Lcy04g013450 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g013450
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonucleoside-diphosphate reductase
LocationChr04: 45487388 .. 45488240 (+)
RNA-Seq ExpressionLcy04g013450
SyntenyLcy04g013450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGTGCCGATGCTGCAGGTTTTCAATGATACTGCTCGATATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTAGTGTGCTATTTTGATCCCATTAAGTTTTATATGATCGATATTCATATTCTCACATTATAACTGCCTCTTGCAGGTGCTTTTGCTGTTTACTTGGAGCCATGGCATGCTGATGTATTTGAGGTTTTGGATCTCAGAAAGAACCATGGAAAAGTAATTACTTTTTGCTGATTTATTTAGTGGATATTATGCAACATTTTATTCATTTGATTCTAAAATGAGTATTCAAATATTTTTAGCATACACTTTTAATACATAAGTGCTAAATGTCTTAATATTGCAACTGTTTACAACAACAAATTCACCACTGAAGAACTAACTCCCTGAAAATATATTGCCCATATAAGAAAATACGTAAATCAGCCTGATGATCTAAGAGCTATTTACAAGTATGATTGATCTTCCTTCCTGAAAATATTTTTACAAGTATGATTGATCTCCCTGAAAATATTTTTAGCATACACTTTTAATACATAAGTGCTAAATGTCTCTCTCCATTCCATCCTCCAGTGGTGAATTTGTTGTTGTGAACAAGCATCTCCTGCATGACTTGACAGAGATGGGTTTATGGTCTCCTGCACTGAAGAATAAGATTCTCTATGAGAGTGACTCTGTTCAGAAGATTCAAGAAATCCCTGATGATCTAAGAGCTATTTACAAGTATGATTGATCTTCCTTGCATTTCCCATTCCTTGCCCTTGATGTTGATTTGTCCTTCTGACTTGTTCTTTATATATTTGAACTCAGAACCGTTTGGGAGATCAAGCAAAAGACATAA

mRNA sequence

ATGGGGTTGTGCCGATGCTGCAGGTTTTCAATGATACTGCTCGATATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTGCTTTTGCTGTTTACTTGGAGCCATGGCATGCTGATGTATTTGAGGTTTTGGATCTCAGAAAGAACCATGGAAAATGGTGAATTTGTTGTTGTGAACAAGCATCTCCTGCATGACTTGACAGAGATGGGTTTATGGTCTCCTGCACTGAAGAATAAGATTCTCTATGAGAGTGACTCTGTTCAGAAGATTCAAGAAATCCCTGATGATCTAAGAGCTATTTACAAAACCGTTTGGGAGATCAAGCAAAAGACATAA

Coding sequence (CDS)

ATGGGGTTGTGCCGATGCTGCAGGTTTTCAATGATACTGCTCGATATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTGCTTTTGCTGTTTACTTGGAGCCATGGCATGCTGATGTATTTGAGGTTTTGGATCTCAGAAAGAACCATGGAAAATGGTGAATTTGTTGTTGTGAACAAGCATCTCCTGCATGACTTGACAGAGATGGGTTTATGGTCTCCTGCACTGAAGAATAAGATTCTCTATGAGAGTGACTCTGTTCAGAAGATTCAAGAAATCCCTGATGATCTAAGAGCTATTTACAAAACCGTTTGGGAGATCAAGCAAAAGACATAA

Protein sequence

MGLCRCCRFSMILLDMLIKEEARGKVLLLFTWSHGMLMYLRFWISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTVWEIKQKT
Homology
[Close]
BLAST of Lcy04g013450 vs. ExPASy Swiss-Prot
Match: Q9SJ20 (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=3702 GN=RNR1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-21
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLT+MGLW+P LKNK++ E+ S+  + EIPDDL+AIY+TV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTV 702

Query: 104 WEIKQKT 111
           WEIKQ+T
Sbjct: 703 WEIKQRT 709

[Close]
BLAST of Lcy04g013450 vs. ExPASy Swiss-Prot
Match: Q9UW15 (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I +R +  GEF VVN  LL DL EMGLWS A+KN+I+ E  S+Q IQ IP+D++A+YKTV
Sbjct: 625 IYQRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTV 684

Query: 104 WEIKQKT 111
           WEI Q+T
Sbjct: 685 WEISQRT 691

[Close]
BLAST of Lcy04g013450 vs. ExPASy Swiss-Prot
Match: P79732 (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio OX=7955 GN=rrm1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-16
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEF +VN HLL DLTE GLW+  +KN+I+ ++ S+Q I  IPDDL+ +YKTV
Sbjct: 624 IYHRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTV 683

Query: 104 WEIKQKT 111
           WEI QKT
Sbjct: 684 WEISQKT 690

[Close]
BLAST of Lcy04g013450 vs. ExPASy Swiss-Prot
Match: P07742 (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus OX=10090 GN=Rrm1 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEF +VN HLL DLTE GLW+  +KN+I+  + S+Q I EIPDDL+ +YKTV
Sbjct: 624 IYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 683

Query: 104 WEIKQKT 111
           WEI QKT
Sbjct: 684 WEISQKT 690

[Close]
BLAST of Lcy04g013450 vs. ExPASy Swiss-Prot
Match: P23921 (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens OX=9606 GN=RRM1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-15
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEF +VN HLL DLTE GLW   +KN+I+  + S+Q I EIPDDL+ +YKTV
Sbjct: 624 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 683

Query: 104 WEIKQKT 111
           WEI QKT
Sbjct: 684 WEISQKT 690

[Close]
BLAST of Lcy04g013450 vs. ExPASy TrEMBL
Match: A0A6J1HH47 (Ribonucleoside-diphosphate reductase OS=Cucurbita moschata OX=3662 GN=LOC111463501 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.5e-24
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPDDLRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDDLRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. ExPASy TrEMBL
Match: A0A6J1KVF2 (Ribonucleoside-diphosphate reductase OS=Cucurbita maxima OX=3661 GN=LOC111496788 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.2e-24
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPD+LRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDELRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. ExPASy TrEMBL
Match: A0A6J1BYB7 (Ribonucleoside-diphosphate reductase OS=Momordica charantia OX=3673 GN=LOC111005845 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMG+WSPALKNKI+YE+ SVQ IQEIPDDLRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGMWSPALKNKIIYENGSVQTIQEIPDDLRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. ExPASy TrEMBL
Match: A0A6J1D3E8 (Ribonucleoside-diphosphate reductase OS=Momordica charantia OX=3673 GN=LOC111017235 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMG+WSP+LKNKI+YE+ SVQ IQEIPDDLRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGMWSPSLKNKIIYENGSVQTIQEIPDDLRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. ExPASy TrEMBL
Match: W1PNH7 (Ribonucleoside-diphosphate reductase OS=Amborella trichopoda OX=13333 GN=AMTR_s00017p00232600 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.0e-23
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKI E+PDDL+AIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIPEVPDDLKAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQ+T
Sbjct: 703 WEIKQRT 709

[Close]
BLAST of Lcy04g013450 vs. NCBI nr
Match: KAG6595105.1 (Ribonucleoside-diphosphate reductase large subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-24
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPDDLRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDDLRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. NCBI nr
Match: KAG7027121.1 (Ribonucleoside-diphosphate reductase large subunit [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-24
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPDDLRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDDLRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. NCBI nr
Match: XP_022963223.1 (ribonucleoside-diphosphate reductase large subunit [Cucurbita moschata])

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-24
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPDDLRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDDLRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. NCBI nr
Match: XP_023518693.1 (ribonucleoside-diphosphate reductase large subunit [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPD+LRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDELRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. NCBI nr
Match: XP_023003073.1 (ribonucleoside-diphosphate reductase large subunit [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLTEMGLWSPALKNKI+YE+ SVQKIQEIPD+LRAIYKTV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYENGSVQKIQEIPDELRAIYKTV 702

Query: 104 WEIKQKT 111
           WEIKQKT
Sbjct: 703 WEIKQKT 709

[Close]
BLAST of Lcy04g013450 vs. TAIR 10
Match: AT2G21790.1 (ribonucleotide reductase 1 )

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-22
Identity = 45/67 (67.16%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 44  ISERTMENGEFVVVNKHLLHDLTEMGLWSPALKNKILYESDSVQKIQEIPDDLRAIYKTV 103
           I  R + +GEFVVVNKHLLHDLT+MGLW+P LKNK++ E+ S+  + EIPDDL+AIY+TV
Sbjct: 643 IYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTV 702

Query: 104 WEIKQKT 111
           WEIKQ+T
Sbjct: 703 WEIKQRT 709

The following BLAST results are available for this feature:
BLAST of Lcy04g013450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJ204.2e-2167.16Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=37... [more]
Q9UW151.8e-1659.70Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain AT... [more]
P797329.1e-1656.72Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio OX=7955 GN=rrm... [more]
P077429.1e-1658.21Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus OX=10090 GN=R... [more]
P239211.6e-1558.21Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens OX=9606 GN=RR... [more]
BLAST of Lcy04g013450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HH472.5e-2486.57Ribonucleoside-diphosphate reductase OS=Cucurbita moschata OX=3662 GN=LOC1114635... [more]
A0A6J1KVF27.2e-2485.07Ribonucleoside-diphosphate reductase OS=Cucurbita maxima OX=3661 GN=LOC111496788... [more]
A0A6J1BYB72.1e-2383.58Ribonucleoside-diphosphate reductase OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1D3E84.7e-2382.09Ribonucleoside-diphosphate reductase OS=Momordica charantia OX=3673 GN=LOC111017... [more]
W1PNH78.0e-2380.60Ribonucleoside-diphosphate reductase OS=Amborella trichopoda OX=13333 GN=AMTR_s0... [more]
BLAST of Lcy04g013450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595105.15.1e-2486.57Ribonucleoside-diphosphate reductase large subunit, partial [Cucurbita argyrospe... [more]
KAG7027121.15.1e-2486.57Ribonucleoside-diphosphate reductase large subunit [Cucurbita argyrosperma subsp... [more]
XP_022963223.15.1e-2486.57ribonucleoside-diphosphate reductase large subunit [Cucurbita moschata][more]
XP_023518693.11.5e-2385.07ribonucleoside-diphosphate reductase large subunit [Cucurbita pepo subsp. pepo][more]
XP_023003073.11.5e-2385.07ribonucleoside-diphosphate reductase large subunit [Cucurbita maxima][more]
BLAST of Lcy04g013450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21790.13.0e-2267.16ribonucleotide reductase 1 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000788Ribonucleotide reductase large subunit, C-terminalPFAMPF02867Ribonuc_red_lgCcoord: 45..109
e-value: 2.4E-12
score: 46.2
NoneNo IPR availableGENE3D3.20.70.20coord: 24..110
e-value: 2.6E-16
score: 61.2
NoneNo IPR availablePANTHERPTHR11573:SF26RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASEcoord: 44..110
IPR039718Ribonucleoside-diphosphate reductase large subunitPANTHERPTHR11573RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAINcoord: 44..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g013450.1Lcy04g013450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009263 deoxyribonucleotide biosynthetic process
biological_process GO:0006260 DNA replication
cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor