Lcy04g000850 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g000850
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr04: 3415676 .. 3417913 (+)
RNA-Seq ExpressionLcy04g000850
SyntenyLcy04g000850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCCAGGTTTTGGTGGGGTTCTATGGAAGGTAAAAAGAAAATTCACTGGAAGAAATGAGAATTTTTATGTTCCCCAAAGGAAGCAGGTGGATTGAATTTTCGTGATCTGGTGAATTTTAATAAAGCCTTGTTGGCAAAACAGGTTTGACGCTTATTCACAAACCCAAATCTTATGGTATCTAGAGTTATTTGTGGTAGGTATGCTTATGGTACAACATTACTCTCAACTCCAATTAAAGCTAATTGTTCATTTTTCTGGCGAAGTTGTGTTTGGGCTCGTGATTTACTTTCCAAGGGATTGCGTAAACAGGTAGGAAACGGAATGAGTATCCACTTCAACAATGATCCATGGATCCCAAAAGAAACCTCTTTAAAGCCAGTTCTTAAGGTGGCATCACAGGATTTTGAGGGTAGGATGGTATCGAACTTTATTACTCCTTCCAAGGCGTGGGATCTAATCAAGTTCAGAGAATATGTATGGGATGAGGATGTGCGGTTAATCTCAACTATTCATATTAGTACGGTAAATGACGAAGATAAAGGGATTTGACATTATTCTAACAATGGCGTTTATTCTGTTAAAAATGGATATAAGTTGGCCATGTTGTCTGCTGCGACTTGCGGTGAGTCAAGCATGAATATTCAAAAGAGTTGGTGGATGGTGCTATGGAAATCACAGCTGTCGTCTAAGGTTAAGCTGTTTATATGGAAAGCCTATCATGGTTGTTTACCGACAAATTACTGCCTGTGGAAAAGGAAGATCGAAATTTCGTCTATGTGCCATATGTGCGAAAAGAAGGTTGAGACAATCGATCATGCTTTATGTGGGTGTAAACGAGCCAAAGCAAGTTGTGATTGTATTTTCTCTCGGATTGATGGTAATATTGTGGTAAACAATAATTTTTCTGACCGTATTGTTTTCTTAGTAGGAAATCTGAGTGTGAACGAATTTGAAAAGGCGTGTATAGCGTTCTGGTCCATATGGAATAATCATAATGATTTTCGAGAGGGAAAGCCTATTGCCGATTGGCATCACCAATGTGAATGAATCATCAAATATTGGGAAGAGACCACTCAAAGACTGAAGGAGGCAGATGTTGTGACACTACTCCCAGATGTTCAACCAAATTCATAGTCTGATTGTGTTAAGGTATATACTGATGCAGCAATGTCTCCTACTTGTGATGGGGCAGGGTATGGTGCTCTTATTGTTGATAACGAGGATAACCTATGTGGAGCCATGGAGATGGTCGATAACGCAGCACTAAACCCCCTAGTTGTGGAGGTTCAAGCTATTTTACATGCTCTTCGATTGTTACGACAAATGGATATCTGAGAAGCTCAAGTATACTCAGATTCTTACAATACTATCAACATGATTAATAAGGTGTTAGATGTGTCGACTGATGTGGCTCATTGGATCATTAGCATACAGGATATGTGCAAAAGTTTTCAGTCTATTTCGTTTCATCATATTTCTAGGAATAGAAATTTTCGAGCGGATATTTTAGCTAAAAAGGCTTTAGCATGCAAGAGTACCATGTTGTGGCTATCAAATTTCCCACCATGGTTAGTGGCTTGGGCAATGCTGCCCATTGTTAATGTATTGATACTTGTGTTTGTTTGAATTAATGAAATCGTTTCCATTTCAGAAAAGAAGAAGAAAAAAAAAAAACTTCTAAAGGTTTGAGCAATCAAACAACTCCAACCATTTAAGAGGATTTAAATTAAAAATTCTAATCTAGAATGTTTTGGAGTTTTGAGCAACCAAAGAGACCCAAACCATGTAAGGGCTCATTCCGAATACTTTTTAGTTGGAGTGTTTTTTAGGAATCTTTTTTTTTTTTTTAAATAAAAATTGTCTATAATTTAAACACTCATATGTTCGGTTATATTTTTTAAAAAATGATTTTATACATAAATTTAATTTTTTTTGGTTTACTTCACATTCAAAATGCTTACACGGATGTCAAATTACTATGAAGGATGATTATTAAATATTATGAACTAGATACTAATAAATTCAAATTTGTATTTAAAATACTGACACTAGGAAAGGATCGTCAGAGTCGTCAGAGTGGTAGTCGGTGGTCGTCGGGAGATGGCAATGGCGGTGGTCATTAGAGGATGTTTGGTGGTGGCGGTGGTTGTTAAAGTGTCGTTGGTTGTGGCGGTGGTTGACGAAGTTTTGAGAGCGATGGTCGTTGAAATTATCGCTAGTGGTGAGTGGTAG

mRNA sequence

ATGATGGCCAGGTATGCTTATGGTACAACATTACTCTCAACTCCAATTAAAGCTAATTGTTCATTTTTCTGGCGAAGTTGTGTTTGGGCTCGTGATTTACTTTCCAAGGGATTGCGTAAACAGGTAGGAAACGGAATGAGTATCCACTTCAACAATGATCCATGGATCCCAAAAGAAACCTCTTTAAAGCCAGTTCTTAAGGTGGCATCACAGGATTTTGAGGGTAGGATGGTATCGAACTTTATTACTCCTTCCAAGGCGTGGGATCTAATCAAGTTCAGAGAATATGTATGGGATGAGGATGTGCGGTTAATCTCAACTATTCATATTAGTACGGTATATACTGATGCAGCAATGTCTCCTACTTGTGATGGGGCAGGGTATGGTGCTCTTATTGTTGATAACGAGGATAACCTATGTGGAGCCATGGAGATGGTCGATAACGCAGCACTAAACCCCCTAGTTGTGGAGGAAAGGATCGTCAGAGTCGTCAGAGTGGTAGTCGGTGGTCGTCGGGAGATGGCAATGGCGGTGGTCATTAGAGGATGTTTGGTGGTGGCGGTGGTTGTTAAAGTGTCGTTGGTTGTGGCGGTGGTTGACGAAGTTTTGAGAGCGATGGTCGTTGAAATTATCGCTAGTGGTGAGTGGTAG

Coding sequence (CDS)

ATGATGGCCAGGTATGCTTATGGTACAACATTACTCTCAACTCCAATTAAAGCTAATTGTTCATTTTTCTGGCGAAGTTGTGTTTGGGCTCGTGATTTACTTTCCAAGGGATTGCGTAAACAGGTAGGAAACGGAATGAGTATCCACTTCAACAATGATCCATGGATCCCAAAAGAAACCTCTTTAAAGCCAGTTCTTAAGGTGGCATCACAGGATTTTGAGGGTAGGATGGTATCGAACTTTATTACTCCTTCCAAGGCGTGGGATCTAATCAAGTTCAGAGAATATGTATGGGATGAGGATGTGCGGTTAATCTCAACTATTCATATTAGTACGGTATATACTGATGCAGCAATGTCTCCTACTTGTGATGGGGCAGGGTATGGTGCTCTTATTGTTGATAACGAGGATAACCTATGTGGAGCCATGGAGATGGTCGATAACGCAGCACTAAACCCCCTAGTTGTGGAGGAAAGGATCGTCAGAGTCGTCAGAGTGGTAGTCGGTGGTCGTCGGGAGATGGCAATGGCGGTGGTCATTAGAGGATGTTTGGTGGTGGCGGTGGTTGTTAAAGTGTCGTTGGTTGTGGCGGTGGTTGACGAAGTTTTGAGAGCGATGGTCGTTGAAATTATCGCTAGTGGTGAGTGGTAG

Protein sequence

MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKETSLKPVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHISTVYTDAAMSPTCDGAGYGALIVDNEDNLCGAMEMVDNAALNPLVVEERIVRVVRVVVGGRREMAMAVVIRGCLVVAVVVKVSLVVAVVDEVLRAMVVEIIASGEW
Homology
BLAST of Lcy04g000850 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 21/65 (32.31%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + +RY   ++++   +    S+ WRS +  R+LLS+GL + +G+G+      D WI  ET
Sbjct: 89  LRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDET 148

Query: 61  SLKPV 66
            L P+
Sbjct: 149 PLPPL 153

BLAST of Lcy04g000850 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 4    RYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKETSLK 63
            +Y   T+LL     +  S+FW+  +W RDLL KGLR +VGNG +I   +DPW+P+ T+ K
Sbjct: 981  KYFKDTSLLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFK 1040

Query: 64   PVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHIST 113
            P+    +       V++FIT    WD+        +ED  LI ++ IS+
Sbjct: 1041 PLR--FNNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISS 1087

BLAST of Lcy04g000850 vs. ExPASy TrEMBL
Match: A0A803NTN0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 4   RYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKETSLK 63
           RY    + L   I  + S+ W+S  W RDLL KG+R +VGNG +I    DPWIP  T+ K
Sbjct: 601 RYFSNNSFLDAHIGHSPSYTWQSICWGRDLLVKGVRFKVGNGTNIACAIDPWIPSHTNFK 660

Query: 64  PVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHIS 112
           P   V+ Q      VS FIT  + W++     Y    DV  I TI +S
Sbjct: 661 P---VSFQGSSSLSVSTFITDQREWNIDLLNSYFQPIDVEKILTIPLS 705

BLAST of Lcy04g000850 vs. ExPASy TrEMBL
Match: A0A6J1BRN0 (uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004787 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + A+Y + + +L      N S+FW+  +W RDLL KGLR +VGNG +I+  +DPWIP+  
Sbjct: 110 LKAKYFHDSLVLQATHLRNQSYFWKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPY 169

Query: 61  SLKPVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHIS 112
           S +P+   A        V++ I P+  WD+        +ED  LI ++ +S
Sbjct: 170 SFRPI--TAPFGPYDVKVADLINPNGQWDVHLISYIFCEEDRDLILSMPVS 218

BLAST of Lcy04g000850 vs. ExPASy TrEMBL
Match: A0A6D2HV94 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS5103 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-11
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + +RY   T+ L + + +  SF WRS +W RDLL KGLRK+VGN  ++    DPWI  + 
Sbjct: 42  LKSRYFLATSFLDSVVGSRPSFAWRSIMWGRDLLVKGLRKRVGNRNTVRVWTDPWI-LDG 101

Query: 61  SLKPVLKVASQDFEGRMVSNFITP-SKAWDLIKFREYVWDEDVR 104
            L+   ++ +      M  + I P SK WD+ K RE  ++EDV+
Sbjct: 102 ELRAPWRLINPFVVNLMAKDLIDPVSKRWDMAKVREMFFEEDVQ 144

BLAST of Lcy04g000850 vs. ExPASy TrEMBL
Match: A0A803NF83 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-11
Identity = 43/113 (38.05%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 4   RYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKETSLK 63
           RY   T+ L   I  + S+ W+S  W R+LL KGLR +VGNG ++    DPWIP +T+ K
Sbjct: 211 RYFSATSFLYANIGHSPSYTWQSICWGRELLIKGLRFKVGNGFNVAAGFDPWIPGQTNFK 270

Query: 64  PVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHISTVYTD 117
           PV           MVS+ IT ++ W+L    ++    DV  I TI +S    D
Sbjct: 271 PVSFCGPSSM---MVSSLITDNREWNLELLNDWFLPIDVDKILTIPLSFFAAD 320

BLAST of Lcy04g000850 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-11
Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 4    RYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKETSLK 63
            +Y   T+LL     +  S+FW+  +W RDLL KGLR +VGNG +I   +DPW+P+ T+ K
Sbjct: 981  KYFKDTSLLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFK 1040

Query: 64   PVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHIST 113
            P+    +       V++FIT    WD+        +ED  LI ++ IS+
Sbjct: 1041 PLR--FNNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISS 1087

BLAST of Lcy04g000850 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-11
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + A+Y + + +L      N S+FW+  +W RDLL KGLR +VGNG +I+  +DPWIP+  
Sbjct: 110 LKAKYFHDSLVLQATHLRNQSYFWKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPY 169

Query: 61  SLKPVLKVASQDFEGRMVSNFITPSKAWDLIKFREYVWDEDVRLISTIHIS 112
           S +P+   A        V++ I P+  WD+        +ED  LI ++ +S
Sbjct: 170 SFRPI--TAPFGPYDVKVADLINPNGQWDVHLISYIFCEEDRDLILSMPVS 218

BLAST of Lcy04g000850 vs. NCBI nr
Match: CAA7017868.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-11
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + +RY   T+ L + + +  SF WRS +W RDLL KGLRK+VGN  ++    DPWI  + 
Sbjct: 42  LKSRYFLATSFLDSVVGSRPSFAWRSIMWGRDLLVKGLRKRVGNRNTVRVWTDPWI-LDG 101

Query: 61  SLKPVLKVASQDFEGRMVSNFITP-SKAWDLIKFREYVWDEDVR 104
            L+   ++ +      M  + I P SK WD+ K RE  ++EDV+
Sbjct: 102 ELRAPWRLINPFVVNLMAKDLIDPVSKRWDMAKVREMFFEEDVQ 144

BLAST of Lcy04g000850 vs. NCBI nr
Match: CAA7055450.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-10
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + +RY   T+ L + I +  S+ WRS +W R+LL KGLRK+VGNG ++    DPWI  E 
Sbjct: 512 LKSRYFSSTSFLESIIGSRPSYAWRSIIWGRELLVKGLRKRVGNGNTLRVWFDPWIVDE- 571

Query: 61  SLKPVLKVASQDFEGRMVSNFITP-SKAWDLIKFREYVWDEDVRLI 106
            L+ + ++ +      +  + I P SK WDL K  +  ++ED+R +
Sbjct: 572 GLRALWRLTNPFQVNLLAKDLIDPYSKRWDLAKLGDIFFEEDMRRV 616

BLAST of Lcy04g000850 vs. NCBI nr
Match: XP_018462059.1 (PREDICTED: uncharacterized protein LOC108833114 [Raphanus sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.9e-10
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + ARY    ++L+  +K   S+ W+S ++ RDLL KGLR  +GNG S+    DPW+P   
Sbjct: 712 LQARYFPDGSILNASLKKKASYAWKSLLFGRDLLKKGLRFIIGNGSSVSMWADPWLPTHP 771

Query: 61  SLKPVLKVASQDFEGRMVSNFI-TPSKAWDLIKFREYVWDEDVRLISTIHIST 113
              P     ++  E   V N+I      W+L K R  V DEDV +I  + IS+
Sbjct: 772 PRAPRAIANAEALES--VRNYIQADGTGWNLDKLRGKVVDEDVEIILRLKISS 822

BLAST of Lcy04g000850 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-05
Identity = 21/65 (32.31%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 1   MMARYAYGTTLLSTPIKANCSFFWRSCVWARDLLSKGLRKQVGNGMSIHFNNDPWIPKET 60
           + +RY   ++++   +    S+ WRS +  R+LLS+GL + +G+G+      D WI  ET
Sbjct: 89  LRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWIMDET 148

Query: 61  SLKPV 66
            L P+
Sbjct: 149 PLPPL 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932951.4e-0432.31Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J1DX301.2e-1136.70uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803NTN01.2e-1139.81Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1BRN02.1e-1135.14uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6D2HV942.8e-1138.46Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS5103 P... [more]
A0A803NF832.8e-1138.05Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022158377.12.6e-1136.70uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022131662.14.4e-1135.14uncharacterized protein LOC111004787 [Momordica charantia][more]
CAA7017868.15.7e-1138.46unnamed protein product [Microthlaspi erraticum][more]
CAA7055450.11.7e-1036.79unnamed protein product [Microthlaspi erraticum][more]
XP_018462059.14.9e-1036.28PREDICTED: uncharacterized protein LOC108833114 [Raphanus sativus][more]
Match NameE-valueIdentityDescription
ATMG00310.11.0e-0532.31RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g000850.1Lcy04g000850.1mRNA