Lcy04g010350 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g010350
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Histone H2A
Location	Chr04: 41758803 .. 41761295 (+)
RNA-Seq Expression	Lcy04g010350
Synteny	Lcy04g010350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGTTAACCTCCCTCCCATTTTCACCTTTTTTTTTTCTGTTTGTTTCCCGAGAAAATTTTCCCTTCACCCATGGACTCCGGCGGCAAGGCCAAGAAAGGCGCCGGCGGCAGGAGAGGCGGCGGCGGTCCGAAGAAGAAGCCGGTCTCCCGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGGCCGCTACTTGAAGAAGGGCCGCTACTCTCAGCGGGTCGGAACCGGCGCTCCGGTTTACCTTGCGGCTGTGCTGGAGTACCTTGCTGCTGAGGTGAATTTCTACTATGTCTCGTCAGTTTTCACTTTCGATCACTTAATTTAGGGTTTTTTTTTAGCTTCTGTTAGAGGATTTTACGTCTTGAATGTCTGTGCGAAACCGGATCCTTTGAGTAACAGTCTCTGACTTTTGGTGGTTTTCTTGATGGATTGGATGCTTGGATTGTAAGTGCATTTTTCTTTTTGTTTGATTTTCTTGCTTTTTTCTTTTTCTTTTTTCTTTTTTTGGAGATGAAATCCCCAATTTGCAGGAATTATGTGTTAAGTGTTTTTTCATCCTATTTTAATCTATTCTATGATTTCACCTTGTGTAATAATTTGTATATAAAGACAAGTCCCTTCTAAGTTTTAAGACAATTTAGAATGGAAAATATTAAAAAAAAAAAAAAAGAAAGAAAGAGAGACTTTTTGATGATGATTTTGTTTTTTGGTTTTCTATTTTTAAAATTTTAAATTCATATATGGATGTTTTCTTTGTTTAGTTTTCAAAGAGATTTTTGTTCCTTTTTTAAAGAAATTTTACTGTGATTTGGAAAACGATTTTGAAAGTATGGCTAGAAAACAAAGGAAAATTTTAGTAAATAACTATAAATTTTATAAGGAGGAAACTTGAAATAAAAACTTTATCAAAAAGGGTATTTTAGGGTGCGTTTGGATGGTGATCCAAAAACATAAATTTGGAAACAAGGAATTTGATGAAAAATAGAGTTGTATTTCACGTTTGTTTTAATATTTGTTTGGTGGAAGATTTAGAGTTTGAAAACACTAAAAACATACCGATGTTGTTAATTAAATGTTAAGTACTCGATAAATGTTACCGAATTCATTTGATTGAGTGAATCTGAAAACAAGAAATTCAATCGGGATAGATACCCAACCGCCTTCGGTATCCGCTTTGGTTGCTTTTATATCTCTTTCAGCTGTCCTTTAGGTCCTGATTCCGATGCTTTATCCAAACTACTTTTTATTGCTCAAAGAAAAGGGCCAATGTAGTATTTATTTAGCAAGATGTGTTAATTTTGGCTTCAAAGAAAATAGCTGCTTTTTAGTAACAGTTATGGGTAGTGTTGATTCTTTATCCCTTTGGTTTTAAAGGTTTCATATTCTATTGCAATTTCTCTTCTTCTTTTTTTTTCACCTATAGATCTTTGTTTTTAACAGAAAACATATATCACCTTCTAAATTCATTCTGAAATTTAACTTTTAATTTCTCTATTTCTTGTCCAAGAGAAACCTTGATCATCCAGTGAAGTTTAGTAGAAGTTTTTTTATCCCCTGATGGAATCTTACATATCTACACAGATTTAGGAGTTTGATTATAGTTCAAGAAGTGATATTGTATACTGTCTAATTAGCTGCCAACTAGTTAAGGCATATACCCTTGACTAAGAGGTTAGAGGTTCAAAATACTCCACTCCGACATGTTGTTTAGTTTAAAAAAAGTGTGGTAGGGATTTAATATGGTATTAGATGTGAAGATCATAAGTTCAAAACTTCAAATACTCATTATATCATTTCCTTTCCAATTAATATTGATAATTACTTGTTATGTCTTGTGCCTATTCTCAAGCCTGAGTGAAAGGAAGTATTAAGAATATCGATAAGAGATTAAATATACCGTAACCTATCAGTTCAAGACTGAGTTTAGGGCTGAATTATGCTTTAGGTTTTGGAACTGGCTGGAAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTGTTGGCCGTGAGGAACGACGAGGAACTTGGAAAGCTTCTTGCTGGTGTGACGATCGCTCACGGTGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCTGAGAAGGCGGCAGCAGCAAAGGAGTCCAAGTCCCCCTCCAAAGGCACTAAGTCCCCTAAGAAGGCCTAACTTCTCATATGCCCCACCTACTTCATTCTGTACTTAATTTCTTAGCTGTACTTAGATTGGACTCATCTTCATGTTTAGGACCACTTTATTTCTGTTTGTGCCTTTATATTGTAGGACAGTCCTCTGTTTTCACAACTCAGTTGAAATGATGTAAGATTTAACCTCTTCTGAATCTTCCCAATGGGGTAGTGTATGTTAAGAGGATTTGTTTTCTATTTGAACTTTCTGACACATTGAAATGGCTTCAATGTATGGATTAAATTAGACCACCAAATTATGTGATTTACTCTTG

mRNA sequence

GTCGTTAACCTCCCTCCCATTTTCACCTTTTTTTTTTCTGTTTGTTTCCCGAGAAAATTTTCCCTTCACCCATGGACTCCGGCGGCAAGGCCAAGAAAGGCGCCGGCGGCAGGAGAGGCGGCGGCGGTCCGAAGAAGAAGCCGGTCTCCCGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGGCCGCTACTTGAAGAAGGGCCGCTACTCTCAGCGGGTCGGAACCGGCGCTCCGGTTTACCTTGCGGCTGTGCTGGAGTACCTTGCTGCTGAGGTTTTGGAACTGGCTGGAAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTGTTGGCCGTGAGGAACGACGAGGAACTTGGAAAGCTTCTTGCTGGTGTGACGATCGCTCACGGTGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCTGAGAAGGCGGCAGCAGCAAAGGAGTCCAAGTCCCCCTCCAAAGGCACTAAGTCCCCTAAGAAGGCCTAACTTCTCATATGCCCCACCTACTTCATTCTGTACTTAATTTCTTAGCTGTACTTAGATTGGACTCATCTTCATGTTTAGGACCACTTTATTTCTGTTTGTGCCTTTATATTGTAGGACAGTCCTCTGTTTTCACAACTCAGTTGAAATGATGTAAGATTTAACCTCTTCTGAATCTTCCCAATGGGGTAGTGTATGTTAAGAGGATTTGTTTTCTATTTGAACTTTCTGACACATTGAAATGGCTTCAATGTATGGATTAAATTAGACCACCAAATTATGTGATTTACTCTTG

Coding sequence (CDS)

ATGGACTCCGGCGGCAAGGCCAAGAAAGGCGCCGGCGGCAGGAGAGGCGGCGGCGGTCCGAAGAAGAAGCCGGTCTCCCGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGGCCGCTACTTGAAGAAGGGCCGCTACTCTCAGCGGGTCGGAACCGGCGCTCCGGTTTACCTTGCGGCTGTGCTGGAGTACCTTGCTGCTGAGGTTTTGGAACTGGCTGGAAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTGTTGGCCGTGAGGAACGACGAGGAACTTGGAAAGCTTCTTGCTGGTGTGACGATCGCTCACGGTGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCTGAGAAGGCGGCAGCAGCAAAGGAGTCCAAGTCCCCCTCCAAAGGCACTAAGTCCCCTAAGAAGGCCTAA

Protein sequence

MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAAAAKESKSPSKGTKSPKKA

Homology

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BLAST of Lcy04g010350 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSG K KKGA GRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAA-AKESKSPSKGTKSPKKA 153
           INP+LLPKKSEKAA+  K  KSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Lcy04g010350 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MD+G K KKGAG R+ GGGPKKKPVSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAPVY
Sbjct: 1   MDTGAKLKKGAGERK-GGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAA--KESKSPSKGTKSPKKA 153
           INPVLLPKK+EKAAAA  KE KSP+K TKSPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of Lcy04g010350 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 136/160 (85.00%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MDSGGKA--KKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAP 60
           M+ G K   K GAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSEKAAA--AKESKSPSK----GTKSPKKA 153
           PNINPVLLPKK+  AAA  AKE K+P       TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of Lcy04g010350 vs. ExPASy Swiss-Prot
Match: Q6L500 (Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 136/160 (85.00%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MDSGGKA--KKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAP 60
           M+ G K   K GAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSEKAAA--AKESKSPSK----GTKSPKKA 153
           PNINPVLLPKK+  AAA  AKE K+P       TKSPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of Lcy04g010350 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 131/152 (86.18%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MD+  K KKGAGGR+  GGP+KK V+RS +AGLQFPVGRIGRYLKKGRY+QRVGTGAPVY
Sbjct: 1   MDASTKTKKGAGGRK--GGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INP+LLPKK+EKAA    +KSPSK TKSPKKA
Sbjct: 121 INPILLPKKNEKAATT--TKSPSKATKSPKKA 148

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BLAST of Lcy04g010350 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKGA GRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+AAA KE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

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BLAST of Lcy04g010350 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 144/152 (94.74%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG  GRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+AAAAKE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of Lcy04g010350 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 145/153 (94.77%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG  GRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA-AAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+A  AAKE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Lcy04g010350 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 145/153 (94.77%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG  GRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA-AAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+A  AAKE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Lcy04g010350 vs. ExPASy TrEMBL
Match: A0A2C9W0G8 (Histone H2A OS=Manihot esculenta OX=3983 GN=MANES_04G031600 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M+SGGK KKGAGGR+ GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY
Sbjct: 1   MESGGKVKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSEK  AAKE KSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSEK--AAKEPKSPSKATKSPKKA 149

[Close]

BLAST of Lcy04g010350 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 3.6e-68
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKGA GRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+AAA KE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

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BLAST of Lcy04g010350 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 144/152 (94.74%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG  GRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+AAAAKE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of Lcy04g010350 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 145/153 (94.77%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG  GRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA-AAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSE+A  AAKE KSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of Lcy04g010350 vs. NCBI nr
Match: XP_021887623.1 (histone H2A [Carica papaya])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDS  K KKGAGGR+ GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY
Sbjct: 1   MDSATKVKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSEKAAA KESKSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSEKAAATKESKSPSKATKSPKKA 151

[Close]

BLAST of Lcy04g010350 vs. NCBI nr
Match: XP_021609460.1 (histone H2A [Manihot esculenta] >OAY51774.1 hypothetical protein MANES_04G031600v8 [Manihot esculenta])

HSP 1 Score: 261.2 bits (666), Expect = 5.7e-66
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M+SGGK KKGAGGR+ GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY
Sbjct: 1   MESGGKVKKGAGGRK-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKESKSPSKGTKSPKKA 153
           INPVLLPKKSEK  AAKE KSPSK TKSPKKA
Sbjct: 121 INPVLLPKKSEK--AAKEPKSPSKATKSPKKA 149

[Close]

BLAST of Lcy04g010350 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-67
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSG K KKGA GRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAA-AKESKSPSKGTKSPKKA 153
           INP+LLPKKSEKAA+  K  KSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Lcy04g010350 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-63
Identity = 137/177 (77.40%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSG K KKGA GRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAAA-AKESKSPSKGTKSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA+  K  KSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Lcy04g010350 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-54
Identity = 118/153 (77.12%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 1   MDSGGKAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M+S GK KK  GGR+  G PK K VS+S+KAGLQFPVGRI R+LKKGRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKS-EKAAAAKESKSPSKGTKSPKKA 153
           IN VLLPKKS  K A  K +KSP    KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---VKSPKKA 150

[Close]

BLAST of Lcy04g010350 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-51
Identity = 112/147 (76.19%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 6   KAKKGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVL 65
           K  +GAGGR+  GG +KK VS+SVKAGLQFPVGRI RYLKKGRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRK--GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSEKAAAAKESKSPSKGTKSPKKA 153
           LPKKS  +++  E  S    TKSPKKA
Sbjct: 129 LPKKSTASSSQAEKAS---ATKSPKKA 150

[Close]

BLAST of Lcy04g010350 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 13  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEV 72
           G++ G G  KK  SRS KAGLQFPVGRI R+LK G+Y++RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEK 132
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+  
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS 124

Query: 133 AAAAKE 139
           +   +E
Sbjct: 125 SKPTEE 130

The following BLAST results are available for this feature:

BLAST of Lcy04g010350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	3.5e-66	89.54	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	4.6e-66	90.26	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
A2Y5G8	1.1e-62	85.00	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]
Q6L500	1.1e-62	85.00	Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 ...	[more]
Q2HU68	1.4e-62	86.18	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]

BLAST of Lcy04g010350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR43	1.7e-68	96.05	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A0A0KXF2	8.6e-68	94.74	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A5A7U1I6	1.1e-67	94.77	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	1.1e-67	94.77	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A2C9W0G8	2.8e-66	94.74	Histone H2A OS=Manihot esculenta OX=3983 GN=MANES_04G031600 PE=3 SV=1	[more]

BLAST of Lcy04g010350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143711.1	3.6e-68	96.05	histone H2A [Momordica charantia]	[more]
XP_004142082.1	1.8e-67	94.74	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_008447608.1	2.3e-67	94.77	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_021887623.1	3.4e-66	94.08	histone H2A [Carica papaya]	[more]
XP_021609460.1	5.7e-66	94.74	histone H2A [Manihot esculenta] >OAY51774.1 hypothetical protein MANES_04G031600...	[more]

BLAST of Lcy04g010350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	2.5e-67	89.54	histone H2A 12	[more]
AT5G02560.2	2.8e-63	77.40	histone H2A 12	[more]
AT5G59870.1	2.4e-54	77.12	histone H2A 6	[more]
AT5G27670.1	1.5e-51	76.19	histone H2A 7	[more]
AT4G27230.1	1.1e-43	71.43	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 81..95 score: 73.78 coord: 109..127 score: 75.79 coord: 52..67 score: 86.43 coord: 67..80 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 2.4E-79 score: 279.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 25..127 e-value: 7.83246E-66 score: 194.091
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..134 e-value: 6.3E-19 score: 67.4
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..98 e-value: 1.5E-12 score: 48.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 9..140 e-value: 1.6E-63 score: 214.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 7..147
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g010350.1	Lcy04g010350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity