Lcy03g006960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g006960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr03: 36216128 .. 36217383 (-)
RNA-Seq ExpressionLcy03g006960
SyntenyLcy03g006960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTACAACCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCTCTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGGTATATATTCAGTGAAGAGCGGGTATCGTTTAGGCCAGGGGCCATCGTTGGCCCAAAGCCCTTCATCCTCGTCTTCTGAGTTAATACATAGATGGTGGACTACCTGTTGGAATATGAAGTTACCTAGCAAGATTAAAATCTTCTTCTGGAGACTGTATTTAGATCGGCTGCCCACGATGGATAACTTGTTTAGGCGGAGAATAGACTCACTGAATATATGTGTGTGCTGCGGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATACGAGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGGTTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGTCTCGACTGCGAATCTGGCAGATTGAGTTGTTGGGTACCTGAACGCTTTCCGTGACTCGAATAAGAGGGGGATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGCAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAAGTGAATGTTGATGCGGCCTTTTATCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGCAGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGGCTGGCGGCTTCCTTCAGTTTGAGGCTTACGGTGGAGACGGCTACCAGACCTTTTGTGCTAGAGACAGATTCTATGCGGGTGTCTAAGCTTTTGCAGCGTGATGTGGAGGAGGTGTTGGAGTTGGGGATGCTGGTGGAGGATGCGGTGAGGGGCGTTCCAGCGAGGTGGTTGGTAGGCGGCAACTTTACGTTCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGCAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGGTGA

mRNA sequence

ATGACGTTACAACCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCTCTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGGTATATATTCAGTGAAGAGCGGGTATCGTTTAGGCCAGGGGCCATCGTTGGCCCAAAGCCCTTCATCCTCGTCTTCTGAGTTAATACATAGATGGTGGACTACCTGTTGGAATATGAAGTTACCTAGCAAGATTAAAATCTTCTTCTGGAGACTGTATTTAGATCGGCTGCCCACGATGGATAACTTGTTTAGGCGGAGAATAGACTCACTGAATATATGTGTGTGCTGCGGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATACGAGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGGTTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAAGTGAATGTTGATGCGGCCTTTTATCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGCAGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGGCTGGCGGCTTCCTTCAGTTTGAGGCTTACGGTGGAGACGGCTACCAGACCTTTTGTGCTAGAGACAGATTCTATGCGGGTGTCTAAGCTTTTGCAGCGTGATGTGGAGGAGGTGTTGGAGTTGGGGATGCTGGTGGAGGATGCGGTGAGGGGCGTTCCAGCGAGGTGGTTGGTAGGCGGCAACTTTACGTTCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGCAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGGTGA

Coding sequence (CDS)

ATGACGTTACAACCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCTCTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGGTATATATTCAGTGAAGAGCGGGTATCGTTTAGGCCAGGGGCCATCGTTGGCCCAAAGCCCTTCATCCTCGTCTTCTGAGTTAATACATAGATGGTGGACTACCTGTTGGAATATGAAGTTACCTAGCAAGATTAAAATCTTCTTCTGGAGACTGTATTTAGATCGGCTGCCCACGATGGATAACTTGTTTAGGCGGAGAATAGACTCACTGAATATATGTGTGTGCTGCGGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATACGAGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGGTTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAAGTGAATGTTGATGCGGCCTTTTATCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGCAGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGGCTGGCGGCTTCCTTCAGTTTGAGGCTTACGGTGGAGACGGCTACCAGACCTTTTGTGCTAGAGACAGATTCTATGCGGGTGTCTAAGCTTTTGCAGCGTGATGTGGAGGAGGTGTTGGAGTTGGGGATGCTGGTGGAGGATGCGGTGAGGGGCGTTCCAGCGAGGTGGTTGGTAGGCGGCAACTTTACGTTCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGCAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGGTGA

Protein sequence

MTLQPDARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRLGQGPSLAQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCCGRMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKVGAPEFDGFKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFSLRLTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLSLLAEDGVHEFPQARQER
Homology
BLAST of Lcy03g006960 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.2e-51
Identity = 132/398 (33.17%), Postives = 192/398 (48.24%), Query Frame = 0

Query: 17   GQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRLG-QGPSLA 76
            G W   ++R  F+  E + ILSIP+ R A ++ +IW++EK+G+YSV+SGY++        
Sbjct: 762  GGWQGDVVRDEFTPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV 821

Query: 77   QSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCCG 136
            Q+PSSSSSE +  WW   W M +P+KIK+F WRL LDRLPT  NL +R ++  N C  CG
Sbjct: 822  QAPSSSSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCG 881

Query: 137  RMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVLL 196
            R GE S+HLFW CK    +  ++ FG +           +LR+    L    FEE  V++
Sbjct: 882  RNGEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVI 941

Query: 197  WAIWFRRN---------------------------EMRQKKK-------------VGAPE 256
            W +W +RN                           E R+ K              +  P 
Sbjct: 942  WGLWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSNPITGRVTNTAEILWQPP 1001

Query: 257  FDG-FKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFSLR 316
             +G +K+N DA+F      AG+G++  +  GQV   A+ + ENI+  D AE +AA   L+
Sbjct: 1002 DEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQ 1061

Query: 317  LTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFREGN 373
            L  E    P                 +E++ E G +V  A            NF  REGN
Sbjct: 1062 LASEIGMHP----------------ALEDLSETGEIVLKAKNFWTQSLHASFNFVKREGN 1121

BLAST of Lcy03g006960 vs. ExPASy TrEMBL
Match: A0A803PAX6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.0e-42
Identity = 106/392 (27.04%), Postives = 192/392 (48.98%), Query Frame = 0

Query: 16   SGQWNEVLIRQHFSQQEVRYILSI-PLRRFACDNVVIWHFEKSGIYSVKSGYRLGQGPSL 75
            +G+W   LI++ F   ++  IL + P ++ + D+ +IWHF   G+Y+V+SGY + +  + 
Sbjct: 935  NGEWKLDLIKESFHNDDIPIILGMAPCKKHSNDD-LIWHFTSDGLYTVRSGYEVAEIDNY 994

Query: 76   AQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCC 135
               PSS ++    +WWT+ W ++ P KI+ F WR+    +P    L RR ++    C  C
Sbjct: 995  KAGPSSEAT--TRKWWTSIWKIEAPPKIRNFLWRVCNGWIPVNTILQRRGMNINTSCYWC 1054

Query: 136  GRMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVL 195
            G+  E+  H  W C ++++I     +  +L + K   I  L+ +++N++  + F  ++++
Sbjct: 1055 GQAEETIEHCLWFCPYSKQIWKKYPWWKVLKQSKGTIIDILI-NIRNQVAKEEFNFFIIM 1114

Query: 196  LWAIWFRRNE------------------------MRQKKKVGA--------------PEF 255
             W IW RRN+                        M Q  K+ +              P  
Sbjct: 1115 SWLIWNRRNKKRLNHFMSSQESWLKWAQMEVDYIMHQDPKLESHNLTKPLKHLGWEPPPV 1174

Query: 256  DGFKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFSLRLT 315
            + F +N DA+ +    E G+GVV R + G+V+  A+     +   + AE LA    + L 
Sbjct: 1175 NIFCINSDASVHYTEAEIGLGVVIRTNKGEVTAAATQHVNGVFSIELAEALAIQMGISLA 1234

Query: 316  VETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFREGNRV 369
            V+T+  PF++++D +RV + ++   +   + G L+ D V           + T R  NRV
Sbjct: 1235 VQTSAIPFIIQSDCLRVIEYIKGKFQAKTDWGALL-DEVSDPAFVHCQAASHTSRNNNRV 1294

BLAST of Lcy03g006960 vs. ExPASy TrEMBL
Match: A0A2N9HE46 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37832 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.0e-42
Identity = 115/396 (29.04%), Postives = 180/396 (45.45%), Query Frame = 0

Query: 16   SGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRLGQGPSLA 75
            S  WNE ++   F   E   IL IPL +++ D+ +IW   K+G Y+V+SGY L    S +
Sbjct: 1293 SNTWNEDIVTATFLPFEADIILKIPLSQYSYDDTLIWGGTKNGAYAVRSGYHLLLHESHS 1352

Query: 76   QSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCCG 135
              P  S++ L+   W T W++K+P K++ F WR   + LPT  NL RR I    +C+ C 
Sbjct: 1353 AEPGPSNTSLLTNVWNTIWSLKVPPKVRHFLWRASHESLPTRQNLHRRHILDDPVCITCN 1412

Query: 136  RMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVLL 195
               E+ +H+ W C  ++ +  S  +   L+R    D + LL +    L     + + +L 
Sbjct: 1413 SEPETIIHILWLCSTSQNVWQSVLWSHKLTRDTYSDFQELLLNCVQNLTLPELQLFAMLS 1472

Query: 196  WAIWFRRNEMRQKKKVGA------------------------------------------ 255
            W++W+RRN +R  K V A                                          
Sbjct: 1473 WSLWYRRNCVRLNKPVEAITSLLPRTKELLQEYIQVQESPSPTQKQVIPQLQSRGSVCWR 1532

Query: 256  -PEFDGFKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFS 315
             PE    K+N D A + E GEAGVGV+ R+S G V  + S         +  E +AA  +
Sbjct: 1533 PPEMGRVKINYDGAVFTEMGEAGVGVIIRNSQGVVMASLSQRILFPHSVEAVEAIAARAA 1592

Query: 316  LRLTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFRE 369
            ++L ++   +   LE DS+ + K L +        G ++ D          V      RE
Sbjct: 1593 VQLALDLGFQDVELEGDSINIVKALSQTETNYTLYGHIINDTKLVSQRLASVKFMHVNRE 1652

BLAST of Lcy03g006960 vs. ExPASy TrEMBL
Match: A0A2N9FBQ4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12524 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.0e-42
Identity = 115/396 (29.04%), Postives = 180/396 (45.45%), Query Frame = 0

Query: 16   SGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRLGQGPSLA 75
            S  WNE ++   F   E   IL IPL +++ D+ +IW   K+G Y+V+SGY L    S +
Sbjct: 1066 SNTWNEDIVTATFLPFEADIILKIPLSQYSYDDTLIWGGTKNGAYAVRSGYHLLLHESHS 1125

Query: 76   QSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCCG 135
              P  S++ L+   W T W++K+P K++ F WR   + LPT  NL RR I    +C+ C 
Sbjct: 1126 AEPGPSNTSLLTNVWNTIWSLKVPPKVRHFLWRASHESLPTRQNLHRRHILDDPVCITCN 1185

Query: 136  RMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVLL 195
               E+ +H+ W C  ++ +  S  +   L+R    D + LL +    L     + + +L 
Sbjct: 1186 SEPETIIHILWLCSTSQNVWQSVLWSHKLTRDTYSDFQELLLNCVQNLTLPELQLFAMLS 1245

Query: 196  WAIWFRRNEMRQKKKVGA------------------------------------------ 255
            W++W+RRN +R  K V A                                          
Sbjct: 1246 WSLWYRRNCVRLNKPVEAITSLLPRTKELLQEYIQVQESPSPTQKQVIPQLQSRGSVCWR 1305

Query: 256  -PEFDGFKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFS 315
             PE    K+N D A + E GEAGVGV+ R+S G V  + S         +  E +AA  +
Sbjct: 1306 PPEMGRVKINYDGAVFTEMGEAGVGVIIRNSQGVVMASLSQRILFPHSVEAVEAIAARAA 1365

Query: 316  LRLTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFRE 369
            ++L ++   +   LE DS+ + K L +        G ++ D          V      RE
Sbjct: 1366 VQLALDLGFQDVELEGDSINIVKALSQTETNYTLYGHIINDTKLVSQRLASVKFMHVNRE 1425

BLAST of Lcy03g006960 vs. ExPASy TrEMBL
Match: A0A803P3X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-41
Identity = 118/407 (28.99%), Postives = 188/407 (46.19%), Query Frame = 0

Query: 9    VRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRL 68
            V DL   +G+W+E  +R  F+  +   IL +P   +  ++ V+WH+ K G YSV+SGYR+
Sbjct: 1385 VIDLKKINGEWDEEFVRAVFNPTDADLILRMPTSEWDIEDKVLWHYSKDGEYSVRSGYRM 1444

Query: 69   GQGPSLAQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSL 128
                +L      S +E+  +WW   W +K+P K+K F W+L    LPT   L RR I   
Sbjct: 1445 --AAALQVRDVQSDTEVTEKWWRLLWKLKIPPKVKHFVWKLAHSWLPTNAVLARRNIPVE 1504

Query: 129  NIC-VCCGRMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDW 188
              C  C   + E   H  W C+  RE+  S GF   + R  ++D+   L  +   L  + 
Sbjct: 1505 PYCNRCFNGVYEDVFHAIWCCRVNREVWKSTGFYGKIQRQGSEDVLAFLMRISTILSKEE 1564

Query: 189  FEEWVVLLWAIWFRRN-----------------------------------EMRQKKKVG 248
            FE ++VL W +W+ RN                                   ++R+  +  
Sbjct: 1565 FEFFLVLSWNLWYVRNSVNHGGHKPQACAILEWCSKFLSEFRESNTPKRDRQVREAARWT 1624

Query: 249  APEFDGFKVNVDAAFYLESGEAGVGVVCRDSWGQV-SFTASVFHENIRDADFAEGLAASF 308
             P  D FK+NVDA    E+G A +  V RD  G V S  A+V  +N+     AE  A + 
Sbjct: 1625 PPGIDAFKINVDAGVRTEAGVASISSVVRDHAGMVHSAAATVLLQNMTPL-HAELQAIAR 1684

Query: 309  SLRLTVETATRPFVLETDSMRVSKLLQRDVE---EVLELGMLVEDAVRGVPARWLVGGNF 368
             L+  ++     F +E+D ++   L+QR  E   +V E+   +   ++ V  R   G +F
Sbjct: 1685 GLQAGIQCNLPAFNVESDCLQAVTLVQRKEEGCRDVDEIVAHIRSLLQNVRVR---GVSF 1744

Query: 369  TFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLSLLAEDGVHEFPQ 376
             +RE N+VAH LA  A+ ++   +W+   P C    +  D  +  P+
Sbjct: 1745 VYREANKVAHILANEALLNKASALWIGVVPPCASQAVMNDSPNPLPR 1785

BLAST of Lcy03g006960 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 211.1 bits (536), Expect = 1.7e-50
Identity = 132/398 (33.17%), Postives = 192/398 (48.24%), Query Frame = 0

Query: 17   GQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRLG-QGPSLA 76
            G W   ++R  F+  E + ILSIP+ R A ++ +IW++EK+G+YSV+SGY++        
Sbjct: 762  GGWQGDVVRDEFTPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV 821

Query: 77   QSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCCG 136
            Q+PSSSSSE +  WW   W M +P+KIK+F WRL LDRLPT  NL +R ++  N C  CG
Sbjct: 822  QAPSSSSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCG 881

Query: 137  RMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWFEEWVVLL 196
            R GE S+HLFW CK    +  ++ FG +           +LR+    L    FEE  V++
Sbjct: 882  RNGEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVI 941

Query: 197  WAIWFRRN---------------------------EMRQKKK-------------VGAPE 256
            W +W +RN                           E R+ K              +  P 
Sbjct: 942  WGLWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEFREAKSNPITGRVTNTAEILWQPP 1001

Query: 257  FDG-FKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFSLR 316
             +G +K+N DA+F      AG+G++  +  GQV   A+ + ENI+  D AE +AA   L+
Sbjct: 1002 DEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQ 1061

Query: 317  LTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFREGN 373
            L  E    P                 +E++ E G +V  A            NF  REGN
Sbjct: 1062 LASEIGMHP----------------ALEDLSETGEIVLKAKNFWTQSLHASFNFVKREGN 1121

BLAST of Lcy03g006960 vs. NCBI nr
Match: TXG66198.1 (hypothetical protein EZV62_007473 [Acer yangbiense])

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-39
Identity = 109/376 (28.99%), Postives = 172/376 (45.74%), Query Frame = 0

Query: 4   QPDARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVK 63
           Q +A V DL    G+WN  L+   F   +   IL++P      D+ + WHF+K G YSV+
Sbjct: 100 QENALVSDLSLPYGEWNSDLVHNTFRPDDATLILNLPRLSPNRDDTLCWHFDKRGFYSVR 159

Query: 64  SGYRLGQGPSLAQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRR 123
           SGY++  G       +  SS  +  WW   W   +P+K KIFFW+ +   LPT   L R 
Sbjct: 160 SGYKMALG---LNERTGYSSLQLSSWWHFLWECNVPNKCKIFFWKAFHGWLPTFATLSRC 219

Query: 124 RIDSLNICVCCGRMGESSLHLFWHCKHTREIMWSAGFG-AILSRCKADDIKFLLRDVKNE 183
           R+D ++ C+ C    E+  H+ W+C+   +  W    G  +L R    D   ++  + + 
Sbjct: 220 RVDVMDCCILCCAASETITHILWYCQLAVD-GWRMLLGEEVLQRISVSDFSDIVMCLCST 279

Query: 184 LEWDWFEEWVVLLWAIWFRRNEMRQKKKVGA--------PEFDGFKVNVDAAFYLESGEA 243
           +  D F  +++  W +W  RN +       A        P+ DGFK+N  A+F L SG+A
Sbjct: 280 INNDLFNLFILGYWRLWTNRNCVIHGSVGWAAANTIWKPPKLDGFKINCYASFRLRSGKA 339

Query: 244 GVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFSLRLTVETATRPFVLETDSMRVS 303
           GV V+  D  G      S         +  E  A    L+L ++      VLE+D+  V 
Sbjct: 340 GVSVIIPDYKGTAIVVKSSPVLGCNSVEMLEAQACLVGLQLAIDVGISSVVLESDTDGVI 399

Query: 304 KLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFREGNRVAHRLARLAMEDRCDRVWM 363
            LL   V    ++G ++  ++    +  L+      R  N VAH L  LA       VW+
Sbjct: 400 HLLFDHVVPHTKMGAIIRSSLALGASMNLLSIEAIHRGANSVAHNLTDLAFSLDGPVVWL 459

Query: 364 EEGPSCVLSLLAEDGV 371
           ++ PS +  L+  D +
Sbjct: 460 DDLPSDIARLVHLDSI 471

BLAST of Lcy03g006960 vs. NCBI nr
Match: XP_023925698.1 (uncharacterized protein LOC112037116 [Quercus suber])

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-38
Identity = 107/355 (30.14%), Postives = 175/355 (49.30%), Query Frame = 0

Query: 19  WNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRLGQGPSLAQSP 78
           WN   I Q+F+ ++   IL +PL R    + + W   KSG Y+V+SGY++ +        
Sbjct: 522 WNRDFIMQNFNHEDAEAILRVPLSRRYISDSLFWTVNKSGEYTVRSGYQVARKLQKEADW 581

Query: 79  SSSSSELIHRW-WTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSLNICVCCGRM 138
           + SS+ ++    W T W +K+P+KIK+F WR   + LPT  NL +RR+   N C  C   
Sbjct: 582 AESSNGVVGGLVWRTLWKLKVPNKIKVFGWRACRNILPTRVNLVQRRVIQDNKCEACKIE 641

Query: 139 GESSLHLFWHCKHTREIMWSAGFGAILSRCKAD--DIKFLLRDVKNELEWDWFEEWVVLL 198
            E+ +H  W+C   R++ W AG+ A + +C  D  D+  L+ ++ N L  +  E+++V  
Sbjct: 642 AETGIHALWNCGVARDV-W-AGYTARVQKCSGDQADMLQLMEEMINRLSTEELEQFLVQS 701

Query: 199 WAIWFRRNEMRQKKKVGAPEFDGFKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFH 258
           W IW +RN +   KK+ APE              E G +G+G + R+  G+V  + S   
Sbjct: 702 WIIWNQRNGLIHGKKLQAPE--------------EDGTSGIGAIIRNDRGEVMASLSAKG 761

Query: 259 ENIRDADFAEGLAASFSLRLTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAV 318
             +  ++ AE LA   ++   +E      VLE D+  +   L      V  LG +++D +
Sbjct: 762 PPVTCSEDAEILACRRAVNFAMECGFSELVLEGDNQAIMTALSSRRGLVSRLGHIIQDVI 821

Query: 319 RGVPARWLVGGNFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLSLLAEDGV 371
             + +       F  R  N  AH LAR A +   D VW+E+ P  V+  +  D +
Sbjct: 822 CMLNSLRWSQVLFAKRSANTAAHALARYAKDLIEDVVWIEDSPPPVVEAMYLDSI 860

BLAST of Lcy03g006960 vs. NCBI nr
Match: XP_006487889.1 (uncharacterized protein LOC102617714 [Citrus sinensis])

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-38
Identity = 115/402 (28.61%), Postives = 174/402 (43.28%), Query Frame = 0

Query: 2    TLQPDARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYS 61
            TL     V DL   +  W + +I QHF +++   I+ I L +    +  +WH++K G YS
Sbjct: 833  TLDIQPVVADLIDENQNWKKEMIYQHFMKEDAAMIVRIQLPKTPKPDQYLWHYDKYGQYS 892

Query: 62   VKSGYRLGQGPSLAQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLF 121
            VKSGY++        SP SS S L    W   W  +LP KIKIF WR   + LPT  NL+
Sbjct: 893  VKSGYQIALKLKCPNSPCSSDSSLSQ--WNVIWAAELPEKIKIFMWRAVKNLLPTASNLW 952

Query: 122  RRRIDSLNICVCCGRMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKN 181
            RR+I    IC  CG   E  +H    CK  +++  +AG    + +    D+  +L +++ 
Sbjct: 953  RRKIVGSPICRRCGVKNEDVIHALLDCKVAKKVWRNAGCAEEIEKLVQQDLMAVLVEIQR 1012

Query: 182  ELEWDWFEEWVVLLWAIWFRRN-------------------------------------- 241
            +      E  VVL W IW+ +N                                      
Sbjct: 1013 KKGKKELELIVVLCWTIWYSQNLFIFENKREDSQLSIARAEANMDSFKRIKKPFSKILEK 1072

Query: 242  EMRQKKKVGAPEFDG-FKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDAD 301
            + R +K+V  P   G FK+NVDAA  ++   AG+GV+ R+S G+V   A         + 
Sbjct: 1073 QQRNRKQVWNPPPSGWFKINVDAAVNVKDQIAGLGVIIRNSNGEVVAAAIQRSFFQLSST 1132

Query: 302  FAEGLAASFSLRLTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARW 361
              E  A    ++        P ++ETDS  V  L       ++E   ++ D    + +  
Sbjct: 1133 HMEAEAVILGIKSAQRAGFSPMIIETDSQEVVDLTLSKKVRIIETSWIIADIQESIQSSN 1192

Query: 362  LVGGNFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLSL 365
                 +T RE N  AH LA+ A+E      W    P  ++SL
Sbjct: 1193 QFSIQYTPRECNVTAHDLAKKALEFENSVFWEGSFPPQIVSL 1232

BLAST of Lcy03g006960 vs. NCBI nr
Match: TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-38
Identity = 112/395 (28.35%), Postives = 171/395 (43.29%), Query Frame = 0

Query: 9   VRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSGYRL 68
           V +L   SG WN  LIR  F   +   ILS+P    A D+ + WHF+K G Y+V+SGY++
Sbjct: 39  VSELCHPSGAWNSELIRNSFLPDDASLILSLPRLSPAQDDSLCWHFDKRGFYTVRSGYKV 98

Query: 69  GQGPSLAQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLFRRRIDSL 128
                L +   SSS +L   WW   W   +P+K KIFFW+ +   LPT   L RRR+D +
Sbjct: 99  AL--DLKKGIGSSSMQL-SPWWRFLWKCNIPNKCKIFFWKAFNGWLPTFATLARRRVDVV 158

Query: 129 NICVCCGRMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDWF 188
           + C  C    ES  H+ W C    E+        ++ R    D   ++  +   ++   F
Sbjct: 159 DYCQVCNDDSESITHILWSCNSAVEVWRQLLGDDVIQRIVVSDFPSIILSLWRSVDSVVF 218

Query: 189 EEWVVLLWAIWFRR-----------------------------NEMRQKKKVG------A 248
              ++  W +W  R                             NE+  K+ +        
Sbjct: 219 NLLIIGYWRLWTNRNSVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQPSWKT 278

Query: 249 PEFDGFKVNVDAAFYLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFSL 308
           P+   FK+N DA+F L SG+AGVGV+ RD  G      S         +  E  A    +
Sbjct: 279 PKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACLEGI 338

Query: 309 RLTVETATRPFVLETDSMRVSKLLQRDVEEVLELGMLVEDAVRGVPARWLVGGNFTFREG 368
            L ++      ++E+D+  V +LL        ELG ++  ++    +  L+      RE 
Sbjct: 339 HLAIDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYVAVRREA 398

BLAST of Lcy03g006960 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 9.7e-12
Identity = 54/209 (25.84%), Postives = 91/209 (43.54%), Query Frame = 0

Query: 9   VRDLFTASGQ---WNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSGIYSVKSG 68
           + +LF   G    W++  I Q   Q +  +I  I L +    + +IW++  +G Y+V+SG
Sbjct: 75  INNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSG 134

Query: 69  Y-RLGQGPSL---AQSPSSSSSELIHRWWTTCWNMKLPSKIKIFFWRLYLDRLPTMDNLF 128
           Y  L   PS    A +P   S +L     T  WN+ +  K+K F WR     L T + L 
Sbjct: 135 YWLLTHDPSTNIPAINPPHGSIDL----KTRIWNLPIMPKLKHFLWRALSQALATTERLT 194

Query: 129 RRRIDSLNICVCCGRMGESSLHLFWHCKHTREIMWSAGFGAILSRCKADDIKFLLRDVKN 188
            R +     C  C R  ES  H  + C         +    I ++  ++D +  + ++ N
Sbjct: 195 TRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILN 254

Query: 189 ELEWDWFEEW-----VVLLWAIWFRRNEM 206
            ++     ++     V L+W IW  RN +
Sbjct: 255 FVQDTTMSDFHKLLPVWLIWRIWKARNNV 279

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DAR48.2e-5133.17uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A803PAX67.0e-4227.04Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9HE467.0e-4229.04Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37832 PE=4 SV=1[more]
A0A2N9FBQ47.0e-4229.04Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A803P3X43.5e-4128.99Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022150918.11.7e-5033.17uncharacterized protein LOC111018954 [Momordica charantia][more]
TXG66198.11.4e-3928.99hypothetical protein EZV62_007473 [Acer yangbiense][more]
XP_023925698.11.1e-3830.14uncharacterized protein LOC112037116 [Quercus suber][more]
XP_006487889.11.5e-3828.61uncharacterized protein LOC102617714 [Citrus sinensis][more]
TXG50387.13.3e-3828.35hypothetical protein EZV62_022911 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
AT3G09510.19.7e-1225.84Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 218..348
e-value: 4.5E-8
score: 35.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 222..344
e-value: 1.2E-14
score: 54.2
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 247..346
score: 9.804729
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 60..154
e-value: 2.5E-19
score: 69.8
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 23..314
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 23..314
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 221..342
e-value: 3.94926E-11
score: 58.0944
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 220..347

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g006960.1Lcy03g006960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity