Lcy06g011610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g011610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	E3 ubiquitin-protein ligase COP1-like
Location	Chr06: 13628689 .. 13631165 (-)
RNA-Seq Expression	Lcy06g011610
Synteny	Lcy06g011610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGGGTTCAATCGGAGCTCTTGTTCCTACTGTCAAGCCTGAGCCCTCTGCTGTCGACTCCACTGCCTCGCCTGCTCCGCCGCCCTTGCCTCCTCCTCCTCCCCCTCTACCGCTTCCCGAAGTCATGCCTGCTGACTTGGAAGCAGGAGACGCCAATGCCACCACGTCTGATGTTAATACGGAGGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCGTTTCTCACTACCTGTGGACATAGCTTTTGCTATATGTGTATTGTTACTCACCTTCGGAATAAGAGTGATTGTCCTTGTTGCGCTCACTTCCTCAGGAGCAACAGTATTTTCCCCAATATTTTGCTTGATAAGGTTTGCTCTTCATTTCTCATTTCTCATGATCGATTTTGGATAGTTTTCTTTTGTTGACGGATGATGGGAAATCTTAATTTGACAAGTAAAGGAGGTGATGGTTCTAGAGATTTAATTTGTTTTTCTCTGACCTTGTGTCTGAATTGGCTTGGTTGTTTATCATCAATTGAATTCGATCCTAATTTCTATCATTGAAACAGAGTTTCATGACTTCTTCAATTTTACTCGGTCCTGGTTTGATTATATGAACATCCGTTGATAATCGCATTTTAGTTACTCTACATTTTTCAAGTGTATGTGTTCGACCAAGTACCGAAGATTTGACAATGGAGAGTAGAACTATTGGTCTCGGTTAAACTGTTGTTGTACTGGAGACCCTTCTGTATTGTAAGAAATCTTTGTTGAAGGTATTTTATTTGATATTGAAGTCATTTCATTATGGGTGAAATTATATTTCTGTAATTTCTAAGATTGTGCCTCGTCTTCTCTTAGATTTGTAAAGTTCCTTGGATGTGTTTGGTTAGTGATCTGAGAAGAGAAATTTGAAAACTGTTTAAAAAGTTGTTACGAATGTGTTTGGTAATTTATTTATAAATAATAAATAGAGTTGTAGTTACCTATATTGAATGTAAACTATTATTAATTAATTTATGAATATGTTTTATGTTATCCTTATTTTAATTTTAACAAAAATGAAATGAGTTTATTACATGAAATAATATAGGTCACAAAGCTTTTTTTTTTGTTAATTTAGGTCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGGTTTTTGAAAATTAGGCTTATACGCACCTATCTCCATCTATAAATTTCTTTGTTTTAGTATTAACTTCTTCCTTGTTTTCAAAAATCAAGTAAAATTTTGAAAACAAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTGGAATTTGGCTAGGAATTCAAATAGATCTTTAACAAACATGAACTCCATTATAGGGAATTTGGGAGAAAACCAGCATAATTTTCAAAAACCAAAAACTAAAAACCAAATGGTCATCAAACGGGCCTTAATTTTTCATTTTCAAATTTGAAATTTAAAATCTGGATTTAATGAGAACATGAGGTGTTTTCGGTATTTTTACTATTTGGATCACAAAATTAAAAAAAAAAAAAACTGTTTCTTACACATCAAAGAAAAATAAGAGGTGGAAAATGATTTTTTTTTCCTTTTTTTCTTTTTTTTTTCATACCTCTGCAGGAAACATTTATATTTCTTATTGATGATCACGAATTAAATTTTGTTTCAATATTTTTTAAAAATTTTTACCTCGGTTCCCCCTTTTTTTTGGTTCCTATACTTATTTTAGTTCTTATAATTTGGACGAACTGCAGTTTGGATTCCTTCTAGTGAGAGTTTGGGACCAAATCCTATATACTTTTTGATGTACGAGGACTGTAATTGCTAGCTGCAATTTATTTGAAGTAGTGAGACTGGTGAAGTATAGGTACTATTACTAACATAGAATAAGTGGTGAATTACATGATTCAAAATAGCATTTTAACATAACATTAACTAGCATTATGCTGTTGTTCAGCTTAATGCTGAAATATTGTAAAGTTTTTATATCTAGTGTTCGATGTAACATGAAATAACCGAATTATGCTGATGATACCTTGATCATTTAATCATTTCACGTGAATGATTGTGCAACAATGCAAACCAACATTCATTTTTTAGAATATTTGTCTATCCATAAAAAAAGAAAAAAAGAATATTACAATTCAAACATGGAGTAGGGGATTCAAATCTGCTATCCGGGGAAGAGAGGTTTTTAAATGTCTTGACTAGTTGATCTATGTTCAAGTCGGTATTATAAAATTGAAAGTTAACATTTATAAAAGGAAATTACTTGACAAACAATCTTCTACATGTTGAGCAAAAAGGAAACACTCTGTACATGTTGAGCAAATTGGCTACACCGGCTCTAAAATTTGAGTGATCTTTGGAAGCTTCATGTTATGTTGAAACTAAATTTTTGTGCCCTTGTCTCTAACTTTATGACATTGCAATGCATCGTCATAGTTACTTGTGTGCCAACTTTGCAGTTGTTAA

mRNA sequence

ATGGGTGGGGGTTCAATCGGAGCTCTTGTTCCTACTGTCAAGCCTGAGCCCTCTGCTGTCGACTCCACTGCCTCGCCTGCTCCGCCGCCCTTGCCTCCTCCTCCTCCCCCTCTACCGCTTCCCGAAGTCATGCCTGCTGACTTGGAAGCAGGAGACGCCAATGCCACCACGTCTGATGTTAATACGGAGGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCGTTTCTCACTACCTGTGGACATAGCTTTTGCTATATGTGTATTGTTACTCACCTTCGGAATAAGAGTGATTGTCCTTGTTGCGCTCACTTCCTCAGGAGCAACAGTATTTTCCCCAATATTTTGCTTGATAAGTTACTTGTGTGCCAACTTTGCAGTTGTTAA

Coding sequence (CDS)

ATGGGTGGGGGTTCAATCGGAGCTCTTGTTCCTACTGTCAAGCCTGAGCCCTCTGCTGTCGACTCCACTGCCTCGCCTGCTCCGCCGCCCTTGCCTCCTCCTCCTCCCCCTCTACCGCTTCCCGAAGTCATGCCTGCTGACTTGGAAGCAGGAGACGCCAATGCCACCACGTCTGATGTTAATACGGAGGATTTGGATAAGGATATGCTTTGCCCTATTTGCATGCAGATCATTAAGGATGCGTTTCTCACTACCTGTGGACATAGCTTTTGCTATATGTGTATTGTTACTCACCTTCGGAATAAGAGTGATTGTCCTTGTTGCGCTCACTTCCTCAGGAGCAACAGTATTTTCCCCAATATTTTGCTTGATAAGTTACTTGTGTGCCAACTTTGCAGTTGTTAA

Protein sequence

MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPPPPLPLPEVMPADLEAGDANATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSNSIFPNILLDKLLVCQLCSC

Homology

[Close]

BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-26
Identity = 68/124 (54.84%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 5   SIGALVP-TVKPEPSAVDSTASPAPPPLPPPPPPLPLPEVMPADLEAGDANATTSDVNTE 64
           S+G LVP  VKPEPS   ST + A       P                            
Sbjct: 5   SVGPLVPAVVKPEPSKNFSTDTTAAGTFLLVP-------------------------TMS 64

Query: 65  DLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSNSIFPNILL 124
           DLDKD LCPICMQIIKDAFLT CGHSFCYMCI+THLRNKSDCPCC H+L ++++FPN LL
Sbjct: 65  DLDKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLL 103

Query: 125 DKLL 128
           DKLL
Sbjct: 125 DKLL 103

[Close]

BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-25
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 23  TASPAPPPLPPPPPPLPLPEVMPADLEAGDANATTSDVNTEDLDKDMLCPICMQIIKDAF 82
           +  P  P + P P    + E      E  D  +  S++   DLDKD+LCPICMQIIKDAF
Sbjct: 5   STDPVVPAVKPDPRTSSVGEGANRH-ENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAF 64

Query: 83  LTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSNSIFPNILLDKLL 128
           LT CGHSFCYMCI+THLRNKSDCPCC+  L +N ++PN LLDKLL
Sbjct: 65  LTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLL 108

[Close]

BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: Q8NHY2 (E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-11
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 63  EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRS-NSIFPNI 122
           ED   D +CPIC  +I++A++T CGHSFCY CI   L + + CP C + + + + ++PN 
Sbjct: 128 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNF 187

Query: 123 LLDKLLVCQ 131
           L+++L++ Q
Sbjct: 188 LVNELILKQ 196

[Close]

BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: Q9R1A8 (E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-11
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 63  EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRS-NSIFPNI 122
           ED   D +CPIC  +I++A++T CGHSFCY CI   L + + CP C + + + + ++PN 
Sbjct: 130 EDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNF 189

Query: 123 LLDKLLVCQ 131
           L+++L++ Q
Sbjct: 190 LVNELILKQ 198

[Close]

BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot
Match: Q75EN0 (Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RAD18 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 55  ATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRS 114
           A T+     DLD  + C IC  +++   LT CGH+FC +CI  +L  +S CP C   LR 
Sbjct: 16  AGTTIPELADLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAELRQ 75

Query: 115 NSIFPNILLDKLLVCQL 132
           N +    L+ +L  C +
Sbjct: 76  NMLQKEFLVGELAACYM 92

[Close]

BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A6J1GSN7 (E3 ubiquitin-protein ligase COP1-like OS=Cucurbita moschata OX=3662 GN=LOC111457170 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 109/138 (78.99%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPPPPLPLPE-----------VMPADLE 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLPPPPPP P P            VM A L+
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPPPPPPPPPPSSSPPPPPPPPLVMAAQLD 60

Query: 61  AGDANATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCA 120
           AG+A A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC+
Sbjct: 61  AGEAKASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCS 120

Query: 121 HFLRSNSIFPNILLDKLL 128
           +F+RSNSIFPNILLDK L
Sbjct: 121 NFIRSNSIFPNILLDKFL 138

[Close]

BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A6J1K4K9 (E3 ubiquitin-protein ligase COP1-like OS=Cucurbita maxima OX=3661 GN=LOC111490025 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.0e-51
Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPP-------PPPLPLPEVMPADLEAGDA 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLP P       PPP PLP VM A  +AG+A
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPLPPPPPSSSPPPPPLPVVMAAQFDAGEA 60

Query: 61  NATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLR 120
            A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC++F+R
Sbjct: 61  KASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCSNFIR 120

Query: 121 SNSIFPNILLDKLL 128
           SNSIFPNILLDK L
Sbjct: 121 SNSIFPNILLDKFL 134

[Close]

BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A6J1CL47 (E3 ubiquitin-protein ligase COP1-like OS=Momordica charantia OX=3673 GN=LOC111012608 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 106/127 (83.46%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPPPPLPLPEVMPADLEAGDANATTSDV 60
           MGGGS+  LVPTVK EPSA DSTA P PPP P PPPP P PE M A+LEAG+ NAT S+ 
Sbjct: 1   MGGGSMAPLVPTVKTEPSAADSTAPPPPPP-PLPPPPPPPPEAMAAELEAGELNATASEA 60

Query: 61  NTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSNSIFPN 120
           N+EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC HFLRSNSIFPN
Sbjct: 61  NSEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCGHFLRSNSIFPN 120

Query: 121 ILLDKLL 128
           ILLDKLL
Sbjct: 121 ILLDKLL 126

[Close]

BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A0A0LYH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699620 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.4e-47
Identity = 105/141 (74.47%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTAS---PAPPPLPPPPPPLPLPEVMPADLEAGDANATT 60
           MGGGSIGALVPTVK EPS +DST S   P PPPLPPPPPP P  ++MP   +   ANA  
Sbjct: 1   MGGGSIGALVPTVKTEPSTLDSTPSSSPPPPPPLPPPPPPPPPSDLMPPQFQPDAANAAA 60

Query: 61  -----------SDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCP 120
                      S  NT+DLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCP
Sbjct: 61  PTPTPTPTTAPSHSNTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCP 120

Query: 121 CCAHFLRSNSIFPNILLDKLL 128
           CCAHFLRSNSIFPNILLDKLL
Sbjct: 121 CCAHFLRSNSIFPNILLDKLL 141

[Close]

BLAST of Lcy06g011610 vs. ExPASy TrEMBL
Match: A0A5A7TIH5 (E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00010 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.9e-45
Identity = 102/138 (73.91%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTAS---PAPPPLPPPPPPLP----LPEVMPADLEAGDA 60
           MGGGS+GALVPTVK EPS +DST S   P PPPLPP PPP P    +P+ +P D  A  A
Sbjct: 1   MGGGSVGALVPTVKTEPSTLDSTPSSSPPPPPPLPPSPPPPPPSDLMPQFLPEDANAAAA 60

Query: 61  ----NATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCA 120
                A  S  +T+DLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCA
Sbjct: 61  TPTPTAAASHSDTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCA 120

Query: 121 HFLRSNSIFPNILLDKLL 128
           HFLRS SIFPNILLDKLL
Sbjct: 121 HFLRSTSIFPNILLDKLL 138

[Close]

BLAST of Lcy06g011610 vs. NCBI nr
Match: KAG7012622.1 (E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52
Identity = 110/133 (82.71%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPP------PPLPLPEVMPADLEAGDAN 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLPPPP      PPLPLP VM A  +AG+A 
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPPPPPPPSSSPPLPLPIVMAAQFDAGEAK 60

Query: 61  ATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRS 120
           A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC++F+RS
Sbjct: 61  ASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCSNFIRS 120

Query: 121 NSIFPNILLDKLL 128
           NSIFPNILLDK L
Sbjct: 121 NSIFPNILLDKFL 133

[Close]

BLAST of Lcy06g011610 vs. NCBI nr
Match: XP_022955102.1 (E3 ubiquitin-protein ligase COP1-like [Cucurbita moschata])

HSP 1 Score: 212.2 bits (539), Expect = 2.7e-51
Identity = 109/138 (78.99%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPPPPLPLPE-----------VMPADLE 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLPPPPPP P P            VM A L+
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPPPPPPPPPPSSSPPPPPPPPLVMAAQLD 60

Query: 61  AGDANATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCA 120
           AG+A A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC+
Sbjct: 61  AGEAKASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCS 120

Query: 121 HFLRSNSIFPNILLDKLL 128
           +F+RSNSIFPNILLDK L
Sbjct: 121 NFIRSNSIFPNILLDKFL 138

[Close]

BLAST of Lcy06g011610 vs. NCBI nr
Match: KAG6573482.1 (E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 2.7e-51
Identity = 109/138 (78.99%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPPP-----------PPLPLPEVMPADLE 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLPPPP           PP PLP VM A  +
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPPPPPPPPPPPSSSSPPPPLPIVMAAQFD 60

Query: 61  AGDANATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCA 120
           AG+A A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC+
Sbjct: 61  AGEAKASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCS 120

Query: 121 HFLRSNSIFPNILLDKLL 128
           +F+RSNSIFPNILLDK L
Sbjct: 121 NFIRSNSIFPNILLDKFL 138

[Close]

BLAST of Lcy06g011610 vs. NCBI nr
Match: XP_023523813.1 (E3 ubiquitin-protein ligase COP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.8 bits (538), Expect = 3.5e-51
Identity = 109/139 (78.42%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPP------------PPPLPLPEVMPADL 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLPPP            PPP PLP VM A  
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPPPPPPPPSPPPPSSPPPPPLPLVMAAQF 60

Query: 61  EAGDANATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC 120
           +AG+A A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC
Sbjct: 61  DAGEAKASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC 120

Query: 121 AHFLRSNSIFPNILLDKLL 128
           ++F+RSNSIFPNILLDK L
Sbjct: 121 SNFIRSNSIFPNILLDKFL 139

[Close]

BLAST of Lcy06g011610 vs. NCBI nr
Match: XP_022994223.1 (E3 ubiquitin-protein ligase COP1-like [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MGGGSIGALVPTVKPEPSAVDSTASPAPPPLPPP-------PPPLPLPEVMPADLEAGDA 60
           MGGGSIGALVPTVKP+PSA+DSTASPAP PLP P       PPP PLP VM A  +AG+A
Sbjct: 1   MGGGSIGALVPTVKPDPSALDSTASPAPQPLPLPPPPPSSSPPPPPLPVVMAAQFDAGEA 60

Query: 61  NATTSDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFLR 120
            A+ SDVN EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCC++F+R
Sbjct: 61  KASASDVNAEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCSNFIR 120

Query: 121 SNSIFPNILLDKLL 128
           SNSIFPNILLDK L
Sbjct: 121 SNSIFPNILLDKFL 134

[Close]

BLAST of Lcy06g011610 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 23  TASPAPPPLPPPPPPLPLPEVMPADLEAGDANATTSDVNTEDLDKDMLCPICMQIIKDAF 82
           +  P  P + P P    + E      E  D  +  S++   DLDKD+LCPICMQIIKDAF
Sbjct: 5   STDPVVPAVKPDPRTSSVGEGANRH-ENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAF 64

Query: 83  LTTCGHSFCYMCIVTHLRNKSDCPCCAHFLRSNSIFPNILLDKLL 128
           LT CGHSFCYMCI+THLRNKSDCPCC+  L +N ++PN LLDKLL
Sbjct: 65  LTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLL 108

[Close]

BLAST of Lcy06g011610 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 58  SDVNTEDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIV--THLRNKS-DCPCCAHFLRS 117
           +D N  D   +  C IC+ + +D  +T CGH FC+ C+    HL ++S DCP C   +  
Sbjct: 11  NDTNNND-SSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEE 70

Query: 118 NSIFP 120
           + + P
Sbjct: 71  DRLVP 74

[Close]

BLAST of Lcy06g011610 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05
Identity = 18/60 (30.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 63  EDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIV--THLRNKSD-CPCCAHFLRSNSIFP 120
           +D   +  C IC+++ ++  +T CGH FC+ C+    H  +KS+ CP C   ++ +++ P
Sbjct: 11  DDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDTLVP 70

[Close]

BLAST of Lcy06g011610 vs. TAIR 10
Match: AT3G07120.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 0


Query: 68  DMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFL 113
           ++ C +CM  IK A  T CGH+FC +C    +  K  CP C+ F+
Sbjct: 309 ELSCCVCMVKIKGASFTPCGHTFCKLCSKELMAQKGHCPVCSSFV 353

[Close]

BLAST of Lcy06g011610 vs. TAIR 10
Match: AT5G22750.1 (DNA/RNA helicase protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = 0


Query: 71  CPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSD--CPCC 109
           CPIC++ ++DA LT C H  C  C++   RN +   CP C
Sbjct: 794 CPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVC 833

The following BLAST results are available for this feature:

BLAST of Lcy06g011610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93471	4.1e-26	54.84	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]
P43254	2.0e-25	57.14	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]
Q8NHY2	6.3e-11	40.58	E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1	[more]
Q9R1A8	6.3e-11	40.58	E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2	[more]
Q75EN0	3.8e-08	36.36	Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya gossypii (str...	[more]

BLAST of Lcy06g011610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSN7	1.3e-51	78.99	E3 ubiquitin-protein ligase COP1-like OS=Cucurbita moschata OX=3662 GN=LOC111457...	[more]
A0A6J1K4K9	5.0e-51	80.60	E3 ubiquitin-protein ligase COP1-like OS=Cucurbita maxima OX=3661 GN=LOC11149002...	[more]
A0A6J1CL47	1.9e-50	83.46	E3 ubiquitin-protein ligase COP1-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A0A0LYH0	7.4e-47	74.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699620 PE=4 SV=1	[more]
A0A5A7TIH5	6.9e-45	73.91	E3 ubiquitin-protein ligase COP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Lcy06g011610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012622.1	1.1e-52	82.71	E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022955102.1	2.7e-51	78.99	E3 ubiquitin-protein ligase COP1-like [Cucurbita moschata]	[more]
KAG6573482.1	2.7e-51	78.99	E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023523813.1	3.5e-51	78.42	E3 ubiquitin-protein ligase COP1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994223.1	1.0e-50	80.60	E3 ubiquitin-protein ligase COP1-like [Cucurbita maxima]	[more]

BLAST of Lcy06g011610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32950.1	1.4e-26	57.14	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G19310.1	1.1e-05	33.85	RING/U-box superfamily protein	[more]
AT1G74990.1	3.1e-05	30.00	RING/U-box superfamily protein	[more]
AT3G07120.1	3.1e-05	40.00	RING/U-box superfamily protein	[more]
AT5G22750.1	1.2e-04	42.50	DNA/RNA helicase protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00049	WILMSTUMOUR	coord: 1..7 score: 20.0 coord: 24..38 score: 73.33
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 71..108 e-value: 3.5E-11 score: 42.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR44080:SF2	E3 UBIQUITIN-PROTEIN LIGASE COP1	coord: 49..127
None	No IPR available	CDD	cd16504	RING-HC_COP1	coord: 67..112 e-value: 2.38977E-18 score: 71.1354
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 58..126
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 71..108 e-value: 6.9E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 71..108 score: 11.987676
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 47..134 e-value: 1.7E-17 score: 65.3
IPR042755	E3 ubiquitin-protein ligase COP1	PANTHER	PTHR44080	E3 UBIQUITIN-PROTEIN LIGASE COP1	coord: 49..127
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 86..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g011610.1	Lcy06g011610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0009639	response to red or far red light
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity