 (E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2) HSP 1 Score: 68.6 bits (166), Expect = 6.3e-11 Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: Q75EN0 (Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RAD18 PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08 Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A6J1GSN7 (E3 ubiquitin-protein ligase COP1-like OS=Cucurbita moschata OX=3662 GN=LOC111457170 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51 Identity = 109/138 (78.99%), Postives = 117/138 (84.78%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A6J1K4K9 (E3 ubiquitin-protein ligase COP1-like OS=Cucurbita maxima OX=3661 GN=LOC111490025 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 5.0e-51 Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A6J1CL47 (E3 ubiquitin-protein ligase COP1-like OS=Momordica charantia OX=3673 GN=LOC111012608 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50 Identity = 106/127 (83.46%), Postives = 111/127 (87.40%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A0A0LYH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699620 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 7.4e-47 Identity = 105/141 (74.47%), Postives = 110/141 (78.01%), Query Frame = 0
BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A5A7TIH5 (E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00010 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 6.9e-45 Identity = 102/138 (73.91%), Postives = 109/138 (78.99%), Query Frame = 0
BLAST of Lcy06g011610 vs. NCBI nr
Match: KAG7012622.1 (E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52 Identity = 110/133 (82.71%), Postives = 118/133 (88.72%), Query Frame = 0
BLAST of Lcy06g011610 vs. NCBI nr
Match: XP_022955102.1 (E3 ubiquitin-protein ligase COP1-like [Cucurbita moschata]) HSP 1 Score: 212.2 bits (539), Expect = 2.7e-51 Identity = 109/138 (78.99%), Postives = 117/138 (84.78%), Query Frame = 0
BLAST of Lcy06g011610 vs. NCBI nr
Match: KAG6573482.1 (E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 212.2 bits (539), Expect = 2.7e-51 Identity = 109/138 (78.99%), Postives = 117/138 (84.78%), Query Frame = 0
BLAST of Lcy06g011610 vs. NCBI nr
Match: XP_023523813.1 (E3 ubiquitin-protein ligase COP1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 211.8 bits (538), Expect = 3.5e-51 Identity = 109/139 (78.42%), Postives = 117/139 (84.17%), Query Frame = 0
BLAST of Lcy06g011610 vs. NCBI nr
Match: XP_022994223.1 (E3 ubiquitin-protein ligase COP1-like [Cucurbita maxima]) HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50 Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 0
BLAST of Lcy06g011610 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein ) HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26 Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 0
BLAST of Lcy06g011610 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein ) HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05 Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0
BLAST of Lcy06g011610 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein ) HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05 Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of Lcy06g011610 vs. TAIR 10
Match: AT3G07120.1 (RING/U-box superfamily protein ) HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05 Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 0
BLAST of Lcy06g011610 vs. TAIR 10
Match: AT5G22750.1 (DNA/RNA helicase protein ) HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04 Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|