Lcy04g023790 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g023790
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Chr04: 54926190 .. 54927333 (-)
RNA-Seq Expression	Lcy04g023790
Synteny	Lcy04g023790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTACTTCTCCATCGCATCTCTCTCTCTCTCTCTCTGCTTATTTCTCTCAACAACTATGGTTACCCAAAAGCGCTTTCCACTGCAGCTACTCCTTCTCATCATCTGCTTCTTCTCTAACTAGCTACCCGGCCTACCCCTCTTTCTCTATTTTCACTTCATTCATTCATCATCTAAATCTAAAAGTCATGTTGGCCATGGAAGCTGCCTCCGCCATCAACAGTTACAGCTCCACCTCCGACACCCACCACCTCCAGTATCCTCTCTTGGTTCCCCCGCCACCATCACCACCGCCAGCTGCAGTCAGCAGGTATACATTTAAAACATCCTTTCTTGGAAATAAATTACAAAATATATTTAAAAGAATTTTGAAGAAATAGGGAAAAATAAGAAATACGAATATGTTAGCAATCGGCGTATAATATATATAAGTTGTTGTAACTATATAACACAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCTCCACTAACACTGTCCCGGTGCAGCGGGGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGAAAGACCAAGGTCCACACCTCCTGCTGCCCGTTCTTCGGCCACCCACACCCCCCTGCCCCCTGCCCCTGCCCGCTCCGGCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTTAGAGACTCGCAGGCCAAGGCCAGAGGGATCGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCCCCTCTCAAGAAGCACCAACGCCACGCCCCAGACGAACCCATGGCTCTGTTGGATCAGTCCGCTTGACCAATAGTATTGATTAATTAATTAATTAATATGCTGTTTTTGTTGTAATTAAATTAAATTAAAATCAGAGATGTAATGTAATTTGTAGAAGCCAAGCTATGTCGTTAACGGCCATGGCAGTGTGTTCTTCTTCCCCACTGGACCTAGATTTTTCCTTTATCCAATTAGCTTGTTTTTGTTAATTGTCTTTTGGAAACCCCCAAGAATATAATTAGTATTTT

mRNA sequence

CTTTTACTTCTCCATCGCATCTCTCTCTCTCTCTCTCTGCTTATTTCTCTCAACAACTATGGTTACCCAAAAGCGCTTTCCACTGCAGCTACTCCTTCTCATCATCTGCTTCTTCTCTAACTAGCTACCCGGCCTACCCCTCTTTCTCTATTTTCACTTCATTCATTCATCATCTAAATCTAAAAGTCATGTTGGCCATGGAAGCTGCCTCCGCCATCAACAGTTACAGCTCCACCTCCGACACCCACCACCTCCAGTATCCTCTCTTGGTTCCCCCGCCACCATCACCACCGCCAGCTGCAGTCAGCAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCTCCACTAACACTGTCCCGGTGCAGCGGGGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGAAAGACCAAGGTCCACACCTCCTGCTGCCCGTTCTTCGGCCACCCACACCCCCCTGCCCCCTGCCCCTGCCCGCTCCGGCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTTAGAGACTCGCAGGCCAAGGCCAGAGGGATCGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCCCCTCTCAAGAAGCACCAACGCCACGCCCCAGACGAACCCATGGCTCTGTTGGATCAGTCCGCTTGACCAATAGTATTGATTAATTAATTAATTAATATGCTGTTTTTGTTGTAATTAAATTAAATTAAAATCAGAGATGTAATGTAATTTGTAGAAGCCAAGCTATGTCGTTAACGGCCATGGCAGTGTGTTCTTCTTCCCCACTGGACCTAGATTTTTCCTTTATCCAATTAGCTTGTTTTTGTTAATTGTCTTTTGGAAACCCCCAAGAATATAATTAGTATTTT

Coding sequence (CDS)

ATGTTGGCCATGGAAGCTGCCTCCGCCATCAACAGTTACAGCTCCACCTCCGACACCCACCACCTCCAGTATCCTCTCTTGGTTCCCCCGCCACCATCACCACCGCCAGCTGCAGTCAGCAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTACCTAAAGAACCACCGCCCTCCACTAACACTGTCCCGGTGCAGCGGGGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGAAAGACCAAGGTCCACACCTCCTGCTGCCCGTTCTTCGGCCACCCACACCCCCCTGCCCCCTGCCCCTGCCCGCTCCGGCAGGCCTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTTAGAGACTCGCAGGCCAAGGCCAGAGGGATCGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCCCCTCTCAAGAAGCACCAACGCCACGCCCCAGACGAACCCATGGCTCTGTTGGATCAGTCCGCTTGA

Protein sequence

MLAMEAASAINSYSSTSDTHHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLKKHQRHAPDEPMALLDQSA

Homology

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BLAST of Lcy04g023790 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-69
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 39  VSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 98
           +SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  HPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 158
           HP+PPAPC CPLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIAYEKKKRKK 172
           ARGI+YEKKKRK+
Sbjct: 166 ARGISYEKKKRKR 178

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BLAST of Lcy04g023790 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-69
Identity = 119/146 (81.51%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 30  PPPSPPPAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKV 89
           P PS    ++SRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKV
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 90  HTSCCPFFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYL 149
           HT  CPF+GHP+PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 150 REVRDSQAKARGIAYEKKKRKKSAMA 176
           REVR++QA+ARGI+YEKKKRKK + A
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSA 214

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BLAST of Lcy04g023790 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-69
Identity = 119/146 (81.51%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 30  PPPSPPPAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKV 89
           P PS    ++SRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKV
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKV 128

Query: 90  HTSCCPFFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYL 149
           HT  CPF+GHP+PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYL
Sbjct: 129 HTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYL 188

Query: 150 REVRDSQAKARGIAYEKKKRKKSAMA 176
           REVR++QA+ARGI+YEKKKRKK + A
Sbjct: 189 REVRETQARARGISYEKKKRKKPSSA 214

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BLAST of Lcy04g023790 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.4e-69
Identity = 121/163 (74.23%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 36  PAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCP 95
           P + SRYE+QKRRDWNTFGQYL+NHRPPL+L++CSGAH+LEFLRYLDQFGKTKVHT+ CP
Sbjct: 36  PQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACP 95

Query: 96  FFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDS 155
           FFGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF  RAVRLYLREVR+ 
Sbjct: 96  FFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREH 155

Query: 156 QAKARGIAYEKKKRKKSAMAPLK--------KHQRHAPDEPMA 191
           QA+ARG++YEKKKRKK     L+         HQ H P  P A
Sbjct: 156 QARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPPPPPA 198

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BLAST of Lcy04g023790 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 7.4e-69
Identity = 121/163 (74.23%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 36  PAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCP 95
           P + SRYE+QKRRDWNTFGQYL+NHRPPL+L++CSGAH+LEFLRYLDQFGKTKVHT+ CP
Sbjct: 36  PQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACP 95

Query: 96  FFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDS 155
           FFGHP PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF  RAVRLYLREVR+ 
Sbjct: 96  FFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREH 155

Query: 156 QAKARGIAYEKKKRKKSAMAPLK--------KHQRHAPDEPMA 191
           QA+ARG++YEKKKRKK     L+         HQ H P  P A
Sbjct: 156 QARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPPPPPA 198

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BLAST of Lcy04g023790 vs. ExPASy TrEMBL
Match: A0A6J1IPW9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111478381 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.7e-98
Identity = 182/203 (89.66%), Postives = 185/203 (91.13%), Query Frame = 0


Query: 1   MLAMEAASAINSYS-------STSDTHHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTF 60
           MLAME+ASA+NSYS       STSD HH  YPLL P PPSPPP A+SRYESQKRRDWNTF
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHH-HYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQA 120
           GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSA 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KKRKKSA
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKSA 180

Query: 181 MAPLKKHQRHAPDEPMALLDQSA 197
           MAPLKKHQRHAPDEPM L D SA
Sbjct: 181 MAPLKKHQRHAPDEPMPLTDHSA 201

[Close]

BLAST of Lcy04g023790 vs. ExPASy TrEMBL
Match: A0A6J1ED05 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433058 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.7e-97
Identity = 174/190 (91.58%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDT--HHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQYLK 60
           MLAME+ S   + +STSD   HHLQYPLL P PPSPPP A+SRYESQKRRDWNTFGQYLK
Sbjct: 1   MLAMESVSTSTTTTSTSDNHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWGSLD 120
           NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLK 180
           ALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLK
Sbjct: 121 ALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLK 180

Query: 181 KHQRHAPDEP 189
           KHQRHAPDEP
Sbjct: 181 KHQRHAPDEP 190

[Close]

BLAST of Lcy04g023790 vs. ExPASy TrEMBL
Match: A0A6J1KTK1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497493 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.0e-88
Identity = 167/199 (83.92%), Postives = 173/199 (86.93%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDTHHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQYLKNH 60
           MLA+EA+S           +HL YPLLV   PSP P A SRYESQKRRDWNTFGQYLKNH
Sbjct: 1   MLALEASS----------DNHLPYPLLV---PSPHPPAPSRYESQKRRDWNTFGQYLKNH 60

Query: 61  RPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWGSLDAL 120
           RPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPP PCPCPLRQAWGSLDAL
Sbjct: 61  RPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPVPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLKKH 180
           IGRLRAAFEENGGHPETNPFG+RAVRLYLREVRDSQAKARGIAYEKKKRKKSA+APLKKH
Sbjct: 121 IGRLRAAFEENGGHPETNPFGSRAVRLYLREVRDSQAKARGIAYEKKKRKKSALAPLKKH 180

Query: 181 QRHA---PDEPMALLDQSA 197
           QRHA    D+PM  LD SA
Sbjct: 181 QRHAHAQEDQPMLFLDHSA 186

[Close]

BLAST of Lcy04g023790 vs. ExPASy TrEMBL
Match: A0A6J1EEK9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433516 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.7e-88
Identity = 166/199 (83.42%), Postives = 172/199 (86.43%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDTHHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQYLKNH 60
           MLA+EA S           +HLQYPLLV   PSP P A +RYESQKRRDWNTFGQYLKNH
Sbjct: 1   MLALEAPS----------DNHLQYPLLV---PSPHPPAPTRYESQKRRDWNTFGQYLKNH 60

Query: 61  RPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWGSLDAL 120
           RPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPP PCPCPLRQAWGSLDAL
Sbjct: 61  RPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPVPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLKKH 180
           IGRLRAAFEENGGHPETNPFG+RAVRLYLREVRDSQAKARGIAYEKKKRKKSA+ PLKKH
Sbjct: 121 IGRLRAAFEENGGHPETNPFGSRAVRLYLREVRDSQAKARGIAYEKKKRKKSALPPLKKH 180

Query: 181 QRHA---PDEPMALLDQSA 197
           QRHA    D+PM  LD SA
Sbjct: 181 QRHAHAREDQPMLFLDHSA 186

[Close]

BLAST of Lcy04g023790 vs. ExPASy TrEMBL
Match: A0A5A7UB86 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009900 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 163/189 (86.24%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 1   MLAMEAA-SAINSYSSTSDT--HHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQYL 60
           MLAMEAA SA+ SY+S S T  +HL YPLL+P PPSPP  A+SRYESQKRRDWNTFGQYL
Sbjct: 1   MLAMEAASSAVTSYTSASTTSDNHLHYPLLLPAPPSPPTPALSRYESQKRRDWNTFGQYL 60

Query: 61  KNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWGSL 120
           KNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFGHP PPAPCPCPLRQAWGSL
Sbjct: 61  KNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFGHPQPPAPCPCPLRQAWGSL 120

Query: 121 DALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPL 180
           DALIGRLRAAFEENGG PETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKKSAMA L
Sbjct: 121 DALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSAMASL 180

Query: 181 K-KHQRHAP 186
           K  H +  P
Sbjct: 181 KINHHQPMP 189

[Close]

BLAST of Lcy04g023790 vs. NCBI nr
Match: XP_022978370.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98
Identity = 182/203 (89.66%), Postives = 185/203 (91.13%), Query Frame = 0


Query: 1   MLAMEAASAINSYS-------STSDTHHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTF 60
           MLAME+ASA+NSYS       STSD HH  YPLL P PPSPPP A+SRYESQKRRDWNTF
Sbjct: 1   MLAMESASAVNSYSSASTTTTSTSDNHH-HYPLLEPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQA 120
           GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSA 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE KKRKKSA
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYE-KKRKKSA 180

Query: 181 MAPLKKHQRHAPDEPMALLDQSA 197
           MAPLKKHQRHAPDEPM L D SA
Sbjct: 181 MAPLKKHQRHAPDEPMPLTDHSA 201

[Close]

BLAST of Lcy04g023790 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98
Identity = 177/196 (90.31%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDT--------HHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNT 60
           MLAME+ASA+NSY+S S T        HHL YPLL P PPSPPP A+SRYESQKRRDWNT
Sbjct: 1   MLAMESASAVNSYTSASTTTTSTSDNHHHLHYPLLEPAPPSPPPPALSRYESQKRRDWNT 60

Query: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQ 120
           FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQ
Sbjct: 61  FGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKS 180
           AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKS
Sbjct: 121 AWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKS 180

Query: 181 AMAPLKKHQRHAPDEP 189
           AMAPLKKHQRHAPDEP
Sbjct: 181 AMAPLKKHQRHAPDEP 196

[Close]

BLAST of Lcy04g023790 vs. NCBI nr
Match: XP_022925731.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 174/190 (91.58%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDT--HHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQYLK 60
           MLAME+ S   + +STSD   HHLQYPLL P PPSPPP A+SRYESQKRRDWNTFGQYLK
Sbjct: 1   MLAMESVSTSTTTTSTSDNHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWGSLD 120
           NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLD 120

Query: 121 ALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLK 180
           ALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLK
Sbjct: 121 ALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLK 180

Query: 181 KHQRHAPDEP 189
           KHQRHAPDEP
Sbjct: 181 KHQRHAPDEP 190

[Close]

BLAST of Lcy04g023790 vs. NCBI nr
Match: KAG6581495.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034783.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.7 bits (927), Expect = 4.0e-96
Identity = 174/193 (90.16%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDT-----HHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTFGQ 60
           MLAME+ S   + +STSD      HHLQYPLL P PPSPPP A+SRYESQKRRDWNTFGQ
Sbjct: 1   MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQ 60

Query: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQAWG 120
           YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQAWG
Sbjct: 61  YLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWG 120

Query: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180
           SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA
Sbjct: 121 SLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMA 180

Query: 181 PLKKHQRHAPDEP 189
           PLKKHQRHAPDEP
Sbjct: 181 PLKKHQRHAPDEP 193

[Close]

BLAST of Lcy04g023790 vs. NCBI nr
Match: XP_038881876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 349.0 bits (894), Expect = 2.7e-92
Identity = 172/203 (84.73%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 1   MLAMEAASAINSYSSTSDT-------HHLQYPLLVPPPPSPPPAAVSRYESQKRRDWNTF 60
           MLAM+AASA+NSY+S S T       HH QYPLLVP PPSPPP A+SRYESQKRRDWNTF
Sbjct: 1   MLAMQAASAVNSYTSASTTTSNSDNHHHRQYPLLVPAPPSPPPPALSRYESQKRRDWNTF 60

Query: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPHPPAPCPCPLRQA 120
           GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHP PPAPCPCPLRQA
Sbjct: 61  GQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSA 180
           WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVR+SQAKARGIAYEKKKRKKS 
Sbjct: 121 WGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRESQAKARGIAYEKKKRKKSG 180

Query: 181 MAPLKKHQRHAPDEPMALLDQSA 197
           M  +KK+Q      PM LLD SA
Sbjct: 181 MPSVKKNQ------PMPLLDHSA 197

[Close]

BLAST of Lcy04g023790 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-70
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 39  VSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 98
           +SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 99  HPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 158
           HP+PPAPC CPLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 159 ARGIAYEKKKRKK 172
           ARGI+YEKKKRK+
Sbjct: 166 ARGISYEKKKRKR 178

[Close]

BLAST of Lcy04g023790 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 261.5 bits (667), Expect = 5.3e-70
Identity = 119/139 (85.61%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 33  SPPPAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS 92
           S P A  SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT+
Sbjct: 46  SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTN 105

Query: 93  CCPFFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREV 152
            C F+GHP+PPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREV
Sbjct: 106 ICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREV 165

Query: 153 RDSQAKARGIAYEKKKRKK 172
           RD Q+KARG++YEKKKRK+
Sbjct: 166 RDMQSKARGVSYEKKKRKR 184

[Close]

BLAST of Lcy04g023790 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-66
Identity = 111/139 (79.86%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 33  SPPPAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS 92
           S PPA  SRYESQKRRDWNTF QYLKNH+PPL LSRCSGAH++EFL+YLDQFGKTKVH +
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 93  CCPFFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREV 152
            CP+FGH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF  RAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 153 RDSQAKARGIAYEKKKRKK 172
           R+SQAKARGI YEKKKRK+
Sbjct: 143 RESQAKARGIPYEKKKRKR 161

[Close]

BLAST of Lcy04g023790 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-63
Identity = 109/141 (77.30%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 36  PAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCP 95
           P + SRYE+QKRRDWNTF QYL+NHRPPL+L  CSGAH+LEFLRYLDQFGKTKVH   C 
Sbjct: 20  PPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCA 79

Query: 96  FFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDS 155
           FFG P+PPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFG+RAVRL+LREVRD 
Sbjct: 80  FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDF 139

Query: 156 QAKARGIAYEKKKRKKSAMAP 177
           QAKARG++YEKK+++ +   P
Sbjct: 140 QAKARGVSYEKKRKRVNRQKP 160

[Close]

BLAST of Lcy04g023790 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.5 bits (589), Expect = 5.9e-61
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 33  SPPPAAVSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS 92
           S PP   SRYESQKRRDWNTFGQYLKN RPP+ +S CS  H+L+FLRYLDQFGKTKVH  
Sbjct: 17  SEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVP 76

Query: 93  CCPFFGHPHPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREV 152
            C F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EENGG PETNPF + A+R+YLREV
Sbjct: 77  GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREV 136

Query: 153 RDSQAKARGIAYEKKKRKK 172
           R+ QAKARGI Y+KKK+KK
Sbjct: 137 RECQAKARGIPYKKKKKKK 155

The following BLAST results are available for this feature:

BLAST of Lcy04g023790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	2.0e-69	90.23	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	3.3e-69	81.51	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	3.3e-69	81.51	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2XVI8	7.4e-69	74.23	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	7.4e-69	74.23	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]

BLAST of Lcy04g023790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPW9	2.7e-98	89.66	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ED05	8.7e-97	91.58	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTK1	2.0e-88	83.92	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EEK9	5.7e-88	83.42	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7UB86	1.2e-85	86.24	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Lcy04g023790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978370.1	5.6e-98	89.66	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_023544575.1	5.6e-98	90.31	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022925731.1	1.8e-96	91.58	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]
KAG6581495.1	4.0e-96	90.16	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_038881876.1	2.7e-92	84.73	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]

BLAST of Lcy04g023790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	1.4e-70	90.23	Protein of unknown function (DUF640)	[more]
AT2G31160.1	5.3e-70	85.61	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.0e-66	79.86	Protein of unknown function (DUF640)	[more]
AT5G28490.1	1.6e-63	77.30	Protein of unknown function (DUF640)	[more]
AT2G42610.1	5.9e-61	76.26	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 34..154 e-value: 5.4E-66 score: 220.5
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 41..168 score: 84.350983
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..44
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 16..181
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 16..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g023790.1	Lcy04g023790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus