Lcy04g002400 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002400
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 16942895 .. 16943242 (-)
RNA-Seq ExpressionLcy04g002400
SyntenyLcy04g002400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTGCAACGTCGTTCTTTCCTTTTCATCTCCTTTCTCCTCCTTACCATGTGCTTTCCTTTCACACTCACGGAAACTTCTAGAGTCATCCTCGCTTTAGTACCCAACCGAAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAGTGAATTATCATCTCAACAGGTAACTAACGAGGCTCCAAGTTCTAATGATTTCAACATTATAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATATGCTAA

mRNA sequence

ATGACTTTGCAACGTCGTTCTTTCCTTTTCATCTCCTTTCTCCTCCTTACCATGTGCTTTCCTTTCACACTCACGGAAACTTCTAGAGTCATCCTCGCTTTAGTACCCAACCGAAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAGTGAATTATCATCTCAACAGGTAACTAACGAGGCTCCAAGTTCTAATGATTTCAACATTATAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATATGCTAA

Coding sequence (CDS)

ATGACTTTGCAACGTCGTTCTTTCCTTTTCATCTCCTTTCTCCTCCTTACCATGTGCTTTCCTTTCACACTCACGGAAACTTCTAGAGTCATCCTCGCTTTAGTACCCAACCGAAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAGTGAATTATCATCTCAACAGGTAACTAACGAGGCTCCAAGTTCTAATGATTTCAACATTATAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATATGCTAA

Protein sequence

MTLQRRSFLFISFLLLTMCFPFTLTETSRVILALVPNRKVLKATTPANATPFSELSSQQVTNEAPSSNDFNIIKVSEIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNNNVPIC
Homology
[Close]
BLAST of Lcy04g002400 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 0 

Query: 1   MTLQRRSFLFI-SFLLLTMCFPFTLTETSRVILALVPNRKVLKATTPANATPFSELSSQQ 60
           MT +   FLFI  F L  M  P TL  TSR IL L P       T   +A  F + SS+ 
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPSSNDFNIIKVS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           + T   P+S   N +K+S    E  ST     HS + SCKPKGPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

[Close]
BLAST of Lcy04g002400 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-07
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 11  ISFLLLTMCFPFTLTETSRVILALVPNRKVLKATTPANATPFSELSSQQVTNEAPSSNDF 70
           I FLL+ +  P T+  TSR +LAL                   E   Q   ++ P+SNDF
Sbjct: 12  IFFLLIVISSPSTIIATSRHMLAL----------------DTKESPPQPPMDKPPTSNDF 71

Query: 71  NIIKVSEIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNNNVPIC 116
           + + +       P +  SA+ SCKPKGP+RWS+P+PI  NN+PIC
Sbjct: 72  DTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPI-RNNLPIC 99

[Close]
BLAST of Lcy04g002400 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 0 

Query: 1   MTLQRRSFLFI-SFLLLTMCFPFTLTETSRVILALVPNRKVLKATTPANATPFSELSSQQ 60
           MT +   FLFI  F L  M  P TL  TSR IL L P       T   +A  F + SS+ 
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPSSNDFNIIKVS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           + T   P+S   N +K+S    E  ST     HS + SCKPKGPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

The following BLAST results are available for this feature:
BLAST of Lcy04g002400 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F61.6e-0543.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1[more]
BLAST of Lcy04g002400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595583.14.6e-0738.10hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54792.13.3e-0543.10hypothetical protein Csa_012277 [Cucumis sativus][more]
BLAST of Lcy04g002400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002400.1Lcy04g002400.1mRNA