Lcy03g005690 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g005690
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr03: 31177766 .. 31178221 (-)
RNA-Seq ExpressionLcy03g005690
SyntenyLcy03g005690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATTAGAATAAGATTGGACATAACAAGACCGTTAAGAAGAGGCTTTATGTTGAAAGCAAATGGTATAGAGGAGAATTGTTGGGTGACAATAAGATATGAAAGACTTCCCGACTTTTGCTTTTTCTATGGTTATGTGGGTCACGTGGCCAAAGAATGCAATGGCAAGAACAGTAAGGAGGAAGGTGATCTTAATACCCTGGAATTTGGAGCATAGTTAAAATTCCAAGGCTTTGTCAGATTTGGGAAAAGATCAGATACACCTTCAAAAGAGGAGGAAGCTAAAGAAAGGAATTGAAAAGGGGATGGAGGTTCTGGAAAAGGGGATGGAGGTTCTGGAAAAGGGGATGAAAAAGGAAAGGAGATTGCAGTGGAGGATGGGAATGTAGGGAATGGACAGGAAGATTCTGTTAGATCGAATACTTTGGCCCTTGACGCGAGATTGCAGACTTAG

mRNA sequence

ATGAGGATTAGAATAAGATTGGACATAACAAGACCGTTAAGAAGAGGCTTTATGTTGAAAGCAAATGGTATAGAGGAGAATTGTTGGGTGACAATAAGATATGAAAGACTTCCCGACTTTTGCTTTTTCTATGGTTATGTGGGTCACGTGGCCAAAGAATGCAATGGCAAGAACAGTAAGGAGGAAGGGGATGGAGGTTCTGGAAAAGGGGATGAAAAAGGAAAGGAGATTGCAGTGGAGGATGGGAATGTAGGGAATGGACAGGAAGATTCTGTTAGATCGAATACTTTGGCCCTTGACGCGAGATTGCAGACTTAG

Coding sequence (CDS)

ATGAGGATTAGAATAAGATTGGACATAACAAGACCGTTAAGAAGAGGCTTTATGTTGAAAGCAAATGGTATAGAGGAGAATTGTTGGGTGACAATAAGATATGAAAGACTTCCCGACTTTTGCTTTTTCTATGGTTATGTGGGTCACGTGGCCAAAGAATGCAATGGCAAGAACAGTAAGGAGGAAGGGGATGGAGGTTCTGGAAAAGGGGATGAAAAAGGAAAGGAGATTGCAGTGGAGGATGGGAATGTAGGGAATGGACAGGAAGATTCTGTTAGATCGAATACTTTGGCCCTTGACGCGAGATTGCAGACTTAG

Protein sequence

MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSKEEGDGGSGKGDEKGKEIAVEDGNVGNGQEDSVRSNTLALDARLQT
Homology
BLAST of Lcy03g005690 vs. ExPASy TrEMBL
Match: A0A6G1E7A7 (Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_035741 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
           +RI+  +D+ +PL RG M++    E NCW   +YE LP+FC+ YG +GHV KEC+GK  K
Sbjct: 175 LRIKALIDVRKPLVRGVMMEDGQGEPNCWCNFKYEFLPNFCYSYGLLGHVEKECDGKVWK 234

Query: 61  EE 63
           E+
Sbjct: 235 ED 236

BLAST of Lcy03g005690 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
           +RIR+ +DIT+PLRRG  +  +G    CW+ I+YERLPDFC+F G +GH + +C+ +   
Sbjct: 171 LRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLA 230

Query: 61  EEGDG-------------GSGKGDEKGKE 77
            + D              GS  G +KG++
Sbjct: 231 AQDDSRATSEYGPWLRFVGSKAGAQKGRK 259

BLAST of Lcy03g005690 vs. ExPASy TrEMBL
Match: A0A1R3G7Z9 (Endonuclease/exonuclease/phosphatase OS=Corchorus olitorius OX=93759 GN=COLO4_36557 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-09
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
           +R++++++I  PL+ GF LK  G  E  WV+ +YERLPDFCF  G +GHVAKEC  K+ +
Sbjct: 172 LRMKVKVNIEDPLKTGFNLKRPGKLEK-WVSFKYERLPDFCFSCGRLGHVAKECLFKDGQ 231

Query: 61  EEGDGGSG 69
           + GD G G
Sbjct: 232 KAGDYGHG 238

BLAST of Lcy03g005690 vs. ExPASy TrEMBL
Match: A0A2N9IQ83 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54171 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-09
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEEN--CWVTIRYERLPDFCFFYGYVGHVAKECN 56
           MR+RIRL++T PL RG M+K   +EEN  CWV  RYERLP+FC++ GY+ H  K+C+
Sbjct: 127 MRVRIRLNVTAPLCRGRMIK---LEENKKCWVAFRYERLPNFCYWCGYLDHSEKDCD 180

BLAST of Lcy03g005690 vs. ExPASy TrEMBL
Match: A0A2N9EP20 (zf-CCHC_4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8469 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-09
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MRIRIRLDITRPLRRGFMLKANGIEEN--CWVTIRYERLPDFCFFYGYVGHVAKECN 56
          MR+RIRL++T PL RG M+K   +EEN  CWV  RYERLP+FC++ GY+ H  K+C+
Sbjct: 32 MRVRIRLNVTAPLCRGRMIK---LEENKKCWVAFRYERLPNFCYWCGYLDHSEKDCD 85

BLAST of Lcy03g005690 vs. NCBI nr
Match: KAF0920597.1 (hypothetical protein E2562_035741 [Oryza meyeriana var. granulata])

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
           +RI+  +D+ +PL RG M++    E NCW   +YE LP+FC+ YG +GHV KEC+GK  K
Sbjct: 175 LRIKALIDVRKPLVRGVMMEDGQGEPNCWCNFKYEFLPNFCYSYGLLGHVEKECDGKVWK 234

Query: 61  EE 63
           E+
Sbjct: 235 ED 236

BLAST of Lcy03g005690 vs. NCBI nr
Match: KAF7151487.1 (hypothetical protein RHSIM_Rhsim02G0110700 [Rhododendron simsii])

HSP 1 Score: 70.9 bits (172), Expect = 7.6e-09
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 1  MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
          +R+R+ +DIT+PL+RGF L+  G EE+ WV  RYERL DFC+  G VGH   EC  K+  
Sbjct: 4  IRVRVWVDITKPLKRGFFLRRPG-EEDLWVKFRYERLSDFCYSCGRVGHNFNECKNKDES 63

Query: 61 EE 63
          +E
Sbjct: 64 KE 64

BLAST of Lcy03g005690 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-09
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
           +RIR+ +DIT+PLRRG  +  +G    CW+ I+YERLPDFC+F G +GH + +C+ +   
Sbjct: 171 LRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLA 230

Query: 61  EEGDG-------------GSGKGDEKGKE 77
            + D              GS  G +KG++
Sbjct: 231 AQDDSRATSEYGPWLRFVGSKAGAQKGRK 259

BLAST of Lcy03g005690 vs. NCBI nr
Match: OMO54212.1 (Endonuclease/exonuclease/phosphatase [Corchorus olitorius])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNSK 60
           +R++++++I  PL+ GF LK  G  E  WV+ +YERLPDFCF  G +GHVAKEC  K+ +
Sbjct: 172 LRMKVKVNIEDPLKTGFNLKRPGKLEK-WVSFKYERLPDFCFSCGRLGHVAKECLFKDGQ 231

Query: 61  EEGDGGSG 69
           + GD G G
Sbjct: 232 KAGDYGHG 238

BLAST of Lcy03g005690 vs. NCBI nr
Match: KAG5544352.1 (hypothetical protein RHGRI_016938 [Rhododendron griersonianum])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 1   MRIRIRLDITRPLRRGFMLKANGIEENCWVTIRYERLPDFCFFYGYVGHVAKECNGKNS 60
           MR+RI +DI++PL++GF L+    E++ WV  RYERL DFC+  G VGHVA EC  K S
Sbjct: 162 MRVRIWVDISKPLKKGFFLR-KAKEKDSWVRFRYERLSDFCYGCGMVGHVANECKDKRS 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6G1E7A71.3e-0948.39Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_035... [more]
A0A6J1DU554.8e-0938.20uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1R3G7Z96.3e-0950.00Endonuclease/exonuclease/phosphatase OS=Corchorus olitorius OX=93759 GN=COLO4_36... [more]
A0A2N9IQ836.3e-0956.14Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54171 PE=4 SV=1[more]
A0A2N9EP206.3e-0956.14zf-CCHC_4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8469... [more]
Match NameE-valueIdentityDescription
KAF0920597.12.6e-0948.39hypothetical protein E2562_035741 [Oryza meyeriana var. granulata][more]
KAF7151487.17.6e-0951.61hypothetical protein RHSIM_Rhsim02G0110700 [Rhododendron simsii][more]
XP_022156185.19.9e-0938.20uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
OMO54212.11.3e-0850.00Endonuclease/exonuclease/phosphatase [Corchorus olitorius][more]
KAG5544352.11.3e-0854.24hypothetical protein RHGRI_016938 [Rhododendron griersonianum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 7..55
e-value: 5.0E-13
score: 48.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g005690.1Lcy03g005690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0004518 nuclease activity