Lcy03g019490 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g019490
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRING-type domain-containing protein
LocationChr03: 52990111 .. 52991381 (+)
RNA-Seq ExpressionLcy03g019490
SyntenyLcy03g019490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATTCCGGTGGGGCAGACCAACTGGACTCTGTAAATTTCATGGAAGCTTCTCACCTTCTTCCTCACACTTTCTTCCTTCTCTTTCCAATTACCGAACCACCAAATTCAAGACGAAGCAATGATTATTTTATAGAAGACCGATGGAATCAACGCAATCAAACGACATTTGATCACTTCTCTCCGCCTTCTCAGACAAGAAAGCCCTAAATCCGTGCAGAAATTTCAACTCTCGAGGTTTCGCAAGTTTCTCCAATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATCCATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGGTTCGTAAATCGCGTCTCGCTCTGTCAATAATGATTTCAAAATTTACTCGTTCAATTGAGGATGAAGAACAGAATTGATTCGATTCTATTTGAAAATTTTGCAGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACGGAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGGTACTGAAACGACGGCGTTTTCAACACCACCGATGAATTTACATTTCATTAATTAAATCATCGTAAAAATCATCCAAAATTCCTTGTTTCTCATGGTTCAAAAGAATTAAATGTTTGCGATTCGATGTAGAGGGATGATGACGAGAAAATTCAGTTGGACCAAGTTGAATTGGATCGCCGTAGAGCAACAAGATTGTGGTCCGTGCTGGTGATGAAGACGACTTGATTTCAGTTGGTCTGTACTTCTTCTTCTTCTTCTTTTCTTCCAAGGTGCTTGTTTCCATTAGAACTGCCCGTAATTTCCTCCATCGTTAACTTGCGAGGAAAACATTTGTCGTAATATCTGTGCTGATGTATGAGATGTCGTGATACAATCATTCTGGCATGTAAAGACTTTGAATACAGACACCCTTTTGGTTTATTTGAATGATTCTGATCATACTTGTTGTCAGTTCTTTATAAATTTTTGTGCGAAAAGTTGAAGTAGCTGAAACAAAAACCAAACCATTAGAATCGGTTTTTGCAGACGGATTGAAGAACAGTGAGAGGAAATTTGAGAATTTGAATCGAAGGGATGGAATTAAAGTGAATGCATGTAAGAGAGAGTTGTCTTCTAAACTTCT

mRNA sequence

TTCATTCCGGTGGGGCAGACCAACTGGACTCTGTAAATTTCATGGAAGCTTCTCACCTTCTTCCTCACACTTTCTTCCTTCTCTTTCCAATTACCGAACCACCAAATTCAAGACGAAGCAATGATTATTTTATAGAAGACCGATGGAATCAACGCAATCAAACGACATTTGATCACTTCTCTCCGCCTTCTCAGACAAGAAAGCCCTAAATCCGTGCAGAAATTTCAACTCTCGAGGTTTCGCAAGTTTCTCCAATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATCCATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACGGAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGAGGGATGATGACGAGAAAATTCAGTTGGACCAAGTTGAATTGGATCGCCGTAGAGCAACAAGATTGTGGTCCGTGCTGGTGATGAAGACGACTTGATTTCAGTTGGTCTGTACTTCTTCTTCTTCTTCTTTTCTTCCAAGGTGCTTGTTTCCATTAGAACTGCCCGTAATTTCCTCCATCGTTAACTTGCGAGGAAAACATTTGTCGTAATATCTGTGCTGATGTATGAGATGTCGTGATACAATCATTCTGGCATGTAAAGACTTTGAATACAGACACCCTTTTGGTTTATTTGAATGATTCTGATCATACTTGTTGTCAGTTCTTTATAAATTTTTGTGCGAAAAGTTGAAGTAGCTGAAACAAAAACCAAACCATTAGAATCGGTTTTTGCAGACGGATTGAAGAACAGTGAGAGGAAATTTGAGAATTTGAATCGAAGGGATGGAATTAAAGTGAATGCATGTAAGAGAGAGTTGTCTTCTAAACTTCT

Coding sequence (CDS)

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATCCATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACGGAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGAGGGATGATGACGAGAAAATTCAGTTGGACCAAGTTGAATTGGATCGCCGTAGAGCAACAAGATTGTGGTCCGTGCTGGTGA

Protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCGPCW
Homology
BLAST of Lcy03g019490 vs. ExPASy TrEMBL
Match: A0A6J1E765 (uncharacterized protein LOC111430042 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.8e-46
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           L+EA   EDDKLDG A+EAKRRLDERLR+QRKS        RK +WTKLNW  VEQ  CG
Sbjct: 61  LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS--------RKLNWTKLNWTGVEQDKCG 113

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 113

BLAST of Lcy03g019490 vs. ExPASy TrEMBL
Match: A0A6J1E1Y4 (uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430042 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.8e-46
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           L+EA   EDDKLDG A+EAKRRLDERLR+QRKS   R     K +WTKLNW  VEQ  CG
Sbjct: 61  LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS---RKFNWTKLNWTKLNWTGVEQDKCG 118

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 118

BLAST of Lcy03g019490 vs. ExPASy TrEMBL
Match: A0A1S3B9W3 (uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487385 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.8e-46
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP V AQ LTRRS+LCLYTSNHE LL SNPS+QR L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMQRRL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERL-RSQRKSED-GRGMMTRKFSWTKLNWIAVEQQD 120
           L+EA    +D+LDGIA+EAKRRLDERL R+QRKSED GR MM RKFSW KLNWI VE+  
Sbjct: 61  LMEA--GGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDK 120

Query: 121 CGPCW 124
           CG CW
Sbjct: 121 CGQCW 123

BLAST of Lcy03g019490 vs. ExPASy TrEMBL
Match: A0A5A7U973 (Putative E3 ubiquitin-protein ligase RHY1A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00720 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 96/125 (76.80%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP V AQ LTRRS+LCLYTSNHE LL SNPS+QR L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMQRRL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERL-RSQRKSED-GRGMMTRKFSWTKLNWIAVEQQD 120
           L+EA    +D+LDGIA+EAKRRLDERL R+QRKSED GR MM RKFSW KLNWI VE+  
Sbjct: 61  LMEA--GGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDK 120

Query: 121 CGPCW 124
            G CW
Sbjct: 121 SGQCW 123

BLAST of Lcy03g019490 vs. ExPASy TrEMBL
Match: A0A6J1JME7 (uncharacterized protein LOC111485711 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485711 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 94/123 (76.42%), Postives = 101/123 (82.11%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           L+EA   EDDKL G A+EAKRRLDERLR+Q KS        RKF+WTK NW  VEQ  CG
Sbjct: 61  LIEA--DEDDKLVGSAREAKRRLDERLRTQMKS--------RKFNWTKFNWTGVEQDKCG 113

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 113

BLAST of Lcy03g019490 vs. NCBI nr
Match: XP_038876903.1 (uncharacterized protein LOC120069257 [Benincasa hispida])

HSP 1 Score: 211.8 bits (538), Expect = 3.2e-51
Identity = 101/123 (82.11%), Postives = 111/123 (90.24%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSPP+AAQ LTRRS+LCLYTSNHE+LLASNPSLQRSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPPIAAQALTRRSVLCLYTSNHESLLASNPSLQRSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           L+EA   ED++LDG A+EAKRRLD+RLR+QRKSEDGR MM RKFSWTKLNW  VE+  CG
Sbjct: 61  LIEA--GEDEELDGTAREAKRRLDKRLRTQRKSEDGREMMRRKFSWTKLNWSGVEEDKCG 120

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 121

BLAST of Lcy03g019490 vs. NCBI nr
Match: XP_023515554.1 (uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 99/123 (80.49%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP VAAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHVAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           LVEA   EDDKLDG A+EAKRRLDERLR+QRKS        RKF+WTKLNW +VEQ  CG
Sbjct: 61  LVEA--DEDDKLDGSAREAKRRLDERLRTQRKS--------RKFNWTKLNWTSVEQDKCG 113

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 113

BLAST of Lcy03g019490 vs. NCBI nr
Match: XP_022921935.1 (uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           L+EA   EDDKLDG A+EAKRRLDERLR+QRKS        RK +WTKLNW  VEQ  CG
Sbjct: 61  LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS--------RKLNWTKLNWTGVEQDKCG 113

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 113

BLAST of Lcy03g019490 vs. NCBI nr
Match: XP_008443904.1 (PREDICTED: uncharacterized protein LOC103487385 isoform X1 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNK+WSDSP V AQ LTRRS+LCLYTSNHE LL SNPS+QR L
Sbjct: 1   MAGMLPGVECARRRRCHQNKIWSDSPQVDAQVLTRRSVLCLYTSNHEALLVSNPSMQRRL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERL-RSQRKSED-GRGMMTRKFSWTKLNWIAVEQQD 120
           L+EA    +D+LDGIA+EAKRRLDERL R+QRKSED GR MM RKFSW KLNWI VE+  
Sbjct: 61  LMEA--GGEDELDGIAREAKRRLDERLWRTQRKSEDNGREMMRRKFSWRKLNWIGVEEDK 120

Query: 121 CGPCW 124
           CG CW
Sbjct: 121 CGQCW 123

BLAST of Lcy03g019490 vs. NCBI nr
Match: XP_022921934.1 (uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 96/123 (78.05%), Postives = 103/123 (83.74%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSL 60
           MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSL
Sbjct: 1   MAGMLPGVECARRRRCHQNKVWSDSPHIAAQALTRRSVLCLYTSNHETLLASNPSLERSL 60

Query: 61  LVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTKLNWIAVEQQDCG 120
           L+EA   EDDKLDG A+EAKRRLDERLR+QRKS   R     K +WTKLNW  VEQ  CG
Sbjct: 61  LIEA--DEDDKLDGSAREAKRRLDERLRTQRKS---RKFNWTKLNWTKLNWTGVEQDKCG 118

Query: 121 PCW 124
            CW
Sbjct: 121 QCW 118

BLAST of Lcy03g019490 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-15
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 0

Query: 1   MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETL 60
           MAGMLPGVECARRRR H       +PP+           A    TRR    LYT+NHE+ 
Sbjct: 1   MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61  LASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLRSQRKSEDGRGMMTRKFSWTK 109
            A     +RS+  ++  ++ D+KLDG AKEAK+RL++RLR   ++  G+ + T+  +W+K
Sbjct: 61  QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLRIPPRTSSGKMVKTKGINWSK 115

BLAST of Lcy03g019490 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0

Query: 1  MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETL 60
          MAGMLPGVECARRRR H       +PP+           A    TRR    LYT+NHE+ 
Sbjct: 1  MAGMLPGVECARRRRFH-----GGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESH 60

Query: 61 LASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLR 89
           A     +RS+  ++  ++ D+KLDG AKEAK+RL++RLR
Sbjct: 61 QAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E7655.8e-4678.05uncharacterized protein LOC111430042 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1E1Y49.8e-4678.05uncharacterized protein LOC111430042 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3B9W39.8e-4677.60uncharacterized protein LOC103487385 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7U9731.4e-4476.80Putative E3 ubiquitin-protein ligase RHY1A OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1JME71.9e-4476.42uncharacterized protein LOC111485711 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
XP_038876903.13.2e-5182.11uncharacterized protein LOC120069257 [Benincasa hispida][more]
XP_023515554.11.1e-4680.49uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo][more]
XP_022921935.11.2e-4578.05uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata][more]
XP_008443904.12.0e-4577.60PREDICTED: uncharacterized protein LOC103487385 isoform X1 [Cucumis melo][more]
XP_022921934.12.0e-4578.05uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT2G15580.22.3e-1541.67RING/U-box superfamily protein [more]
AT2G15580.11.4e-1246.00RING/U-box superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g019490.1Lcy03g019490.1mRNA