Lcy03g020210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g020210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ribonuclease J isoform X1
Location	Chr03: 53618956 .. 53619937 (+)
RNA-Seq Expression	Lcy03g020210
Synteny	Lcy03g020210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGAGATTACAAACGAAGGTGAAGAAGATAGTGATGACGAGTCACTGAAAACATCAAATTCTGATGCGAAGCCTTCGAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGTGGGGAATTGCATGTCAGGTTTCAAGTTTCCAAGGGACGAATGGCATTATGGGAAGAGATATCCACAAGTATGTTGGCCGATGGAATAAATCGGAGTCCAGGACAGTGCAAATCTCTGTGGGCGTCTCTGGTTCAGAAATTTGAGGTCCGTTTTCTGTTTCTACTTTTAATCTTGAGCTCTGCTCTGCCTTTTTGAGTTACCATAGCAATGAAATTTTTTTCCATCATTACTTTCTCCTTCAATTGATGTTATAGATGCAAACTTAGAGTCTCATTCTGTTTAATTCCCTCTCTGCCGTACTTCAATGGAGGATTTTTTTTTTTTTTTTTTGAAATAACTTCAATGGAGGATTTAGTTTCTCATCTATCAGGCCGAGAGTCCTCTAAAGAATTAAAAATATTTACAGGGTTGTTATAACTTGAGCAAAAAAAAACTATACAGATTTGGAATGACTTTTTTAGTGCTTATAAAAGACTTCTTTTTCTTTAAGTAAACACTTAGGAAAGTCATTCCAAACAGGTTCTATATATTGAGGTGATTCATATTGTCTCCTGCATAAGCTTTTTCAATTCCACGTCATATGTCTAGGCGTCAACATGCCTTAGTAAGAGACAATCTGTAGAGTTCCTTTTCTTCAGATGCTCCTTGCCTAGCTCAATTCATGATGGACCAATAAATTCTGCAGTTATTCTTGCTAGAGAAAATGTATTAATAAATCTGATAATCTACATTCTTTGTACAGCAGGAAAGCAAAAGTGAAAAGAAAAGCAAGAAGAGTTGGCCATACTTCGAGGAAATGAGTGGCATATTGTCTGGTTCAGAGGCAGTAGCAGCAAAATGA

mRNA sequence

ATGTCGGAGATTACAAACGAAGGTGAAGAAGATAGTGATGACGAGTCACTGAAAACATCAAATTCTGATGCGAAGCCTTCGAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGTGGGGAATTGCATGTCAGGTTTCAAGTTTCCAAGGGACGAATGGCATTATGGGAAGAGATATCCACAAGTATGTTGGCCGATGGAATAAATCGGAGTCCAGGACAGTGCAAATCTCTGTGGGCGTCTCTGGTTCAGAAATTTGAGCAGGAAAGCAAAAGTGAAAAGAAAAGCAAGAAGAGTTGGCCATACTTCGAGGAAATGAGTGGCATATTGTCTGGTTCAGAGGCAGTAGCAGCAAAATGA

Coding sequence (CDS)

ATGTCGGAGATTACAAACGAAGGTGAAGAAGATAGTGATGACGAGTCACTGAAAACATCAAATTCTGATGCGAAGCCTTCGAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGTGGGGAATTGCATGTCAGGTTTCAAGTTTCCAAGGGACGAATGGCATTATGGGAAGAGATATCCACAAGTATGTTGGCCGATGGAATAAATCGGAGTCCAGGACAGTGCAAATCTCTGTGGGCGTCTCTGGTTCAGAAATTTGAGCAGGAAAGCAAAAGTGAAAAGAAAAGCAAGAAGAGTTGGCCATACTTCGAGGAAATGAGTGGCATATTGTCTGGTTCAGAGGCAGTAGCAGCAAAATGA

Protein sequence

MSEITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSEAVAAK

Homology

[Close]

BLAST of Lcy03g020210 vs. ExPASy Swiss-Prot
Match: Q84W56 (Ribonuclease J OS=Arabidopsis thaliana OX=3702 GN=RNJ PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-34
Identity = 78/116 (67.24%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 7   EGEEDS--DDESLKTSNSDAKPS-KPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMAL 66
           EG+E+S  DDE    S+S+ K S K V++NKWKPEEIKK+I++RGELH RFQV KGRMAL
Sbjct: 790 EGKENSRDDDELADASDSETKSSPKRVRKNKWKPEEIKKVIRMRGELHSRFQVVKGRMAL 849

Query: 67  WEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILS 120
           WEEIS+++ A+GINRSPGQCKSLWASL+QK+E ESK++++SK SWP+FE+M+ ILS
Sbjct: 850 WEEISSNLSAEGINRSPGQCKSLWASLIQKYE-ESKADERSKTSWPHFEDMNNILS 904

[Close]

BLAST of Lcy03g020210 vs. ExPASy Swiss-Prot
Match: O80450 (Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 34  KWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGINRSPGQCKSLWASLVQK 93
           +W  EE K+LI +RGEL   F  +K    LWE IS  M      RSP QCK  W +LV +
Sbjct: 41  QWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTR 100

Query: 94  FEQ-ESKSEKKSKKSWPYFEEMSGILS 120
           F+  E+   + +++ +P++++M  I +
Sbjct: 101 FKGCETMEAETARQQFPFYDDMQNIFT 127

[Close]

BLAST of Lcy03g020210 vs. ExPASy Swiss-Prot
Match: Q39117 (Trihelix transcription factor GT-2 OS=Arabidopsis thaliana OX=3702 GN=GT-2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 14  DESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLA 73
           D ++K  N D   S     ++W   E++ LI++R  L   +Q +  +  LWEEIS  M  
Sbjct: 377 DTTIKMGNYDNNHSVSPSSSRWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRR 436

Query: 74  DGINRSPGQCKSLWASLVQKFEQESKSEKK---SKKSWPYFEEMSGI 118
            G NRS  +CK  W ++ + F++  +S KK     K+ PYF ++  +
Sbjct: 437 LGYNRSAKRCKEKWENINKYFKKVKESNKKRPLDSKTCPYFHQLEAL 483

[Close]

BLAST of Lcy03g020210 vs. ExPASy Swiss-Prot
Match: Q9SDW0 (Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 34  KWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGINRSPGQCKSLWASLVQK 93
           +W  EE K+L+ +R EL   F  +K    LWE ++  M   G  RS  QCKS W +LV +
Sbjct: 51  QWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTR 110

Query: 94  FEQ-ESKSEKKSKKSWPYFEEMSGI 118
           ++  E+      ++ +P++ E+  I
Sbjct: 111 YKACETTEPDAIRQQFPFYNEIQSI 135

[Close]

BLAST of Lcy03g020210 vs. ExPASy Swiss-Prot
Match: Q9FX53 (Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 31/103 (30.10%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 18  KTSNSDAKPSKPVKR-NKWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGI 77
           ++S  D +   P KR   W  +E + LI  R  +   F  SK    LWE+IS+ M   G 
Sbjct: 69  ESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF 128

Query: 78  NRSPGQCKSLWASLVQKFEQESKSEK-KSKKSWPYFEEMSGIL 119
           +RSP  C   W +L+++F++    ++        Y++E+  IL
Sbjct: 129 DRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDIL 171

[Close]

BLAST of Lcy03g020210 vs. ExPASy TrEMBL
Match: A0A5D3BJD7 (Ribonuclease J isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00770 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 707 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 766

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 767 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 826

Query: 123 AVAAK 128
           AVA K
Sbjct: 827 AVATK 831

[Close]

BLAST of Lcy03g020210 vs. ExPASy TrEMBL
Match: A0A5A7UWF1 (Ribonuclease J isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00740 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 707 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 766

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 767 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 826

Query: 123 AVAAK 128
           AVA K
Sbjct: 827 AVATK 831

[Close]

BLAST of Lcy03g020210 vs. ExPASy TrEMBL
Match: A0A1S3CLZ6 (ribonuclease J isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502342 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 786 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 845

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 846 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 905

Query: 123 AVAAK 128
           AVA K
Sbjct: 906 AVATK 910

[Close]

BLAST of Lcy03g020210 vs. ExPASy TrEMBL
Match: A0A1S4E4Q7 (ribonuclease J isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502342 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 654 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 713

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 714 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 773

Query: 123 AVAAK 128
           AVA K
Sbjct: 774 AVATK 778

[Close]

BLAST of Lcy03g020210 vs. ExPASy TrEMBL
Match: A0A0A0LRV7 (Myb-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G002120 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 108/125 (86.40%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRGELH RFQV++GRMA
Sbjct: 786 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGELHDRFQVARGRMA 845

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  M ADGINRSPGQCKSLWASLVQKFEQESKSEKKSKK WPY EEMSGILS SE
Sbjct: 846 LWEEISNGMSADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKGWPYLEEMSGILSDSE 905

Query: 123 AVAAK 128
           AVA K
Sbjct: 906 AVATK 910

[Close]

BLAST of Lcy03g020210 vs. NCBI nr
Match: KAA0057791.1 (ribonuclease J isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 707 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 766

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 767 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 826

Query: 123 AVAAK 128
           AVA K
Sbjct: 827 AVATK 831

[Close]

BLAST of Lcy03g020210 vs. NCBI nr
Match: TYJ98475.1 (ribonuclease J isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 707 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 766

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 767 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 826

Query: 123 AVAAK 128
           AVA K
Sbjct: 827 AVATK 831

[Close]

BLAST of Lcy03g020210 vs. NCBI nr
Match: XP_016903216.1 (PREDICTED: ribonuclease J isoform X3 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 654 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 713

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 714 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 773

Query: 123 AVAAK 128
           AVA K
Sbjct: 774 AVATK 778

[Close]

BLAST of Lcy03g020210 vs. NCBI nr
Match: XP_008464473.1 (PREDICTED: ribonuclease J isoform X1 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EI+NE EE SDD+SLKTSNSD   SKPVKRNKWKPEEIKKLIKLRG+LH RFQV++GRMA
Sbjct: 786 EISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGQLHARFQVTRGRMA 845

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  MLADGINRSPGQCKSLW SLVQKFEQESKSEKKSKKSWPY EEMSGILS SE
Sbjct: 846 LWEEISNGMLADGINRSPGQCKSLWTSLVQKFEQESKSEKKSKKSWPYLEEMSGILSDSE 905

Query: 123 AVAAK 128
           AVA K
Sbjct: 906 AVATK 910

[Close]

BLAST of Lcy03g020210 vs. NCBI nr
Match: XP_038879032.1 (ribonuclease J isoform X1 [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 6.3e-50
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 3   EITNEGEEDSDDESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMA 62
           EITNE EE S D+SLKTSNSD  P KPVKRNKWKPEEIKKLIKLRGELH RFQV++GRMA
Sbjct: 785 EITNECEEVSGDKSLKTSNSDVNPLKPVKRNKWKPEEIKKLIKLRGELHARFQVARGRMA 844

Query: 63  LWEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILSGSE 122
           LWEEIS  M ADGINRSPGQCKSLWASLVQKFEQESKSEKKSK++WPYFEEMSGILS SE
Sbjct: 845 LWEEISNGMSADGINRSPGQCKSLWASLVQKFEQESKSEKKSKRNWPYFEEMSGILSDSE 904

Query: 123 AVAAK 128
           AVA K
Sbjct: 905 AVATK 909

[Close]

BLAST of Lcy03g020210 vs. TAIR 10
Match: AT5G63420.1 (RNA-metabolising metallo-beta-lactamase family protein )

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-36
Identity = 78/116 (67.24%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 7   EGEEDS--DDESLKTSNSDAKPS-KPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMAL 66
           EG+E+S  DDE    S+S+ K S K V++NKWKPEEIKK+I++RGELH RFQV KGRMAL
Sbjct: 790 EGKENSRDDDELADASDSETKSSPKRVRKNKWKPEEIKKVIRMRGELHSRFQVVKGRMAL 849

Query: 67  WEEISTSMLADGINRSPGQCKSLWASLVQKFEQESKSEKKSKKSWPYFEEMSGILS 120
           WEEIS+++ A+GINRSPGQCKSLWASL+QK+E ESK++++SK SWP+FE+M+ ILS
Sbjct: 850 WEEISSNLSAEGINRSPGQCKSLWASLIQKYE-ESKADERSKTSWPHFEDMNNILS 904

[Close]

BLAST of Lcy03g020210 vs. TAIR 10
Match: AT2G38250.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 34  KWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGINRSPGQCKSLWASLVQK 93
           +W  EE K+LI +RGEL   F  +K    LWE IS  M      RSP QCK  W +LV +
Sbjct: 41  QWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTR 100

Query: 94  FEQ-ESKSEKKSKKSWPYFEEMSGILS 120
           F+  E+   + +++ +P++++M  I +
Sbjct: 101 FKGCETMEAETARQQFPFYDDMQNIFT 127

[Close]

BLAST of Lcy03g020210 vs. TAIR 10
Match: AT1G76890.2 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 14  DESLKTSNSDAKPSKPVKRNKWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLA 73
           D ++K  N D   S     ++W   E++ LI++R  L   +Q +  +  LWEEIS  M  
Sbjct: 377 DTTIKMGNYDNNHSVSPSSSRWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRR 436

Query: 74  DGINRSPGQCKSLWASLVQKFEQESKSEKK---SKKSWPYFEEMSGI 118
            G NRS  +CK  W ++ + F++  +S KK     K+ PYF ++  +
Sbjct: 437 LGYNRSAKRCKEKWENINKYFKKVKESNKKRPLDSKTCPYFHQLEAL 483

[Close]

BLAST of Lcy03g020210 vs. TAIR 10
Match: AT5G01380.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 34  KWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGINRSPGQCKSLWASLVQK 93
           +W  EE K+L+ +R EL   F  +K    LWE ++  M   G  RS  QCKS W +LV +
Sbjct: 51  QWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTR 110

Query: 94  FEQ-ESKSEKKSKKSWPYFEEMSGI 118
           ++  E+      ++ +P++ E+  I
Sbjct: 111 YKACETTEPDAIRQQFPFYNEIQSI 135

[Close]

BLAST of Lcy03g020210 vs. TAIR 10
Match: AT1G13450.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 9.2e-07
Identity = 31/103 (30.10%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 18  KTSNSDAKPSKPVKR-NKWKPEEIKKLIKLRGELHVRFQVSKGRMALWEEISTSMLADGI 77
           ++S  D +   P KR   W  +E + LI  R  +   F  SK    LWE+IS+ M   G 
Sbjct: 69  ESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF 128

Query: 78  NRSPGQCKSLWASLVQKFEQESKSEK-KSKKSWPYFEEMSGIL 119
           +RSP  C   W +L+++F++    ++        Y++E+  IL
Sbjct: 129 DRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDIL 171

The following BLAST results are available for this feature:

BLAST of Lcy03g020210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W56	1.0e-34	67.24	Ribonuclease J OS=Arabidopsis thaliana OX=3702 GN=RNJ PE=1 SV=1	[more]
O80450	7.3e-09	36.78	Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=...	[more]
Q39117	3.6e-08	31.78	Trihelix transcription factor GT-2 OS=Arabidopsis thaliana OX=3702 GN=GT-2 PE=1 ...	[more]
Q9SDW0	2.6e-06	32.94	Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=...	[more]
Q9FX53	1.3e-05	30.10	Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 ...	[more]

BLAST of Lcy03g020210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJD7	2.3e-50	86.40	Ribonuclease J isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7UWF1	2.3e-50	86.40	Ribonuclease J isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3CLZ6	2.3e-50	86.40	ribonuclease J isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502342 PE=4 SV=1	[more]
A0A1S4E4Q7	2.3e-50	86.40	ribonuclease J isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502342 PE=4 SV=1	[more]
A0A0A0LRV7	1.2e-49	86.40	Myb-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G002120 PE...	[more]

BLAST of Lcy03g020210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057791.1	4.8e-50	86.40	ribonuclease J isoform X1 [Cucumis melo var. makuwa]	[more]
TYJ98475.1	4.8e-50	86.40	ribonuclease J isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016903216.1	4.8e-50	86.40	PREDICTED: ribonuclease J isoform X3 [Cucumis melo]	[more]
XP_008464473.1	4.8e-50	86.40	PREDICTED: ribonuclease J isoform X1 [Cucumis melo]	[more]
XP_038879032.1	6.3e-50	86.40	ribonuclease J isoform X1 [Benincasa hispida]	[more]

BLAST of Lcy03g020210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63420.1	7.2e-36	67.24	RNA-metabolising metallo-beta-lactamase family protein	[more]
AT2G38250.1	5.2e-10	36.78	Homeodomain-like superfamily protein	[more]
AT1G76890.2	2.6e-09	31.78	Duplicated homeodomain-like superfamily protein	[more]
AT5G01380.1	1.8e-07	32.94	Homeodomain-like superfamily protein	[more]
AT1G13450.1	9.2e-07	30.10	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 31..93 e-value: 0.0062 score: 25.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 27..91 score: 8.130088
None	No IPR available	GENE3D	1.10.10.60		coord: 35..96 e-value: 2.2E-14 score: 55.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR43694	RIBONUCLEASE J	coord: 3..127
None	No IPR available	CDD	cd12203	GT1	coord: 33..95 e-value: 3.98888E-22 score: 80.7871
IPR044822	Myb/SANT-like DNA-binding domain 4	PFAM	PF13837	Myb_DNA-bind_4	coord: 32..115 e-value: 2.3E-20 score: 72.8
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 29..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g020210.1	Lcy03g020210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0003723	RNA binding