Lcy06g003040 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g003040
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	BHLH domain-containing protein
Location	Chr06: 2882429 .. 2882892 (+)
RNA-Seq Expression	Lcy06g003040
Synteny	Lcy06g003040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAATTCCAACAACCCTATAGCCTCTAAAGCTAGCTGCTTTTTTTCTCATTATATAAGAACAAGGTCACCATGTCTGGCAGATCTCGTTCGAGGCAATCAGCTGGTGTAAGAATCAGCGACGAGCAGATCACGGACCTCGTTCACAAGTTGCAACAGCTGTTGCCCGAGATTCGTCGCAACAACAGGCACTCTGACAAGGTACGTGTTTGAATTCAACATGGTATCAGAACAGGAGATCGATCATTTTGAGCTTTTTTGATTTGATTGATGGGTTGGTTGTAGGTTTCAGCATCGAAGGTGTTGCAAGAGACATGCAACTACATTCGAAGTCTACATAGAGAAGTGGATGATCTGAGTGAGAGACTGTCGGAGTTGTTGGCCACATCGGACACAGCCCAAGCGGCCATTATAAGAAGCTTGCTCACGCAGTGAAACTCTTTAATTTAATTAATTATGAGATGG

mRNA sequence

CCAAATTCCAACAACCCTATAGCCTCTAAAGCTAGCTGCTTTTTTTCTCATTATATAAGAACAAGGTCACCATGTCTGGCAGATCTCGTTCGAGGCAATCAGCTGGTGTAAGAATCAGCGACGAGCAGATCACGGACCTCGTTCACAAGTTGCAACAGCTGTTGCCCGAGATTCGTCGCAACAACAGGCACTCTGACAAGGTTTCAGCATCGAAGGTGTTGCAAGAGACATGCAACTACATTCGAAGTCTACATAGAGAAGTGGATGATCTGAGTGAGAGACTGTCGGAGTTGTTGGCCACATCGGACACAGCCCAAGCGGCCATTATAAGAAGCTTGCTCACGCAGTGAAACTCTTTAATTTAATTAATTATGAGATGG

Coding sequence (CDS)

ATGTCTGGCAGATCTCGTTCGAGGCAATCAGCTGGTGTAAGAATCAGCGACGAGCAGATCACGGACCTCGTTCACAAGTTGCAACAGCTGTTGCCCGAGATTCGTCGCAACAACAGGCACTCTGACAAGGTTTCAGCATCGAAGGTGTTGCAAGAGACATGCAACTACATTCGAAGTCTACATAGAGAAGTGGATGATCTGAGTGAGAGACTGTCGGAGTTGTTGGCCACATCGGACACAGCCCAAGCGGCCATTATAAGAAGCTTGCTCACGCAGTGA

Protein sequence

MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ

Homology

[Close]

BLAST of Lcy06g003040 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-29
Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MSG-RSRSRQSAGV-RISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIR 60
          MSG RSRSRQS+G  RIS++QI DL+ KLQQLLPE+ R++R SDKVSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPEL-RDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          +LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Sbjct: 61 NLHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Lcy06g003040 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSGR--SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIR 60
          MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+RR  R SDKVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRR--RRSDKVSASKVLQETCNYIR 60

Query: 61 SLHREVDDLSERLSELLATSD--TAQAAIIRSLL 91
          +LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lcy06g003040 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-25
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 2  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLH 61
          S RSRSRQS   RI+DEQI+DLV KLQ LLPE R   R +D+V +S+VLQETCNYIRSLH
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARL--RSNDRVPSSRVLQETCNYIRSLH 62

Query: 62 REVDDLSERLSELLATSD--TAQAAIIRSLL 91
          +EVDDLSERLSELLATSD  +AQAAIIRSLL
Sbjct: 63 QEVDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]

BLAST of Lcy06g003040 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-25
Identity = 69/91 (75.82%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 2  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLH 61
          S RSRSRQS   RI+DEQI+DLV KLQ LLPE R   R +D+V +S+VLQETCNYIRSLH
Sbjct: 3  SRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARL--RSNDRVPSSRVLQETCNYIRSLH 62

Query: 62 REVDDLSERLSELLATSD--TAQAAIIRSLL 91
          +EVDDLSERLSELLATSD  +AQAAIIRSLL
Sbjct: 63 QEVDDLSERLSELLATSDMSSAQAAIIRSLL 91

[Close]

BLAST of Lcy06g003040 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-24
Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MS RSRSR S+  RI+DEQI DLV KLQ LLPE R   R +D+V +++VLQETC+YIRSL
Sbjct: 1  MSSRSRSRASSAARITDEQIGDLVSKLQALLPEARL--RSNDRVPSARVLQETCSYIRSL 60

Query: 61 HREVDDLSERLSELLATSD--TAQAAIIRSLL 91
          HREVDDLSERL+ELLA +D  TAQAA+IR LL
Sbjct: 61 HREVDDLSERLAELLAAADVSTAQAAVIRGLL 90

[Close]

BLAST of Lcy06g003040 vs. ExPASy TrEMBL
Match: A0A1S4DU40 (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+GVRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. ExPASy TrEMBL
Match: A0A0A0LQQ1 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. ExPASy TrEMBL
Match: A0A6J1GU92 (transcription factor PRE3-like OS=Cucurbita moschata OX=3662 GN=LOC111457173 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. ExPASy TrEMBL
Match: A0A6J1K5U5 (transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111490325 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSG SRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGISRSRQSSAVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. ExPASy TrEMBL
Match: A0A5D3BJ22 (Transcription factor PRE3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003000 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.9e-34
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 5  SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLHREV 64
          SRSRQS+GVRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSLHREV
Sbjct: 6  SRSRQSSGVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSLHREV 65

Query: 65 DDLSERLSELLATSDTAQAAIIRSLLTQ 93
          DDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 66 DDLSERLSELLATSDTAQAAIIRSLLTQ 91

[Close]

BLAST of Lcy06g003040 vs. NCBI nr
Match: XP_016899225.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo] >XP_038895619.1 transcription factor PRE3-like [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-36
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+GVRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSGVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. NCBI nr
Match: KAG6573012.1 (putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. NCBI nr
Match: XP_004152438.1 (transcription factor PRE3 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSSVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. NCBI nr
Match: XP_022955105.1 (transcription factor PRE3-like [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+ VRISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. NCBI nr
Match: XP_023542851.1 (transcription factor PRE3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 4.1e-35
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MSGRSRSRQS+ +RISDEQITDLVHKLQQLLPEIR  NRHSDKVSA+KVLQETCNYIRSL
Sbjct: 1  MSGRSRSRQSSAIRISDEQITDLVHKLQQLLPEIR--NRHSDKVSAAKVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          HREVDDLSERLSELLATSDTAQAAIIRSLLTQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLTQ 90

[Close]

BLAST of Lcy06g003040 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-30
Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MSG-RSRSRQSAGV-RISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIR 60
          MSG RSRSRQS+G  RIS++QI DL+ KLQQLLPE+ R++R SDKVSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPEL-RDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLHREVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          +LHREVDDLSERLSELLA SDTAQAA+IRSLLTQ
Sbjct: 61 NLHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Lcy06g003040 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-27
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MSGR--SRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIR 60
          MS R  SRSRQS   RISD+QI+DLV KLQ L+PE+RR  R SDKVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRR--RRSDKVSASKVLQETCNYIR 60

Query: 61 SLHREVDDLSERLSELLATSD--TAQAAIIRSLL 91
          +LHREVDDLS+RLSELLA++D  +A+AAIIRSLL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lcy06g003040 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-24
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 2  SGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSLH 61
          S +SRSRQ+    I+DEQI DLV +L +LLPE+  NNR S KVSAS+VLQETC+YIR+L 
Sbjct: 3  SRKSRSRQTGASMITDEQINDLVLQLHRLLPEL-ANNRRSGKVSASRVLQETCSYIRNLS 62

Query: 62 REVDDLSERLSELLATSDTAQAAIIRSLLTQ 93
          +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Sbjct: 63 KEVDDLSERLSQLLESTDSAQAALIRSLLMQ 92

[Close]

BLAST of Lcy06g003040 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 100.5 bits (249), Expect = 7.3e-22
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MSGRSRSRQSAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRSL 60
          MS R   + S   RISD+Q+ DLV KL+Q LPEI    R SDKVSASKVLQETCNYIR L
Sbjct: 1  MSNRRSRQTSNASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKL 60

Query: 61 HREVDDLSERLSELL--ATSDTAQAAIIRSLL 91
          HREVD+LS+RLS+LL     D+ +AA+IRSLL
Sbjct: 61 HREVDNLSDRLSQLLDSVDEDSPEAAVIRSLL 91

[Close]

BLAST of Lcy06g003040 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 100.5 bits (249), Expect = 7.3e-22
Identity = 59/93 (63.44%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MSGRSRSRQ-SAGVRISDEQITDLVHKLQQLLPEIRRNNRHSDKVSASKVLQETCNYIRS 60
          MS   RSRQ S+  RISD+QITDL+ KL+Q +PEIR+ NR S+ VSASKVLQETCNYIR+
Sbjct: 1  MSSSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQ-NRRSNTVSASKVLQETCNYIRN 60

Query: 61 LHREVDDLSERLSELLATSD--TAQAAIIRSLL 91
          L++E DDLS+RL++LL + D  + QAA+IRSL+
Sbjct: 61 LNKEADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

The following BLAST results are available for this feature:

BLAST of Lcy06g003040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA64	2.1e-29	78.72	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q8GW32	1.6e-26	75.53	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	1.4e-25	75.82	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.4e-25	75.82	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
A2Z730	9.9e-24	69.57	Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV...	[more]

BLAST of Lcy06g003040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DU40	3.1e-36	95.65	transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103482850 PE=4 SV=1	[more]
A0A0A0LQQ1	1.5e-35	94.57	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045430 PE=4 S...	[more]
A0A6J1GU92	1.5e-35	94.57	transcription factor PRE3-like OS=Cucurbita moschata OX=3662 GN=LOC111457173 PE=...	[more]
A0A6J1K5U5	1.3e-34	93.48	transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111490325 PE=4 ...	[more]
A0A5D3BJ22	4.9e-34	95.45	Transcription factor PRE3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Lcy06g003040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899225.1	6.4e-36	95.65	PREDICTED: transcription factor PRE3-like [Cucumis melo] >XP_038895619.1 transcr...	[more]
KAG6573012.1	3.2e-35	94.57	putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma s...	[more]
XP_004152438.1	3.2e-35	94.57	transcription factor PRE3 [Cucumis sativus]	[more]
XP_022955105.1	3.2e-35	94.57	transcription factor PRE3-like [Cucurbita moschata]	[more]
XP_023542851.1	4.1e-35	93.48	transcription factor PRE3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy06g003040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	1.5e-30	78.72	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	1.2e-27	75.53	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G47710.1	2.1e-24	67.03	BANQUO 3	[more]
AT3G28857.1	7.3e-22	64.13	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	7.3e-22	63.44	BANQUO 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84
None	No IPR available	PANTHER	PTHR46446:SF3	TRANSCRIPTION FACTOR PRE3	coord: 2..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 9..77 e-value: 9.73095E-20 score: 73.4915
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 19..61 e-value: 2.5E-5 score: 24.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 4..60 score: 10.454777
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 4..88 e-value: 1.0E-8 score: 36.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 18..78
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g003040.1	Lcy06g003040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity