Lcy05g014820 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g014820
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionSWIM-type domain-containing protein
LocationChr05: 18262987 .. 18264460 (-)
RNA-Seq ExpressionLcy05g014820
SyntenyLcy05g014820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTTCTCTTTCCTTTTTGTCTTTTCCCATTCCAACTTTTCTTTCTCTTTCCTCACGTGAACCCTCCCTCCCTCTTCTTTCTTTTTTCTATTCTCTCTTTCTTCTTCATCCCATTTCCTCCTACCCGATTTCTTTCTCCCTCTCTTTTCTCCTTCCCTTTCTTTCTCATTCACTCCTTCTCATTCTCCGGCGTCGGCAGACTCGGCACACCAAGACTTCGTTCGTTTTTTTTTCTTCTCTTTTTTCTTATTCTTCCTCACTAATCTCTCTTTCTTCTTCTTTCCCTCTCTTTCTCTTTTTCCTCTTTTTTCTTCCCTTCTTTTCTCCTCTTCCTCATGCTTCAAACCCTCACAAAAACTTCCAAGAAAAAATCTCATCTCAAAGAAGAAAACCTCATCTCAAGTCACAAAACCGACAAAATCGACCGACCGACCGTGTTTTTGGTCGGTCGGTTTCAGAGAGCGTTCAAAAACTTCCGGCCACCGACCGACTGAAACCGATAGGTCGGTTGTCGGCGTCGGTTTTTGCCCAAAACCGACTCCGACCGACCGACGAACACCCCTACTTGCCATCATGTTGTTCAATGTATCCTCTACTTGAAAAAACGACCCGAAGAATTTGTGGATGCTTACTACTCTAAAGAATCATTGGTGAAAATGTATTCATTCTTTTTAGAGCTTGTTAATGGACACAACTTATGGCCTAAATCGAATTATGACCCGATACAACCACCTATGATACGAAAACCGCCAAGGAGACCAAGACGACAAAGGAAGAGGGATGTGGATGAGGCTTCTTCTTCCCAACGATTTAAGCTTTGTGGACCTACTATTCGATGTAGTAAATGTAAAGGGGTAGGTCATAATTCTCGATCATGTAAAGGACTCGTGGCTAGGAGGAGGAAACAAACTAGAGGAGGAATGACTTTTATGGGATTCACAATCCCAAACATGGTAAATAACTTGTTTAATTAATTATGTATTTTTTTTATTTAAAATTCTTTCATGTACCTTAAATGTGTCCATCTTGCCTAGGAGAGAGATTCTTCACAACAACCTCAACTTTCTGGAGCTACGACAATATGAGACCTTGACCCACAACTGCCTCAATCTTCGGGATCTATACATACACGACAAGAGTAGGCATCAACCATCAATTTTTGTCTCACAATCGACTCTCTAACTTCTTCAGGTATTATTTTTCCATCGCCTCTTCGGCTTATTCGTGATTTGCAAGCTTAATGCAATCTTCATATTAAGTTTTGTTTTGTAGGATTGACAATGGTAGACATCAATCTCCAATTTCCATTTTTTGGAGGCTTCTTCAAGATGTGTTTTGTAGCAAGAGATGACATCTCTAAAAGTTTCTTCAAATTGGACATTTGCACCGGATGCATTATGGATCTAAAAATTAATTTTGTAAAAGGATATTTTGTTAAAAGGAAACCTATTTTGTTGGTTTAAGAATTTTGGG

mRNA sequence

CTCTTTCTCTTTCCTTTTTGTCTTTTCCCATTCCAACTTTTCTTTCTCTTTCCTCACGTGAACCCTCCCTCCCTCTTCTTTCTTTTTTCTATTCTCTCTTTCTTCTTCATCCCATTTCCTCCTACCCGATTTCTTTCTCCCTCTCTTTTCTCCTTCCCTTTCTTTCTCATTCACTCCTTCTCATTCTCCGGCGTCGGCAGACTCGGCACACCAAGACTTCGTTCGTTTTTTTTTCTTCTCTTTTTTCTTATTCTTCCTCACTAATCTCTCTTTCTTCTTCTTTCCCTCTCTTTCTCTTTTTCCTCTTTTTTCTTCCCTTCTTTTCTCCTCTTCCTCATGCTTCAAACCCTCACAAAAACTTCCAAGAAAAAATCTCATCTCAAAGAAGAAAACCTCATCTCAAGTCACAAAACCGACAAAATCGACCGACCGACCGTGTTTTTGGTCGGTCGGTTTCAGAGAGCGTTCAAAAACTTCCGGCCACCGACCGACTGAAACCGATAGGTCGGTTGTCGGCGTCGGTTTTTGCCCAAAACCGACTCCGACCGACCGACGAACACCCCTACTTGCCATCATGTTGTTCAATGTATCCTCTACTTGAAAAAACGACCCGAAGAATTTGTGGATGCTTACTACTCTAAAGAATCATTGGTGAAAATGTATTCATTCTTTTTAGAGCTTGTTAATGGACACAACTTATGGCCTAAATCGAATTATGACCCGATACAACCACCTATGATACGAAAACCGCCAAGGAGACCAAGACGACAAAGGAAGAGGGATGTGGATGAGGCTTCTTCTTCCCAACGATTTAAGCTTTGTGGACCTACTATTCGATGTAGTAAATGTAAAGGGGTAGGTCATAATTCTCGATCATGTAAAGGACTCGTGGCTAGGAGGAGGAAACAAACTAGAGGAGGAATGACTTTTATGGGATTCACAATCCCAAACATGGAGAGAGATTCTTCACAACAACCTCAACTTTCTGGAGCTACGACAATATGAGACCTTGACCCACAACTGCCTCAATCTTCGGGATCTATACATACACGACAAGAGTAGGCATCAACCATCAATTTTTGTCTCACAATCGACTCTCTAACTTCTTCAGGATTGACAATGGTAGACATCAATCTCCAATTTCCATTTTTTGGAGGCTTCTTCAAGATGTGTTTTGTAGCAAGAGATGACATCTCTAAAAGTTTCTTCAAATTGGACATTTGCACCGGATGCATTATGGATCTAAAAATTAATTTTGTAAAAGGATATTTTGTTAAAAGGAAACCTATTTTGTTGGTTTAAGAATTTTGGG

Coding sequence (CDS)

ATGTATTCATTCTTTTTAGAGCTTGTTAATGGACACAACTTATGGCCTAAATCGAATTATGACCCGATACAACCACCTATGATACGAAAACCGCCAAGGAGACCAAGACGACAAAGGAAGAGGGATGTGGATGAGGCTTCTTCTTCCCAACGATTTAAGCTTTGTGGACCTACTATTCGATGTAGTAAATGTAAAGGGGTAGGTCATAATTCTCGATCATGTAAAGGACTCGTGGCTAGGAGGAGGAAACAAACTAGAGGAGGAATGACTTTTATGGGATTCACAATCCCAAACATGGAGAGAGATTCTTCACAACAACCTCAACTTTCTGGAGCTACGACAATATGA

Protein sequence

MYSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIRCSKCKGVGHNSRSCKGLVARRRKQTRGGMTFMGFTIPNMERDSSQQPQLSGATTI
Homology
BLAST of Lcy05g014820 vs. ExPASy TrEMBL
Match: A0A151SBM5 (SWIM-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_025963 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 2   YSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIRC 61
           YS      NG NLWP  + +PI+PP++R+ P RP++QRKR +DE  +  +      TI+C
Sbjct: 100 YSHISMPSNGPNLWPIVHCEPIKPPLMRRAPGRPKKQRKRSIDEPQNPHKLPRQHTTIKC 159

Query: 62  SKCKGVGHNSRSCKGLVARRRKQTRG 88
            KC+  GHN R+CKG     R+  +G
Sbjct: 160 KKCENFGHNKRTCKGKTVADREIPKG 185

BLAST of Lcy05g014820 vs. ExPASy TrEMBL
Match: A0A1U8KIG2 (uncharacterized protein LOC107917391 OS=Gossypium hirsutum OX=3635 GN=LOC107917391 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 0

Query: 1   MYSFFLELVNGHNLWPK-SNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTI 60
           +YS F+ LV G   W   SN  PI PP +R+P  RP + R+ + DE  +++R    G  I
Sbjct: 141 IYSNFVSLVRGPKQWASLSNMPPILPPPLRRPSGRPTKVRREEPDEPQTTERLSKRGVEI 200

Query: 61  RCSKCKGVGHNSRSCKGLVARR---RKQTRGGMTFMGFTIPNMERDSSQQPQLSGATT 115
           RC KCK VGHN RSCKG V +    ++   G +T    T    E   +QQ  L+   T
Sbjct: 201 RCGKCKRVGHNKRSCKGEVGQNILVKRHKVGVLTQQQATPNQQEGTPTQQAALTQLPT 258

BLAST of Lcy05g014820 vs. ExPASy TrEMBL
Match: A0A6P8DW92 (uncharacterized protein LOC116208272 OS=Punica granatum OX=22663 GN=LOC116208272 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 1   MYSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIR 60
           +Y FF++   G   W KSN DP+QPP +++PP RP++QRK+  +E     + K     I 
Sbjct: 65  LYGFFIKPTAGEEYWTKSNEDPVQPPKLKRPPGRPKKQRKKGAEEPKDPYKLKRSLGPIV 124

Query: 61  CSKCKGVGHNSRSCKG 77
           C KC G  HN R+CKG
Sbjct: 125 CGKCGGSKHNIRTCKG 140

BLAST of Lcy05g014820 vs. ExPASy TrEMBL
Match: A0A3Q7YH69 (uncharacterized protein LOC113788095 OS=Cicer arietinum OX=3827 GN=LOC113788095 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0

Query: 2   YSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIRC 61
           YS+ +   NG  LW  SN DPI PP++R+ P RP+++R +  DE+  S +      T++C
Sbjct: 198 YSYIIMPSNGPKLWHASNGDPINPPIMRRAPGRPKKKRNKSNDESKGSNKLPRQFATVKC 257

Query: 62  SKCKGVGHNSRSCKGLVARRRKQTRGG 89
             C  +GHN+R+CKG  A  R+  +GG
Sbjct: 258 KNCGKLGHNTRTCKGKSATDREIPKGG 284

BLAST of Lcy05g014820 vs. ExPASy TrEMBL
Match: A0A3Q7XS19 (uncharacterized protein LOC113786690 OS=Cicer arietinum OX=3827 GN=LOC113786690 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0

Query: 2   YSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIRC 61
           YS+ +   NG  LW  SN DPI PP++R+ P RP+++R +  DE+  S +      T++C
Sbjct: 151 YSYIIMPSNGPKLWHASNGDPINPPIMRRAPGRPKKKRNKSNDESKGSNKLPRQFATVKC 210

Query: 62  SKCKGVGHNSRSCKGLVARRRKQTRGG 89
             C  +GHN+R+CKG  A  R+  +GG
Sbjct: 211 KNCGKLGHNTRTCKGKSAADREIPKGG 237

BLAST of Lcy05g014820 vs. NCBI nr
Match: KAG8481389.1 (hypothetical protein CXB51_026139 [Gossypium anomalum])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 1   MYSFFLELVNGHNLW-PKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTI 60
           +YS F+  V G   W P SN  PI PP +R+PP RP + R+++ DE  +++R    G  I
Sbjct: 569 IYSNFVSPVRGPKQWAPLSNMLPILPPPLRRPPGRPTKVRRKEPDEPQTTERLSKRGVEI 628

Query: 61  RCSKCKGVGHNSRSCKGLVARR--RKQTRGGMTFMGFTIPNMERDSSQQ----PQLSGAT 115
           RCSKCK VGHN RSCKG V +    K+ + G+       PN +  +S Q     QLS A 
Sbjct: 629 RCSKCKIVGHNRRSCKGEVGQNIPVKRHKVGVPTQQQATPNQQEGTSTQQASLTQLSIAP 688

BLAST of Lcy05g014820 vs. NCBI nr
Match: KAG8475439.1 (hypothetical protein CXB51_032209 [Gossypium anomalum])

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-11
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 1   MYSFFLELVNGHNLW-PKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTI 60
           +YS F+  V G   W P SN  PI PP +R+PP RP + ++++ DE  +++R    G  I
Sbjct: 569 IYSNFVSPVRGPKQWAPLSNMLPILPPPLRRPPGRPTKVKRKEPDEPQTTERLSKRGVEI 628

Query: 61  RCSKCKGVGHNSRSCKGLVARR--RKQTRGGMTFMGFTIPNMERDSSQQ----PQLSGAT 115
           RCSKCK VGHN RSCKG V +    K+ + G+       PN +  +S Q     QLS A 
Sbjct: 629 RCSKCKIVGHNRRSCKGEVGQNIPVKRHKVGVPTQQQATPNQQEGTSTQQASLTQLSIAP 688

BLAST of Lcy05g014820 vs. NCBI nr
Match: KAF7840310.1 (hypothetical protein G2W53_002608 [Senna tora])

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 33/88 (37.50%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 1   MYSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIR 60
           +Y  +++  NG  +WP++  DP+ PP +++PP RP++QRK++ +E S     K     +R
Sbjct: 347 VYEPYVKPANGIAMWPQAGGDPVMPPPLKRPPGRPKKQRKKEHNETSKPNNVKRRYGEVR 406

Query: 61  CSKCKGVGHNSRSCKGLVARRRKQTRGG 89
           C+KC+ VGHN R+CKG  +++ K ++ G
Sbjct: 407 CTKCQLVGHNRRTCKGPPSKKNKNSQAG 434

BLAST of Lcy05g014820 vs. NCBI nr
Match: KAF7140119.1 (hypothetical protein RHSIM_Rhsim06G0115000 [Rhododendron simsii])

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 1   MYSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIR 60
           +Y+  +   NG NLW ++ Y PI PP +R+P  RPR+QR+++ DE     + +  G T+ 
Sbjct: 642 VYAPLIYPTNGQNLWEETGYPPILPPPLRRPTGRPRKQRRKEPDEPKKGSKLRRSGTTVV 701

Query: 61  CSKCKGVGHNSRSCKGLVARRRKQTRGGMTFMGFTIPNMERDSSQQPQLSGATT 115
           C KC   GHN R+CKG+V        GG  F    IP     SSQ P  S   T
Sbjct: 702 CKKCGRTGHNRRTCKGVV--------GGNKF----IPG--ESSSQGPTASKRAT 741

BLAST of Lcy05g014820 vs. NCBI nr
Match: XP_020230608.1 (uncharacterized protein LOC109811316 isoform X2 [Cajanus cajan] >XP_029129784.1 uncharacterized protein LOC109811316 isoform X2 [Cajanus cajan])

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 2   YSFFLELVNGHNLWPKSNYDPIQPPMIRKPPRRPRRQRKRDVDEASSSQRFKLCGPTIRC 61
           YS      NG NLWP  + +PI+PP++R+ P RP++QRKR +DE  +  +      TI+C
Sbjct: 504 YSHISMPSNGPNLWPIVHCEPIKPPLMRRAPGRPKKQRKRSIDEPQNPHKLPRQHTTIKC 563

Query: 62  SKCKGVGHNSRSCKGLVARRRKQTRG 88
            KC+  GHN R+CKG     R+  +G
Sbjct: 564 KKCENFGHNKRTCKGKTVADREIPKG 589

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A151SBM53.3e-1141.86SWIM-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_025963 PE=4 ... [more]
A0A1U8KIG21.6e-1038.98uncharacterized protein LOC107917391 OS=Gossypium hirsutum OX=3635 GN=LOC1079173... [more]
A0A6P8DW921.6e-1043.42uncharacterized protein LOC116208272 OS=Punica granatum OX=22663 GN=LOC116208272... [more]
A0A3Q7YH692.1e-1040.23uncharacterized protein LOC113788095 OS=Cicer arietinum OX=3827 GN=LOC113788095 ... [more]
A0A3Q7XS192.1e-1040.23uncharacterized protein LOC113786690 OS=Cicer arietinum OX=3827 GN=LOC113786690 ... [more]
Match NameE-valueIdentityDescription
KAG8481389.11.8e-1142.15hypothetical protein CXB51_026139 [Gossypium anomalum][more]
KAG8475439.14.0e-1141.32hypothetical protein CXB51_032209 [Gossypium anomalum][more]
KAF7840310.15.2e-1137.50hypothetical protein G2W53_002608 [Senna tora][more]
KAF7140119.16.8e-1138.60hypothetical protein RHSIM_Rhsim06G0115000 [Rhododendron simsii][more]
XP_020230608.16.8e-1141.86uncharacterized protein LOC109811316 isoform X2 [Cajanus cajan] >XP_029129784.1 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g014820.1Lcy05g014820.1mRNA