Lcy03g019030 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g019030
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 52649555 .. 52649950 (+)
RNA-Seq ExpressionLcy03g019030
SyntenyLcy03g019030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTTCTTAAACATCTCCAAATGCTGCTGCTAATGGCGCCCCTTCTCCTCCCCTCTCAAGCCAACTCCATTTTCGATCGCACAGATACAGGCACTTTTGATCTTCCCCAACAAACAACCCATGGAGGCCTTTCTTCCTCACAGACATTTCGCCCTCAGCCTCGCAACACCAGCAATGCGGTTTTCTCTCTTCATCGCGATGAACTATCGGAGAAAGTTGCCGTCCGACGCTTCAGGTCCCATAGCCGTTCGATGAGGAAACGCCGAAGACGCGGCCGGCGACGCGCGTACCGGCATTCCGAAGGTTTTATTCCGGCGGTTTCTTTGTCGTACATTTGCTTCGCGATTCTTTCATCGATTCTGCACATCCTGGTTTCTGTTAACACGTTTTGA

mRNA sequence

ATGGCCGTTCTTAAACATCTCCAAATGCTGCTGCTAATGGCGCCCCTTCTCCTCCCCTCTCAAGCCAACTCCATTTTCGATCGCACAGATACAGGCACTTTTGATCTTCCCCAACAAACAACCCATGGAGGCCTTTCTTCCTCACAGACATTTCGCCCTCAGCCTCGCAACACCAGCAATGCGGTTTTCTCTCTTCATCGCGATGAACTATCGGAGAAAGTTGCCGTCCGACGCTTCAGGTCCCATAGCCGTTCGATGAGGAAACGCCGAAGACGCGGCCGGCGACGCGCGTACCGGCATTCCGAAGGTTTTATTCCGGCGGTTTCTTTGTCGTACATTTGCTTCGCGATTCTTTCATCGATTCTGCACATCCTGGTTTCTGTTAACACGTTTTGA

Coding sequence (CDS)

ATGGCCGTTCTTAAACATCTCCAAATGCTGCTGCTAATGGCGCCCCTTCTCCTCCCCTCTCAAGCCAACTCCATTTTCGATCGCACAGATACAGGCACTTTTGATCTTCCCCAACAAACAACCCATGGAGGCCTTTCTTCCTCACAGACATTTCGCCCTCAGCCTCGCAACACCAGCAATGCGGTTTTCTCTCTTCATCGCGATGAACTATCGGAGAAAGTTGCCGTCCGACGCTTCAGGTCCCATAGCCGTTCGATGAGGAAACGCCGAAGACGCGGCCGGCGACGCGCGTACCGGCATTCCGAAGGTTTTATTCCGGCGGTTTCTTTGTCGTACATTTGCTTCGCGATTCTTTCATCGATTCTGCACATCCTGGTTTCTGTTAACACGTTTTGA

Protein sequence

MAVLKHLQMLLLMAPLLLPSQANSIFDRTDTGTFDLPQQTTHGGLSSSQTFRPQPRNTSNAVFSLHRDELSEKVAVRRFRSHSRSMRKRRRRGRRRAYRHSEGFIPAVSLSYICFAILSSILHILVSVNTF
Homology
BLAST of Lcy03g019030 vs. ExPASy TrEMBL
Match: A0A0A0LTC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 65/143 (45.45%), Postives = 81/143 (56.64%), Query Frame = 0

Query: 1   MAVLKHLQMLLLMAPLL-LPSQANSIFDRTDTGT-FDLPQQTTH--GGLSSSQTFRPQP- 60
           MA LK L +LL++APLL L SQ N IF  TD+ T  +LPQQTT+    L SS      P 
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  ---RNTSNAVFSLHRDELS-EKVAVRRFRSHSRSMRKRRRRGRRRAYRH----SEGFIPA 120
              R   N     H  EL+  K++++R RS   S+RKRRRR  +RA+R     S G    
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120

Query: 121 VSLSYICFAILSSILHILVSVNT 131
           VSLSYI F I  SILH L+  N+
Sbjct: 121 VSLSYIWFGIFWSILHNLIYFNS 143

BLAST of Lcy03g019030 vs. ExPASy TrEMBL
Match: A0A5D3BAD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00490 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 0

Query: 1   MAVLKHLQMLLLMAP--LLLPSQANSIFDRTDTGT-FDLPQQTTH-GGLSSSQTFRPQP- 60
           MA  K L +LL+MAP  LLL SQ NSIF +TD+ T  +LPQQT +   L SS      P 
Sbjct: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPL 75

Query: 61  ---RNTSNAVFSLHRDELS-EKVAVRRFRSHSRSMRKRRRRGRRRAYRH---SEGFIPAV 120
              R   N   +  RD+L+  +++++R RS+  S+RKRRRR   RA+     S G +P V
Sbjct: 76  SNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAWHRSYSSRGCLPTV 135

Query: 121 SLSYICFAILSSI 122
           SL YI F IL SI
Sbjct: 136 SLLYIWFGILWSI 148

BLAST of Lcy03g019030 vs. NCBI nr
Match: KAA0035099.1 (hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa] >TYJ95979.1 hypothetical protein E5676_scaffold271G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-05
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 0

Query: 1   MAVLKHLQMLLLMAP--LLLPSQANSIFDRTDTGT-FDLPQQTTH-GGLSSSQTFRPQP- 60
           MA  K L +LL+MAP  LLL SQ NSIF +TD+ T  +LPQQT +   L SS      P 
Sbjct: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPL 75

Query: 61  ---RNTSNAVFSLHRDELS-EKVAVRRFRSHSRSMRKRRRRGRRRAYRH---SEGFIPAV 120
              R   N   +  RD+L+  +++++R RS+  S+RKRRRR   RA+     S G +P V
Sbjct: 76  SNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAWHRSYSSRGCLPTV 135

Query: 121 SLSYICFAILSSI 122
           SL YI F IL SI
Sbjct: 136 SLLYIWFGILWSI 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTC21.9e-0745.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1[more]
A0A5D3BAD81.8e-0545.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0035099.13.7e-0545.11hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa] >TYJ9597... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g019030.1Lcy03g019030.1mRNA