Lcy05g017470 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g017470
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent DNA helicase
Location	Chr05: 30350680 .. 30350861 (-)
RNA-Seq Expression	Lcy05g017470
Synteny	Lcy05g017470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAACATGTAGGAAAACAAGTTTTCATACCACGAATTCCATTAAGTCCACCTAATGACGAAGGGTATCCATTCAAGTTCAAAAGGAAACAATTTCCAATCCGATTATGTTTTGCGATGACAATAAACAAAGCACAAGGACAAATTGTTCCTAATGTTGGATTAATCTTTTTGAACCT

mRNA sequence

ATGAGAGAACATGTAGGAAAACAAGTTTTCATACCACGAATTCCATTAAGTCCACCTAATGACGAAGGGTATCCATTCAAGTTCAAAAGGAAACAATTTCCAATCCGATTATGTTTTGCGATGACAATAAACAAAGCACAAGGACAAATTGTTCCTAATGTTGGATTAATCTTTTTGAACCT

Coding sequence (CDS)

ATGAGAGAACATGTAGGAAAACAAGTTTTCATACCACGAATTCCATTAAGTCCACCTAATGACGAAGGGTATCCATTCAAGTTCAAAAGGAAACAATTTCCAATCCGATTATGTTTTGCGATGACAATAAACAAAGCACAAGGACAAATTGTTCCTAATGTTGGATTAATCTTTTTGAACCT

Protein sequence

MREHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGLIFLN

Homology

[Close]

BLAST of Lcy05g017470 vs. ExPASy TrEMBL
Match: A0A6J1E1J0 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.0e-21
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 3   EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           +H GKQVF+PRIP+SP NDEGYPFKFKRKQFPIRLCFAMTINKAQGQ +PNVG+
Sbjct: 174 QHAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGI 227

[Close]

BLAST of Lcy05g017470 vs. ExPASy TrEMBL
Match: A0A6J1DFU4 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-20
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 3   EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           ++ GKQVF+PRIP+SP NDEGYPFKFKRKQFPIRLCFAMTINKAQGQ +PNVG+
Sbjct: 246 QNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGV 299

[Close]

BLAST of Lcy05g017470 vs. ExPASy TrEMBL
Match: A0A6J1E0L4 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111024833 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.5e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3   EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           ++ GKQVF+PRIP+SP NDEGYPFKFKRKQFPIRLC AMTINKAQGQ +PNVG+
Sbjct: 212 KNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCCAMTINKAQGQTIPNVGV 265

[Close]

BLAST of Lcy05g017470 vs. ExPASy TrEMBL
Match: A0A5B7A9C3 (ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3    EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
            +H GKQV +PRIPLSP  +EGYPF+FKRKQFPIRLCFAMTINKAQGQ +P VG+
Sbjct: 1386 QHAGKQVLLPRIPLSPAENEGYPFQFKRKQFPIRLCFAMTINKAQGQTIPYVGV 1439

[Close]

BLAST of Lcy05g017470 vs. ExPASy TrEMBL
Match: A0A5B7A5M4 (ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021511 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 3   EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           +H GKQV +PRIPLSP  +EGYPF+FKRKQFPIRLCFAMTINKAQGQ +P VG+
Sbjct: 360 QHAGKQVLLPRIPLSPAENEGYPFQFKRKQFPIRLCFAMTINKAQGQTIPYVGV 413

[Close]

BLAST of Lcy05g017470 vs. NCBI nr
Match: XP_022159149.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 3   EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           +H GKQVF+PRIP+SP NDEGYPFKFKRKQFPIRLCFAMTINKAQGQ +PNVG+
Sbjct: 174 QHAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGI 227

[Close]

BLAST of Lcy05g017470 vs. NCBI nr
Match: XP_022152307.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 3   EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           ++ GKQVF+PRIP+SP NDEGYPFKFKRKQFPIRLCFAMTINKAQGQ +PNVG+
Sbjct: 246 QNAGKQVFLPRIPMSPANDEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNVGV 299

[Close]

BLAST of Lcy05g017470 vs. NCBI nr
Match: XP_020275823.1 (ATP-dependent DNA helicase PIF1-like [Asparagus officinalis])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1   MREHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           MR+H GK+VF+PRIPLSP  DEG PFKFKRKQFPIRLCFAMTINK+QGQI+PNV +
Sbjct: 587 MRQHAGKEVFLPRIPLSPAEDEGLPFKFKRKQFPIRLCFAMTINKSQGQIIPNVAI 642

[Close]

BLAST of Lcy05g017470 vs. NCBI nr
Match: XP_012841028.1 (PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3    EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
            +HVGK VFIPRIPLSP  +EGYPFKFKRKQFPIRLCFAMTINKAQGQ +PN+G+
Sbjct: 1424 QHVGKHVFIPRIPLSPAENEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNIGV 1477

[Close]

BLAST of Lcy05g017470 vs. NCBI nr
Match: XP_012841137.1 (PREDICTED: uncharacterized protein LOC105961450 [Erythranthe guttata])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 3    EHVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
            +HVGK VFIPRIPLSP  +EGYPFKFKRKQFPIRLCFAMTINKAQGQ +PN+G+
Sbjct: 1218 QHVGKHVFIPRIPLSPAENEGYPFKFKRKQFPIRLCFAMTINKAQGQTIPNIGV 1271

[Close]

BLAST of Lcy05g017470 vs. TAIR 10
Match: AT5G28780.1 (PIF1 helicase )

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 4   HVGKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQ 50
           H GK V IPR  LSPP  E +PF  +R+QFP+R+C+AMTI K QGQ
Sbjct: 229 HAGKMVSIPRFILSPPQSE-HPFTLRRQQFPMRVCYAMTIIKNQGQ 273

[Close]

BLAST of Lcy05g017470 vs. TAIR 10
Match: AT3G51700.1 (PIF1 helicase )

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-08
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 6   GKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           G++V IPRIP S   +  +P K +R+QFP++L FAMTI+++Q Q +  VG+
Sbjct: 233 GEKVLIPRIP-SDLREAKFPIKMRRRQFPVKLAFAMTIDESQRQTLSKVGI 282

[Close]

BLAST of Lcy05g017470 vs. TAIR 10
Match: AT3G51690.1 (PIF1 helicase )

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 6   GKQVFIPRIPLSPPNDEGYPFKFKRKQFPIRLCFAMTINKAQGQIVPNVGL 57
           GK+++IPRI  S P +  +P + +R Q+P++L FAMTI+++Q   +  VGL
Sbjct: 229 GKKIWIPRI-ASYPTETNFPLQMRRTQYPLKLAFAMTIDESQVHTLSKVGL 278

The following BLAST results are available for this feature:

BLAST of Lcy05g017470 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g017470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1J0	7.0e-21	85.19	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 S...	[more]
A0A6J1DFU4	5.9e-20	83.33	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 S...	[more]
A0A6J1E0L4	6.5e-19	81.48	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111024833 PE=3 S...	[more]
A0A5B7A9C3	1.2e-17	77.78	ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV...	[more]
A0A5B7A5M4	1.2e-17	77.78	ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021...	[more]

BLAST of Lcy05g017470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159149.1	1.4e-20	85.19	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_022152307.1	1.2e-19	83.33	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_020275823.1	1.6e-19	80.36	ATP-dependent DNA helicase PIF1-like [Asparagus officinalis]	[more]
XP_012841028.1	2.1e-19	83.33	PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata]	[more]
XP_012841137.1	2.1e-19	83.33	PREDICTED: uncharacterized protein LOC105961450 [Erythranthe guttata]	[more]

BLAST of Lcy05g017470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28780.1	2.5e-10	60.87	PIF1 helicase	[more]
AT3G51700.1	3.9e-08	47.06	PIF1 helicase	[more]
AT3G51690.1	3.3e-07	43.14	PIF1 helicase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23274:SF30	PUTATIVE-RELATED	coord: 3..53
None	No IPR available	PANTHER	PTHR23274	DNA HELICASE-RELATED	coord: 3..53
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 20..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g017470.1	Lcy05g017470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003678	DNA helicase activity