Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTCAAGCAAAGCATCATGGAGACTGTGATCGATCGAGAGTTGCTCGTAACTCCCACCCAACGGAGTGGACATCGCCGCCTCCCAACCATTTCAAGCTAAACATGGATGCGTCCTTAGCACATGGCGAGATGAGAACATGCATGATCATCAGAAACTCAAAGGGTGAAACAATGGCAGCTATAGAAAATTTTAGGAGAACGAGTTGCTCTGTAGGGTGGGCAGAAGCACAAGCGCTTATGGAGGGTGTGCAACTAGCCTTGGATTCGGGCTTATCACCAGTCTGGGCAGAGATAGATTCCAAAATTGTGTGGAATTTACTCCATGACCATGAACAACATTTAAATGAGATTGCCCCCCTAATTCACCAACTCAATTTTTTGGCCACAAAGCATCACATAAGGGGATTTCTTCTAACTCCGAGGGAAGGTAACAAAGTAGCACACCGGTTAGCTACTCATGCTCGTACAACAAAACACTCTGAAGTCTGA
mRNA sequence
ATGGAGACTCAAGCAAAGCATCATGGAGACTGTGATCGATCGAGAGTTGCTCGTAACTCCCACCCAACGGAGTGGACATCGCCGCCTCCCAACCATTTCAAGCTAAACATGGATGCGTCCTTAGCACATGGCGAGATGAGAACATGCATGATCATCAGAAACTCAAAGGGTGAAACAATGGCAGCTATAGAAAATTTTAGGAGAACGAGTTGCTCTGTAGGGTGGGCAGAAGCACAAGCGCTTATGGAGGGTGTGCAACTAGCCTTGGATTCGGGCTTATCACCAGTCTGGGCAGAGATAGATTCCAAAATTGTGTGGAATTTACTCCATGACCATGAACAACATTTAAATGAGATTGCCCCCCTAATTCACCAACTCAATTTTTTGGCCACAAAGCATCACATAAGGGGATTTCTTCTAACTCCGAGGGAAGGTAACAAAGTAGCACACCGGTTAGCTACTCATGCTCGTACAACAAAACACTCTGAAGTCTGA
Coding sequence (CDS)
ATGGAGACTCAAGCAAAGCATCATGGAGACTGTGATCGATCGAGAGTTGCTCGTAACTCCCACCCAACGGAGTGGACATCGCCGCCTCCCAACCATTTCAAGCTAAACATGGATGCGTCCTTAGCACATGGCGAGATGAGAACATGCATGATCATCAGAAACTCAAAGGGTGAAACAATGGCAGCTATAGAAAATTTTAGGAGAACGAGTTGCTCTGTAGGGTGGGCAGAAGCACAAGCGCTTATGGAGGGTGTGCAACTAGCCTTGGATTCGGGCTTATCACCAGTCTGGGCAGAGATAGATTCCAAAATTGTGTGGAATTTACTCCATGACCATGAACAACATTTAAATGAGATTGCCCCCCTAATTCACCAACTCAATTTTTTGGCCACAAAGCATCACATAAGGGGATTTCTTCTAACTCCGAGGGAAGGTAACAAAGTAGCACACCGGTTAGCTACTCATGCTCGTACAACAAAACACTCTGAAGTCTGA
Protein sequence
METQAKHHGDCDRSRVARNSHPTEWTSPPPNHFKLNMDASLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTPREGNKVAHRLATHARTTKHSEV
Homology
BLAST of Lcy06g011200 vs. ExPASy TrEMBL
Match:
A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.3e-12
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0
Query: 20 SHPTEWTSPPPNHFKLNMDAS--LAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAE 79
SH W +P FK+N DAS L G+ +IIR+ KG +AA + SV E
Sbjct: 268 SHQPSWKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLE 327
Query: 80 AQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIRG 139
AQA +EG+ LA+D G+S V E D+ V LL D E+ +IH L ++
Sbjct: 328 AQACLEGIHLAIDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLS 387
Query: 140 FLLTPREGNKVAHRLATHA 157
++ RE N VAH +A HA
Sbjct: 388 YVAVRREANSVAHCIAQHA 406
BLAST of Lcy06g011200 vs. ExPASy TrEMBL
Match:
A0A7J9D462 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = 0
Query: 13 RSRVARNSHP-----TEWTSPPPNHFKLNMDA--SLAHGEMRTCMIIRNSKGETMAAIEN 72
RS HP +W+ PP FK+N+DA S+A+ + T IIRN +G M +
Sbjct: 152 RSSAESLKHPQPRSMVKWSPPPQGWFKVNVDAGVSIANNRVVTDFIIRNDEGFIMGSGFQ 211
Query: 73 FRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQ 132
SV AEA A++ G+Q ALD G S V E DS++V N + + +E P
Sbjct: 212 RHNLVLSVVIAEAIAVLHGLQFALDMGFSRVILESDSRLVVNNIQKSSEDYSESRPFTWD 271
Query: 133 LNFLATKHHIRGFLLTPREGNKVAHRL 153
+ LA K H F REGN AH L
Sbjct: 272 VKNLARKFHCCRFQFVAREGNGAAHAL 298
BLAST of Lcy06g011200 vs. ExPASy TrEMBL
Match:
A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 0
Query: 19 NSHPTEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWA 78
N+ W P +K+N DAS + + IIRN +G+ MA+ + SV A
Sbjct: 28 NTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMA 87
Query: 79 EAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIR 138
EA +EG+QLA G++PV E DS ++NL + L+E ++ + T+
Sbjct: 88 EAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHA 147
Query: 139 GFLLTPREGNKVAHRLATHA 157
F REGNK AH LA A
Sbjct: 148 SFNFVKREGNKAAHMLARRA 167
BLAST of Lcy06g011200 vs. ExPASy TrEMBL
Match:
A0A0D2MPE5 (RNase H domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_003G154500 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 51/147 (34.69%), Postives = 71/147 (48.30%), Query Frame = 0
Query: 13 RSRVARNSHP-----TEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIEN 72
RS HP +W+ PP +FK+N+DA L+ R + IIRN++G M
Sbjct: 61 RSSAESLKHPQPRSMVKWSPPPQGYFKINVDAGLSVANNRAVLGFIIRNAEGFIMG---- 120
Query: 73 FRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQ 132
S+ AEA A+++G+Q ALD G S V E DS++V N + + +E P
Sbjct: 121 -HNLVHSMVIAEAIAVLDGLQFALDMGFSKVILESDSRLVVNNIQKSSEDYSESRPFTWD 180
Query: 133 LNFLATKHHIRGFLLTPREGNKVAHRL 153
+ LA K F REGN AH L
Sbjct: 181 VKNLARKFLCCRFQFVAREGNGAAHAL 202
BLAST of Lcy06g011200 vs. ExPASy TrEMBL
Match:
A0A2N9EU90 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.6e-09
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 0
Query: 25 WTSPPPNHFKLNMDASL--AHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALM 84
W+ P P +K+N DA+ E+ +IIRN GE MA++ + SV EA A
Sbjct: 509 WSPPQPGRYKVNYDAAFFGDSNEVGIGVIIRNHNGEVMASLCHRIHYPHSVEAMEAYAAR 568
Query: 85 EGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTP 144
+Q+A+D GL + E DS+ V + L +H LI+ N H FL
Sbjct: 569 SAIQMAIDLGLQAIDIEGDSQTVVDALLNHAPCFTLYGNLINDTNIATQSCHFVQFLHVK 628
Query: 145 REGNKVAHRLATHARTTKHSEV 165
R+GN +AH +A A+ ++ EV
Sbjct: 629 RDGNSIAHSIAKRAKFSQPFEV 650
BLAST of Lcy06g011200 vs. NCBI nr
Match:
KAG6608327.1 (hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 88.2 bits (217), Expect = 7.2e-14
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 0
Query: 23 TEWTSPPPNHFKLNMDASLAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAEAQALM 82
+ W S P + KL++DA++ + EM G M E + A +
Sbjct: 20 SRWVSLPHDQDKLSVDATMHNEEM----------GCQMGLFE--------IPKALGKDSS 79
Query: 83 EGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFLLTP 142
G QL + +GL+ VW +++SK+VW LL D +QH EIA LI L L+ H I+GFL TP
Sbjct: 80 RGNQLGMATGLTSVWPKVNSKVVWTLLMDQDQHFIEIAHLIKHLKHLSQNHCIKGFLPTP 139
Query: 143 REGNKVAHRLATHARTTKHSEV 165
++ K H LA HA TKH E+
Sbjct: 140 KDDTKATHTLAIHAWHTKHLEI 143
BLAST of Lcy06g011200 vs. NCBI nr
Match:
TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])
HSP 1 Score: 81.6 bits (200), Expect = 6.7e-12
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0
Query: 20 SHPTEWTSPPPNHFKLNMDAS--LAHGEMRTCMIIRNSKGETMAAIENFRRTSCSVGWAE 79
SH W +P FK+N DAS L G+ +IIR+ KG +AA + SV E
Sbjct: 268 SHQPSWKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLE 327
Query: 80 AQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIRG 139
AQA +EG+ LA+D G+S V E D+ V LL D E+ +IH L ++
Sbjct: 328 AQACLEGIHLAIDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLS 387
Query: 140 FLLTPREGNKVAHRLATHA 157
++ RE N VAH +A HA
Sbjct: 388 YVAVRREANSVAHCIAQHA 406
BLAST of Lcy06g011200 vs. NCBI nr
Match:
MBA0755499.1 (hypothetical protein [Gossypium gossypioides])
HSP 1 Score: 79.3 bits (194), Expect = 3.3e-11
Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = 0
Query: 13 RSRVARNSHP-----TEWTSPPPNHFKLNMDA--SLAHGEMRTCMIIRNSKGETMAAIEN 72
RS HP +W+ PP FK+N+DA S+A+ + T IIRN +G M +
Sbjct: 152 RSSAESLKHPQPRSMVKWSPPPQGWFKVNVDAGVSIANNRVVTDFIIRNDEGFIMGSGFQ 211
Query: 73 FRRTSCSVGWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQ 132
SV AEA A++ G+Q ALD G S V E DS++V N + + +E P
Sbjct: 212 RHNLVLSVVIAEAIAVLHGLQFALDMGFSRVILESDSRLVVNNIQKSSEDYSESRPFTWD 271
Query: 133 LNFLATKHHIRGFLLTPREGNKVAHRL 153
+ LA K H F REGN AH L
Sbjct: 272 VKNLARKFHCCRFQFVAREGNGAAHAL 298
BLAST of Lcy06g011200 vs. NCBI nr
Match:
XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])
HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 0
Query: 19 NSHPTEWTSPPPNHFKLNMDASLAHGEMRTCM--IIRNSKGETMAAIENFRRTSCSVGWA 78
N+ W P +K+N DAS + + IIRN +G+ MA+ + SV A
Sbjct: 28 NTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMA 87
Query: 79 EAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIR 138
EA +EG+QLA G++PV E DS ++NL + L+E ++ + T+
Sbjct: 88 EAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHA 147
Query: 139 GFLLTPREGNKVAHRLATHA 157
F REGNK AH LA A
Sbjct: 148 SFNFVKREGNKAAHMLARRA 167
BLAST of Lcy06g011200 vs. NCBI nr
Match:
XP_039064257.1 (uncharacterized protein LOC120209283 [Hibiscus syriacus])
HSP 1 Score: 75.5 bits (184), Expect = 4.8e-10
Identity = 52/140 (37.14%), Postives = 70/140 (50.00%), Query Frame = 0
Query: 20 SHP----TEWTSPPPNHFKLNMDASLAH--GEMRTCMIIRNSKGETMAAIENFRRTSCSV 79
+HP T W P K+N DAS +H E + +IIR+S GE + A + R + SV
Sbjct: 110 THPPPKQTRWLPPNAPWVKVNFDASFSHTNKEAWSGIIIRDSVGEILGAAKRKIRRATSV 169
Query: 80 GWAEAQALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKH 139
AEA A + +Q +D G E DSK + L E+ L+E+ +I FLA+K
Sbjct: 170 FAAEATAAVHAIQFRIDLGCMRAIFEGDSKTIIQKLQSDEEDLSEVGAMIWDGKFLASKL 229
Query: 140 HIRGFLLTPREGNKVAHRLA 154
H F T R GN AH LA
Sbjct: 230 HAATFHFTQRAGNVAAHILA 249
BLAST of Lcy06g011200 vs. TAIR 10
Match:
AT2G02650.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 38/136 (27.94%), Postives = 59/136 (43.38%), Query Frame = 0
Query: 23 TEWTSPPPNHFKLNMDASLAHGE--MRTCMIIRNSKGE-TMAAIENFRRTSCSVGWAEAQ 82
++W PP K N D+ G R+ IR G + + ++CS+ AEA
Sbjct: 204 SQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSL-HAEAL 263
Query: 83 ALMEGVQLALDSGLSPVWAEIDSKIVWNLLHDHEQHLNEIAPLIHQLNFLATKHHIRGFL 142
+ +Q+ GL VW E DSK + L+++ E H + + LI+ + K
Sbjct: 264 GFLHALQVIWAHGLRYVWFESDSKSLVTLINNGEDH-SLLGTLIYDIRHWMLKLPYCSLE 323
Query: 143 LTPREGNKVAHRLATH 156
RE N A LA+H
Sbjct: 324 FVNRERNSAADALASH 337
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5C7H0P0 | 3.3e-12 | 37.41 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1 | [more] |
A0A7J9D462 | 1.6e-11 | 36.73 | Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 ... | [more] |
A0A6J1CIF1 | 1.8e-10 | 33.57 | uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A0D2MPE5 | 2.6e-09 | 34.69 | RNase H domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_003G15... | [more] |
A0A2N9EU90 | 2.6e-09 | 33.10 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6608327.1 | 7.2e-14 | 37.32 | hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
TXG50387.1 | 6.7e-12 | 37.41 | hypothetical protein EZV62_022911 [Acer yangbiense] | [more] |
MBA0755499.1 | 3.3e-11 | 36.73 | hypothetical protein [Gossypium gossypioides] | [more] |
XP_022140628.1 | 3.7e-10 | 33.57 | uncharacterized protein LOC111011237 [Momordica charantia] | [more] |
XP_039064257.1 | 4.8e-10 | 37.14 | uncharacterized protein LOC120209283 [Hibiscus syriacus] | [more] |
Match Name | E-value | Identity | Description | |
AT2G02650.1 | 2.0e-06 | 27.94 | Ribonuclease H-like superfamily protein | [more] |