Lcy03g002340 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g002340
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr03: 8425579 .. 8427616 (+)
RNA-Seq ExpressionLcy03g002340
SyntenyLcy03g002340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAACTATGGAAGATCTCTGTTCCTCTTAGATTCTTAGTAAATCGCAACGTTTTTCCTCCGCTTACCTTCTCTCTCTCGAAGACTTCGAATTGTTTCTCGTTTCCTCATGGCCTCCATACTCAATCCCTCTCTTCCTCGTCGCCTCCGCCCTCACTCTCTTCGTTTTCGTTGCTTCCTAATATTATTGAATTGTTCTCTAACAAGCCTTCCGACCATGACCTTTTGGTGAGAAGTATTATGCAAAGGAAGGTCACGGAGGTGCGACATGAACTGATTCAGAACGCCGAGGATTCTGATAAGATCGTGAAAAAATTGGAAGATAGTGAAGACTTCCTCTTACGGAAACACGCTGACAGTTCTGCTTTTATCGAGTTGCTGAAGCAGTTGGCTTCACTGCCTCACTTAGCACTGGAGGTGAGTTTAACTCTACATACTTGAAGGAAATTGCTTCATATGTAGCTTCTGAATTGTATGCTTATGTGGGGATTGCTTTCATTATATTGCAGTCTGCATTAAATTGTTAATTGTTTTTGTTCTGTCTTACATGGGTTTTTTGTATTCTTCTTCTTTTGTACTACATATGGATGTCAAGAACATTTGGATGATATTTCGAGTGAAATGAAATTAATGGGATTGTTGGAAATGATTAGTATGTTGTAGCTGACTCTGAGTTTAGTTAGTCTTAGTCATATGATTCAGAAAGGTTGAAATTTCATTGAAGTAGAATTATTGTTTTTGATGCTTAATATTATACAATGTTATGACATTAAGTTGTATTGTCGAATCCCACTTGAAATTAGAAGTTTTGATAGGCATTCTATGTTCTAAATAACTTGGTACTCATGTACAAGGCCATGATAAATAATTTGACGACACTAAATTGCTGATCAGATTATTCTTTTGCACTTAGGTGTTTAATTGGAGAAGAAGGCAAGAGGGTTCCTTTCCTTTAACTGCAGAGGAATATGCTAAGGGAATTACAGTTGCAGGTCGATCTAAAAATGTTGACCTTGCAATTGAGTTGTTCACTGAGGCTTCTAATAAAAGGATCAAGACAACCTCTACTTATAATGCACTGATGGGAGCTTACATGTTTAATGGCTTGGCTGACAAATGCCACTCATTGTTTCGGGATCTTAAGAGGGAGGCAAATTGTGTTCCTACTATTGTAACATATAACATCCTAATATCAGTATTTGGTCGCTTGATATTAGTTGATCACATGGAGGCAACCATGCGGGAGATACATGATTTGGATCTCTCCCCGAACGTGAGCACATACAATCATCTAATAGCTGGGTATGTTACTTCATGGATGTGGGATAAAATGGAGCAAACCTTTTTGAAGATGAAGGCGAATTCAGTAAAGCCCAACACTGAAACTTTTTCGTTAATGCTCCGTGGGTATGCACATTCTGACAATCTTGACAAGATGGAACAGATATATGACTTGTTAAAAGATCATGACAATGACAAGAATTTCCCTCTTATTAGAGCTATGATATGTGCATACTGTAGGAGTTCTATAGCAGATAAAGTGAAAAAGATTGAGGCTTTGTTGAAGCTTATTCCTGAAGAAGAATATAGACCATGGTTGAATGTCTTATTGATAAGAGTCTACGCTCAAGAAGATTGGTTAGAGAGAATGGAGAATTCAATAAATGAGGCATTTGAGTATGGTACTTCAATAACTACCATCCATGTAATGAAATCCATTATTGGCACCTATTTTCGGTGTAATGCATTGGACAAACTAACAAACTTTGTAAGCCGTGCTGAATCTTCAGGTTGGAGAATCTGTCGGTCTTTATATCATTGTAAAATGGTTATGTTTGGATCACAAAAGCGATTTGAAGAAATGGAGTGTGTTCTTGATGAAATGAAAAGTATCAACTTGGATTGGACAAAAAAAACATTTTGGATTTTGTATAAAGCCTACTCAATAAGTGGTTGCAGGTACAAGCTTGACCAAGTGGTATGCTATATGTGCAAGCATGGGTATGGGATCCCATTTGATTCTTGTCCATCTTGA

mRNA sequence

ATGAAGCAACTATGGAAGATCTCTGTTCCTCTTAGATTCTTAGTAAATCGCAACGTTTTTCCTCCGCTTACCTTCTCTCTCTCGAAGACTTCGAATTGTTTCTCGTTTCCTCATGGCCTCCATACTCAATCCCTCTCTTCCTCGTCGCCTCCGCCCTCACTCTCTTCGTTTTCGTTGCTTCCTAATATTATTGAATTGTTCTCTAACAAGCCTTCCGACCATGACCTTTTGGTGAGAAGTATTATGCAAAGGAAGGTCACGGAGGTGCGACATGAACTGATTCAGAACGCCGAGGATTCTGATAAGATCGTGAAAAAATTGGAAGATAGTGAAGACTTCCTCTTACGGAAACACGCTGACAGTTCTGCTTTTATCGAGTTGCTGAAGCAGTTGGCTTCACTGCCTCACTTAGCACTGGAGGTGTTTAATTGGAGAAGAAGGCAAGAGGGTTCCTTTCCTTTAACTGCAGAGGAATATGCTAAGGGAATTACAGTTGCAGGTCGATCTAAAAATGTTGACCTTGCAATTGAGTTGTTCACTGAGGCTTCTAATAAAAGGATCAAGACAACCTCTACTTATAATGCACTGATGGGAGCTTACATGTTTAATGGCTTGGCTGACAAATGCCACTCATTGTTTCGGGATCTTAAGAGGGAGGCAAATTGTGTTCCTACTATTGTAACATATAACATCCTAATATCAGTATTTGGTCGCTTGATATTAGTTGATCACATGGAGGCAACCATGCGGGAGATACATGATTTGGATCTCTCCCCGAACGTGAGCACATACAATCATCTAATAGCTGGGTATGTTACTTCATGGATGTGGGATAAAATGGAGCAAACCTTTTTGAAGATGAAGGCGAATTCAGTAAAGCCCAACACTGAAACTTTTTCGTTAATGCTCCGTGGGTATGCACATTCTGACAATCTTGACAAGATGGAACAGATATATGACTTGTTAAAAGATCATGACAATGACAAGAATTTCCCTCTTATTAGAGCTATGATATGTGCATACTGTAGGAGTTCTATAGCAGATAAAGTGAAAAAGATTGAGGCTTTGTTGAAGCTTATTCCTGAAGAAGAATATAGACCATGGTTGAATGTCTTATTGATAAGAGTCTACGCTCAAGAAGATTGGTTAGAGAGAATGGAGAATTCAATAAATGAGGCATTTGAGTATGGTACTTCAATAACTACCATCCATGTAATGAAATCCATTATTGGCACCTATTTTCGGTGTAATGCATTGGACAAACTAACAAACTTTGTAAGCCGTGCTGAATCTTCAGGTTGGAGAATCTGTCGGTCTTTATATCATTGTAAAATGGTTATGTTTGGATCACAAAAGCGATTTGAAGAAATGGAGTGTGTTCTTGATGAAATGAAAAGTATCAACTTGGATTGGACAAAAAAAACATTTTGGATTTTGTATAAAGCCTACTCAATAAGTGGTTGCAGGTACAAGCTTGACCAAGTGGTATGCTATATGTGCAAGCATGGGTATGGGATCCCATTTGATTCTTGTCCATCTTGA

Coding sequence (CDS)

ATGAAGCAACTATGGAAGATCTCTGTTCCTCTTAGATTCTTAGTAAATCGCAACGTTTTTCCTCCGCTTACCTTCTCTCTCTCGAAGACTTCGAATTGTTTCTCGTTTCCTCATGGCCTCCATACTCAATCCCTCTCTTCCTCGTCGCCTCCGCCCTCACTCTCTTCGTTTTCGTTGCTTCCTAATATTATTGAATTGTTCTCTAACAAGCCTTCCGACCATGACCTTTTGGTGAGAAGTATTATGCAAAGGAAGGTCACGGAGGTGCGACATGAACTGATTCAGAACGCCGAGGATTCTGATAAGATCGTGAAAAAATTGGAAGATAGTGAAGACTTCCTCTTACGGAAACACGCTGACAGTTCTGCTTTTATCGAGTTGCTGAAGCAGTTGGCTTCACTGCCTCACTTAGCACTGGAGGTGTTTAATTGGAGAAGAAGGCAAGAGGGTTCCTTTCCTTTAACTGCAGAGGAATATGCTAAGGGAATTACAGTTGCAGGTCGATCTAAAAATGTTGACCTTGCAATTGAGTTGTTCACTGAGGCTTCTAATAAAAGGATCAAGACAACCTCTACTTATAATGCACTGATGGGAGCTTACATGTTTAATGGCTTGGCTGACAAATGCCACTCATTGTTTCGGGATCTTAAGAGGGAGGCAAATTGTGTTCCTACTATTGTAACATATAACATCCTAATATCAGTATTTGGTCGCTTGATATTAGTTGATCACATGGAGGCAACCATGCGGGAGATACATGATTTGGATCTCTCCCCGAACGTGAGCACATACAATCATCTAATAGCTGGGTATGTTACTTCATGGATGTGGGATAAAATGGAGCAAACCTTTTTGAAGATGAAGGCGAATTCAGTAAAGCCCAACACTGAAACTTTTTCGTTAATGCTCCGTGGGTATGCACATTCTGACAATCTTGACAAGATGGAACAGATATATGACTTGTTAAAAGATCATGACAATGACAAGAATTTCCCTCTTATTAGAGCTATGATATGTGCATACTGTAGGAGTTCTATAGCAGATAAAGTGAAAAAGATTGAGGCTTTGTTGAAGCTTATTCCTGAAGAAGAATATAGACCATGGTTGAATGTCTTATTGATAAGAGTCTACGCTCAAGAAGATTGGTTAGAGAGAATGGAGAATTCAATAAATGAGGCATTTGAGTATGGTACTTCAATAACTACCATCCATGTAATGAAATCCATTATTGGCACCTATTTTCGGTGTAATGCATTGGACAAACTAACAAACTTTGTAAGCCGTGCTGAATCTTCAGGTTGGAGAATCTGTCGGTCTTTATATCATTGTAAAATGGTTATGTTTGGATCACAAAAGCGATTTGAAGAAATGGAGTGTGTTCTTGATGAAATGAAAAGTATCAACTTGGATTGGACAAAAAAAACATTTTGGATTTTGTATAAAGCCTACTCAATAAGTGGTTGCAGGTACAAGCTTGACCAAGTGGTATGCTATATGTGCAAGCATGGGTATGGGATCCCATTTGATTCTTGTCCATCTTGA

Protein sequence

MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLLPNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLILVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALDKLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILYKAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS
Homology
BLAST of Lcy03g002340 vs. ExPASy Swiss-Prot
Match: O49343 (Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana OX=3702 GN=At2g30780 PE=2 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 2.4e-127
Identity = 222/434 (51.15%), Postives = 309/434 (71.20%), Query Frame = 0

Query: 71  PSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQ 130
           P+ H  LV     ++V+ ++ EL+      +K    L+    +L R + D +  +EL+ Q
Sbjct: 23  PAHHTDLV-----QRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQ 82

Query: 131 LASLPHLALEVFNWRRRQEG-SFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIKT 190
           L    +LAL+V  WRR Q+    PLT+EEYAKGI +AGR+++++LA+ LF EA+ KR++T
Sbjct: 83  LFPRHYLALQVLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQT 142

Query: 191 TSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLILVDHMEATM 250
            S YN+LM  YM+NGLA++C SLF+D +R+ +C PT+VTYNIL+SV+GRL++V +MEA  
Sbjct: 143 ASVYNSLMSVYMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAF 202

Query: 251 REIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHS 310
            E+  + L PN  TYN LIAGY+T+W WDKME TF +MK   V+P+T+T+ LMLRGYA+S
Sbjct: 203 EELQKVKLPPNSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANS 262

Query: 311 DNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRPWL 370
            NL++ME++Y+++KD     + PL+RAMICAYC+ ++ D+V+KIE LL L+  EEY PWL
Sbjct: 263 GNLNRMEEMYEVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWL 322

Query: 371 NVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALDKLTNFVSRA 430
           NVLLIR+YAQED++E ME+ INEAFE  T +    +M++II  YFRCN +D L NFV RA
Sbjct: 323 NVLLIRLYAQEDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRA 382

Query: 431 ESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILYKAYSISGCR 490
           ES+GW++CRSLYHCK++M+GSQKRFEEME V++EM   N     KTF I+ KAY   G  
Sbjct: 383 ESAGWKLCRSLYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGME 442

Query: 491 YKLDQVVCYMCKHG 504
              ++V   M K G
Sbjct: 443 SDAEKVKGKMLKRG 451

BLAST of Lcy03g002340 vs. ExPASy Swiss-Prot
Match: Q9ZU88 (Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana OX=3702 GN=At2g48000 PE=2 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 6.6e-109
Identity = 205/423 (48.46%), Postives = 289/423 (68.32%), Query Frame = 0

Query: 89  VRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLASLPHLALEVFNWRRRQ 148
           ++++L++   DS K+   LE       R     +AF+ELL+QL   P L+  VF+WRR +
Sbjct: 55  LKNQLLRFRNDSGKVASVLE-------RNKIQGAAFVELLRQLRPWPVLSQLVFDWRRNK 114

Query: 149 E--GSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIKTTSTYNALMGAYMFNGLA 208
                 P+TA+EYAKGIT++GR KNVDLA+ LF E++N   KTTS YNALMGAY+ NGL+
Sbjct: 115 ALCDGLPMTADEYAKGITISGRLKNVDLALSLFHESAN---KTTSVYNALMGAYLCNGLS 174

Query: 209 DKCHSLFRDLKRE----ANCVPTIVTYNILISVFGRLILVDHMEATMREIHDLDLSPNVS 268
             C  LF D   +    ++  P++ TYNILIS++GRLI+V+ ME+   ++  L++ P+ S
Sbjct: 175 HHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFLQLQQLNILPDSS 234

Query: 269 TYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHSDNLDKMEQIYDLL 328
           TYN+LIAGY+ +W WDKME TF  MK   VKP   T+ LMLRGYA+S NL +ME +Y  +
Sbjct: 235 TYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYANSGNLLRMEDMYQAV 294

Query: 329 KDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRPWLNVLLIRVYAQEDW 388
           K H +     LI +MICAY RS   D+++KI+ L KLIP++ Y+PWL +LL++VYA++D 
Sbjct: 295 KRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKPWLYLLLMQVYAKDDN 354

Query: 389 LERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALDKLTNFVSRAESSGWRICRSLYH 448
           L  MEN I++A   G  I T  +M+SI+ +YFRCNA+DKL  FV RA S+GW++ RS++H
Sbjct: 355 LHAMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLAKFVQRANSAGWKMSRSMFH 414

Query: 449 CKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILYKAYSIS-GCRYKLDQVVCYMCK 505
             M+M+GSQKRF+EME VL EM+S  +  +KKT  IL + Y+ + G  +K++QV   M K
Sbjct: 415 GLMIMYGSQKRFKEMENVLSEMESFKISRSKKTLCILLRVYAATHGQEHKVNQVAGMMLK 467

BLAST of Lcy03g002340 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-24
Identity = 94/336 (27.98%), Postives = 166/336 (49.40%), Query Frame = 0

Query: 89  VRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLASLPHLALEVFNWRRRQ 148
           VR  L + A   +++V  L+     +  +H     F EL ++ A L    L+VF W ++Q
Sbjct: 61  VRSLLRRTAGGKERLVPVLDRHVRVVRTEHC-FLLFEELGRRDAWLQ--CLDVFRWMQKQ 120

Query: 149 EGSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIK-TTSTYNALMGAYMFNGLAD 208
              +      Y+K I+V GR   + +A+ LF++  N   K  TS YN+L+GA++ +   D
Sbjct: 121 RW-YVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHS--RD 180

Query: 209 KCHSL------FRDLKREANCVPTIVTYNILISVFGRLILVDHMEATMREIHDLDLSPNV 268
           K  +L      F  +K    C PTIVTYNIL+  F +      ++   +++ +  +SP+V
Sbjct: 181 KTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDV 240

Query: 269 STYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHSDNLDKMEQIYDL 328
            TYN ++  Y  + M  +ME   ++MK+   +P+  TF++++  Y      DKMEQ++  
Sbjct: 241 YTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKS 300

Query: 329 LKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRP--WLNVLLIRVYAQ 388
           L         P   +MI  Y R+ + +K    E++++ + E  ++P       LI +YA 
Sbjct: 301 LLRSKERPTHPTFNSMITNYGRARLREKA---ESVVEKMEELGFKPNYVTQECLIIMYAH 360

Query: 389 EDWLERMENSINEAFEYGTSITTIHV--MKSIIGTY 414
            D + +     +E     TS T +H+  + S++  Y
Sbjct: 361 CDCVSKARQVFDELV---TSQTKVHLSSLNSMLEAY 384

BLAST of Lcy03g002340 vs. ExPASy Swiss-Prot
Match: A3ABE1 (Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0750400 PE=3 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 6.6e-24
Identity = 75/263 (28.52%), Postives = 131/263 (49.81%), Query Frame = 0

Query: 139 LEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIK-TTSTYNALM 198
           LEVF W ++Q   +      Y+K I+V GR   + +A+ LF++  N   +  TS YN+L+
Sbjct: 105 LEVFRWMQKQRW-YVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLI 164

Query: 199 GAYMFNGLADKCHSL------FRDLKREANCVPTIVTYNILISVFGRLILVDHMEATMRE 258
           G ++ +   DK  +L      F  +K    C P IVTYNIL+  F +      ++   ++
Sbjct: 165 GTHLHS--RDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKD 224

Query: 259 IHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHSDN 318
           + +  +SP++ TYN ++  Y  + M  +ME   ++MK+N  +P+  TF++++  Y     
Sbjct: 225 LDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQA 284

Query: 319 LDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRP--WL 378
            DKMEQ++  L         P   +MI  Y ++ + +K    E +L  + E  ++P    
Sbjct: 285 FDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKA---ECVLDKMTEMGFKPNYVT 344

Query: 379 NVLLIRVYAQEDWLERMENSINE 393
              LI +YA  D + R     +E
Sbjct: 345 QECLIMMYAYCDCVSRARQIFDE 361

BLAST of Lcy03g002340 vs. ExPASy Swiss-Prot
Match: Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-22
Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 0

Query: 73  DHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLA 132
           ++ +LVRS+M R     R  L++     DK VK +     FLL        F EL K   
Sbjct: 66  ENRVLVRSLMSR--ISDREPLVKTL---DKYVKVVRCDHCFLL--------FEELGKSDK 125

Query: 133 SLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIK-TTS 192
            L    LEVF W ++Q    P     Y+K I+V G+     +A+ LF+E  N   +   S
Sbjct: 126 WLQ--CLEVFRWMQKQRWYIPDNG-VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDAS 185

Query: 193 TYNALMGAYMFN----GLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLILVDHMEA 252
            YNAL+ A++         +K       +K    C P +VTYNIL+  F +   VD + A
Sbjct: 186 VYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNA 245

Query: 253 TMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYA 312
             +++    +SP+V T+N ++  Y  + M  +ME    +M++N  KP+  TF++++  Y 
Sbjct: 246 LFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYG 305

Query: 313 HSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRP 368
                +KMEQ +  L         P   +MI  Y ++ + DK    E + K + +  Y P
Sbjct: 306 KKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKA---EWVFKKMNDMNYIP 346

BLAST of Lcy03g002340 vs. ExPASy TrEMBL
Match: A0A6J1E6A9 (pentatricopeptide repeat-containing protein At2g30780 OS=Cucurbita moschata OX=3662 GN=LOC111431181 PE=3 SV=1)

HSP 1 Score: 903.7 bits (2334), Expect = 3.6e-259
Identity = 441/513 (85.96%), Postives = 477/513 (92.98%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWK SV  RFLVNRN+F P +FSL+  SN F FPHGLHTQS SSSSP PS+SSFSLL
Sbjct: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHFIFPHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSD DLLVRSIMQRKVTEV HELIQNAEDSDKIVK LED+E FLLR+HAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSIMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           SSAF+ELLKQL S PHLALEVFNWRRRQEGSFPLTAEEYAK IT+AGRSKNVDLA+ELFT
Sbjct: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASNKR+KTTS YNALMGAYM+NGLADKCHSLFRDLKR+ANCVPTIVTYNIL+SVFGRL+
Sbjct: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT+REIHDLDLSPNVSTYNHLIAGYVT+WMWDKMEQTFLKMKA+SVKPNTET  
Sbjct: 241 LVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTETLL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++++L KDH +DKNFPLIR MICAYCRS+IADKV KIEALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMHELSKDHVDDKNFPLIRTMICAYCRSTIADKVTKIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           P+EEYRPWLNVLLI+VYAQEDWLERMENSINEAFE+GTS+ T+HVM+SI  +YFRCNA+D
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFEHGTSVNTLHVMRSISASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFVSRAE SGWRICRSLYHCKMVMF S+KRFEEME VLDEMK+INLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS 514
           KAYS+SGCRYK+DQV CYMCK GYGIP D  PS
Sbjct: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 513

BLAST of Lcy03g002340 vs. ExPASy TrEMBL
Match: A0A6J1L8L9 (pentatricopeptide repeat-containing protein At2g30780 OS=Cucurbita maxima OX=3661 GN=LOC111500290 PE=3 SV=1)

HSP 1 Score: 886.3 bits (2289), Expect = 6.0e-254
Identity = 431/509 (84.68%), Postives = 472/509 (92.73%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWK SV  R LVNRN+F P +FSL+  SN   F HGLHTQS SSSSP PS+SSFSLL
Sbjct: 1   MKQLWKFSVRRRILVNRNIFAPFSFSLANNSNYDMFHHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSD DLLVRSIMQRKVTEV HELIQNAEDSDKIVK LED+E FLLR+HAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSIMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           SS F+ELLKQL S PHLALEVFNWRRRQEGSFPLTAEEYAK ITVAGRSKNVDLA+ELFT
Sbjct: 121 SSTFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITVAGRSKNVDLAVELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           +ASNKR+KTTS YNALMGAYM+NGLADKCHSLFRDLK +ANCVPTIVTYNIL+SVFGRL+
Sbjct: 181 KASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKTDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT+REIHDLDLSPNVSTYNHLIAGYVT+WMWDKMEQTFLKMKA+SVKPNT+TF 
Sbjct: 241 LVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTDTFL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++++LLKDH ++KNFPLIR MICAYCRS+IADKV KIEALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMHELLKDHVDEKNFPLIRTMICAYCRSTIADKVTKIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           P+EEYRPWLNVLLI+VYAQEDWLERME+SINEAFE+GTS+ T+HVM+SII +Y+RCNA+D
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDWLERMESSINEAFEHGTSVNTLHVMRSIIASYYRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFVSRAE SGWRICRSLYHCKMVMF S+KRFEEME VLDEMK++NLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNMNLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFD 510
           KAYS+S CRYK+DQV CYMCK GYGIP D
Sbjct: 481 KAYSLSDCRYKVDQVACYMCKLGYGIPSD 509

BLAST of Lcy03g002340 vs. ExPASy TrEMBL
Match: A0A6J1CXA6 (pentatricopeptide repeat-containing protein At2g30780 OS=Momordica charantia OX=3673 GN=LOC111015285 PE=3 SV=1)

HSP 1 Score: 883.6 bits (2282), Expect = 3.9e-253
Identity = 435/513 (84.80%), Postives = 475/513 (92.59%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWKISVP RFLV RN+F P TF L++TSN +    GLHTQ+ +SS  PPSLSSFSLL
Sbjct: 1   MKQLWKISVPRRFLVKRNIFAPFTFPLTRTSN-YLILRGLHTQTHTSSLLPPSLSSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSDHDLLVR  MQRK+TEVRHELIQNA+DSDKIVKKLED ED LLR+HAD
Sbjct: 61  PNIIELFSNKPSDHDLLVRMNMQRKLTEVRHELIQNADDSDKIVKKLEDCEDLLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
            SAF+ELLK+L S PHLALEVFNWRRRQEGSFP+TAEEYAKGITVAGRSKNVDLAIELFT
Sbjct: 121 GSAFVELLKKLDSRPHLALEVFNWRRRQEGSFPMTAEEYAKGITVAGRSKNVDLAIELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASN+RIKTTSTYNALMGAYMFNGL DKCHSLFRDLKREANCVPTIVTYNILISVFGRL+
Sbjct: 181 EASNRRIKTTSTYNALMGAYMFNGLVDKCHSLFRDLKREANCVPTIVTYNILISVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT++EI DL LSPNVSTYN+LIAGYVT+WMWD+MEQTFL MKA+SVKPNTETFS
Sbjct: 241 LVDHMEATLQEIRDLKLSPNVSTYNNLIAGYVTAWMWDRMEQTFLTMKASSVKPNTETFS 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHS NL+KME++Y+L++ H ++KNFPLIRAMICAYC SSIAD+VK+IEALLKLI
Sbjct: 301 LMLRGYAHSGNLEKMEEMYELVRGHVSNKNFPLIRAMICAYCWSSIADRVKRIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           PEEEYRPWLNVLLIRVYAQEDWLE ME+SINEAFE+GTS+TT+HVM+SII +YFRCNA+D
Sbjct: 361 PEEEYRPWLNVLLIRVYAQEDWLEGMESSINEAFEHGTSVTTVHVMRSIIASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFV RAE SGWRICRSLYHCKMVMF SQKR EEMECVL+EMKSINLDWTKKTFWILY
Sbjct: 421 KLTNFVKRAECSGWRICRSLYHCKMVMFASQKRLEEMECVLNEMKSINLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS 514
           KAYS+SGCRYK+DQVV  MCK GYGIP DSCPS
Sbjct: 481 KAYSVSGCRYKVDQVVGLMCKLGYGIPLDSCPS 512

BLAST of Lcy03g002340 vs. ExPASy TrEMBL
Match: A0A5D3D7D2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00940 PE=3 SV=1)

HSP 1 Score: 815.5 bits (2105), Expect = 1.3e-232
Identity = 402/515 (78.06%), Postives = 453/515 (87.96%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLW  SVP R LVNR +F P  FSL  T+ CF  PHGLHTQS SSSSPPPS+SSFSLL
Sbjct: 135 MKQLWMFSVPRRLLVNRIIFAPSAFSLRNTNYCF-LPHGLHTQSPSSSSPPPSISSFSLL 194

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
            N+IELFSNKPSDH +L RSIMQ+KV EV HELIQNAE+SDKI+K LEDSED LLRKHAD
Sbjct: 195 TNLIELFSNKPSDHAILERSIMQKKVLEVSHELIQNAENSDKIMKILEDSEDLLLRKHAD 254

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           S AF+ELLKQL S P+LALEV NWRRRQ GSFPLTAEEYAKGI VAGRSK++DLA+ LFT
Sbjct: 255 SLAFVELLKQLGSQPYLALEVLNWRRRQGGSFPLTAEEYAKGIAVAGRSKHIDLAVGLFT 314

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASNKR+KTTSTYNALMG YM+NGLADKC+SLFRDLKR+A+CVP IVTYNIL+S+FGRL+
Sbjct: 315 EASNKRVKTTSTYNALMGVYMYNGLADKCNSLFRDLKRDADCVPNIVTYNILLSLFGRLM 374

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEATMREIHDL+LSPNV+TYNHL+AGY+T+WMW++MEQTF+KMK++S+KPNTETF 
Sbjct: 375 LVDHMEATMREIHDLNLSPNVNTYNHLLAGYITAWMWNRMEQTFMKMKSSSIKPNTETFL 434

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++Y LLKDH N+  FPLIR MI AYCRSSI DKV KI+ALLKLI
Sbjct: 435 LMLRGYAHSDNLEKMEEMYHLLKDHVNENKFPLIRIMIYAYCRSSITDKVHKIDALLKLI 494

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           PEEEYR WLN  LI +YAQ D LERME+SINEAFE+GTS+ T  +M+ II +YFRCNA+D
Sbjct: 495 PEEEYRAWLNCKLISIYAQADCLERMEHSINEAFEHGTSVYTARLMRCIIASYFRCNAVD 554

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KL NFVSRAES+GWRICRSLYHCKMVMF SQ RFEEMECVLDEMK+IN+DWTKKTF+ILY
Sbjct: 555 KLINFVSRAESAGWRICRSLYHCKMVMFASQNRFEEMECVLDEMKNINMDWTKKTFYILY 614

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIP--FDSCPS 514
           KAYS SGCRYK +QVV  MCK GYG+P   DS PS
Sbjct: 615 KAYSTSGCRYKANQVVGRMCKLGYGVPVDLDSSPS 648

BLAST of Lcy03g002340 vs. ExPASy TrEMBL
Match: A0A1S3BKY2 (pentatricopeptide repeat-containing protein At2g30780 OS=Cucumis melo OX=3656 GN=LOC103490967 PE=3 SV=1)

HSP 1 Score: 810.8 bits (2093), Expect = 3.2e-231
Identity = 400/515 (77.67%), Postives = 451/515 (87.57%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLW  SVP R LVNR +F P  FSL  T+ CF  PHGLHTQS SSSSPPPS+SSFSLL
Sbjct: 1   MKQLWMFSVPRRLLVNRIIFAPSAFSLRNTNYCF-LPHGLHTQSPSSSSPPPSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
            N+IELFSNKPSDH +L RSIMQ+KV EV HELIQNAE+SDKI+K L+DSED LLRKHAD
Sbjct: 61  TNLIELFSNKPSDHAILERSIMQKKVLEVSHELIQNAENSDKIMKILKDSEDLLLRKHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
             AF+ELLKQL S P+LALEV NWRRRQ GSFPLTAEEYAKGI VAGRSK++DLA+ LFT
Sbjct: 121 GLAFVELLKQLGSQPYLALEVLNWRRRQGGSFPLTAEEYAKGIAVAGRSKHIDLAVGLFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASNKR+K TSTYNALMG YM+NGLADKC+SLFRDLKR+A+CVP IVTYNIL+S+FGRL+
Sbjct: 181 EASNKRVKATSTYNALMGVYMYNGLADKCNSLFRDLKRDADCVPNIVTYNILLSLFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEATMREIHDL+LSPNV+TYNHL+AGY+T+WMW++MEQTF+KMK++S+KPNTETF 
Sbjct: 241 LVDHMEATMREIHDLNLSPNVNTYNHLLAGYITAWMWNRMEQTFMKMKSSSIKPNTETFL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++Y LLKDH N+  FPLIR MI AYCRSSI DKV KI+ALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMYHLLKDHVNENKFPLIRIMIYAYCRSSITDKVHKIDALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           PEEEYR WLN  LI +YAQ D LERME+SINEAFE+GTSI T  +M+ II +YFRCNA+D
Sbjct: 361 PEEEYRAWLNCKLISIYAQADCLERMEHSINEAFEHGTSIYTARLMRCIIASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KL NFVSRAES+GWRICRSLYHCKMVMF SQ RFEEMECVLDEMK+IN+DWTKKTF+ILY
Sbjct: 421 KLINFVSRAESAGWRICRSLYHCKMVMFASQNRFEEMECVLDEMKNINMDWTKKTFYILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIP--FDSCPS 514
           KAYS SGCRYK +QVV  MCK GYG+P   DS PS
Sbjct: 481 KAYSTSGCRYKANQVVGRMCKLGYGVPVDLDSSPS 514

BLAST of Lcy03g002340 vs. NCBI nr
Match: XP_022923507.1 (pentatricopeptide repeat-containing protein At2g30780 [Cucurbita moschata] >XP_022923508.1 pentatricopeptide repeat-containing protein At2g30780 [Cucurbita moschata])

HSP 1 Score: 903.7 bits (2334), Expect = 7.4e-259
Identity = 441/513 (85.96%), Postives = 477/513 (92.98%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWK SV  RFLVNRN+F P +FSL+  SN F FPHGLHTQS SSSSP PS+SSFSLL
Sbjct: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHFIFPHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSD DLLVRSIMQRKVTEV HELIQNAEDSDKIVK LED+E FLLR+HAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSIMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           SSAF+ELLKQL S PHLALEVFNWRRRQEGSFPLTAEEYAK IT+AGRSKNVDLA+ELFT
Sbjct: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASNKR+KTTS YNALMGAYM+NGLADKCHSLFRDLKR+ANCVPTIVTYNIL+SVFGRL+
Sbjct: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT+REIHDLDLSPNVSTYNHLIAGYVT+WMWDKMEQTFLKMKA+SVKPNTET  
Sbjct: 241 LVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTETLL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++++L KDH +DKNFPLIR MICAYCRS+IADKV KIEALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMHELSKDHVDDKNFPLIRTMICAYCRSTIADKVTKIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           P+EEYRPWLNVLLI+VYAQEDWLERMENSINEAFE+GTS+ T+HVM+SI  +YFRCNA+D
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFEHGTSVNTLHVMRSISASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFVSRAE SGWRICRSLYHCKMVMF S+KRFEEME VLDEMK+INLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS 514
           KAYS+SGCRYK+DQV CYMCK GYGIP D  PS
Sbjct: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 513

BLAST of Lcy03g002340 vs. NCBI nr
Match: KAG7015626.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 896.0 bits (2314), Expect = 1.6e-256
Identity = 437/513 (85.19%), Postives = 475/513 (92.59%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWK SV  RFLVNRN+F P +FSL+  SN   FPHGLHTQS SSSSP  S+SSFSLL
Sbjct: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHLIFPHGLHTQSCSSSSPVQSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSD DLLVRS+MQRKVTEV HELIQNAEDSDKIVK LED+E FLLR+HAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           SSAF+ELLKQL S PHLALEVFNWRRRQEGSFPLTAEEYAK IT+AGRSKNVDLA+ELFT
Sbjct: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITLAGRSKNVDLAVELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASNKR+KTTS YNALMGAYM+NGLADKCHSLFRDLKR+ANCVPTIVTYNIL+SVFGRL+
Sbjct: 181 EASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKRDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT+REIHDLDLSPNVSTYNHLIAGYVT+WMWDKMEQTFLKMKA+SVKPNTET  
Sbjct: 241 LVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTETLL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++++L KDH +DKNFPLIR MICAYCRS+IADKV KIEALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMHELSKDHVDDKNFPLIRTMICAYCRSTIADKVTKIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           P+EEYRPWLNVLLI+VYAQEDWLERMENSINEAF++GTS+ T+HVM+SI  +YFRCNA+D
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDWLERMENSINEAFKHGTSVNTLHVMRSISASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFVSRAE SGWRICRSLYHCKMVMF S+KRFEEME VLDEMK+INLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS 514
           KAYS+SGCRYK+DQV CYMCK GYGIP D  PS
Sbjct: 481 KAYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 513

BLAST of Lcy03g002340 vs. NCBI nr
Match: XP_023553032.1 (pentatricopeptide repeat-containing protein At2g30780 [Cucurbita pepo subsp. pepo] >XP_023553033.1 pentatricopeptide repeat-containing protein At2g30780 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 889.8 bits (2298), Expect = 1.1e-254
Identity = 436/513 (84.99%), Postives = 471/513 (91.81%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWK SV  RFLVNRN+F P +FSL+  SN F FPHGLHTQS SSSSP PS+SSFSLL
Sbjct: 1   MKQLWKFSVRHRFLVNRNIFAPFSFSLANNSNHFIFPHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSD DLLVR +MQRKVTEV HELIQNAEDSDKIVK LED+E FLLR+HAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRRLMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           SSAF+ELLKQL S PHLALEVFNWRRRQEGSFPLTAEEYAK ITVAGRSKNVDLA ELFT
Sbjct: 121 SSAFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITVAGRSKNVDLAFELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASNKR+K TSTYNALMGAYM+NGLADKCHSLFRDLK +ANCVPTIVTYNIL+SVFGRL+
Sbjct: 181 EASNKRVKRTSTYNALMGAYMYNGLADKCHSLFRDLKMDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT+REIHDLDLSPNVSTYNHLIAGYVT+WMWDKMEQTFLKMKA+SVKPNTET  
Sbjct: 241 LVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTETLL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++++L KDH +D NFPLIR MICAYCRS+IADKV KIEALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMHELSKDHVDDMNFPLIRTMICAYCRSTIADKVTKIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           P+EEYRPWLNVLLI+VYAQED LERMENSINEAFE+GTS+ T+HVM+SI  +YFRCNA+D
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDLLERMENSINEAFEHGTSVNTLHVMRSISASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFVSRAE SGWRICRSLYHCKMVMF S+KRFEEME VLDEMK+INLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNINLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS 514
           K YS+SGCRYK+DQV CYMCK GYGIP D  PS
Sbjct: 481 KTYSLSGCRYKVDQVSCYMCKLGYGIPSDLSPS 513

BLAST of Lcy03g002340 vs. NCBI nr
Match: XP_023007782.1 (pentatricopeptide repeat-containing protein At2g30780 [Cucurbita maxima] >XP_023007783.1 pentatricopeptide repeat-containing protein At2g30780 [Cucurbita maxima])

HSP 1 Score: 886.3 bits (2289), Expect = 1.2e-253
Identity = 431/509 (84.68%), Postives = 472/509 (92.73%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWK SV  R LVNRN+F P +FSL+  SN   F HGLHTQS SSSSP PS+SSFSLL
Sbjct: 1   MKQLWKFSVRRRILVNRNIFAPFSFSLANNSNYDMFHHGLHTQSCSSSSPVPSISSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSD DLLVRSIMQRKVTEV HELIQNAEDSDKIVK LED+E FLLR+HAD
Sbjct: 61  PNIIELFSNKPSDQDLLVRSIMQRKVTEVMHELIQNAEDSDKIVKVLEDNEGFLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
           SS F+ELLKQL S PHLALEVFNWRRRQEGSFPLTAEEYAK ITVAGRSKNVDLA+ELFT
Sbjct: 121 SSTFVELLKQLGSQPHLALEVFNWRRRQEGSFPLTAEEYAKSITVAGRSKNVDLAVELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           +ASNKR+KTTS YNALMGAYM+NGLADKCHSLFRDLK +ANCVPTIVTYNIL+SVFGRL+
Sbjct: 181 KASNKRVKTTSIYNALMGAYMYNGLADKCHSLFRDLKTDANCVPTIVTYNILLSVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT+REIHDLDLSPNVSTYNHLIAGYVT+WMWDKMEQTFLKMKA+SVKPNT+TF 
Sbjct: 241 LVDHMEATLREIHDLDLSPNVSTYNHLIAGYVTAWMWDKMEQTFLKMKASSVKPNTDTFL 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHSDNL+KME++++LLKDH ++KNFPLIR MICAYCRS+IADKV KIEALLKLI
Sbjct: 301 LMLRGYAHSDNLEKMEEMHELLKDHVDEKNFPLIRTMICAYCRSTIADKVTKIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           P+EEYRPWLNVLLI+VYAQEDWLERME+SINEAFE+GTS+ T+HVM+SII +Y+RCNA+D
Sbjct: 361 PKEEYRPWLNVLLIKVYAQEDWLERMESSINEAFEHGTSVNTLHVMRSIIASYYRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFVSRAE SGWRICRSLYHCKMVMF S+KRFEEME VLDEMK++NLDWTKKTFWILY
Sbjct: 421 KLTNFVSRAECSGWRICRSLYHCKMVMFASEKRFEEMESVLDEMKNMNLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFD 510
           KAYS+S CRYK+DQV CYMCK GYGIP D
Sbjct: 481 KAYSLSDCRYKVDQVACYMCKLGYGIPSD 509

BLAST of Lcy03g002340 vs. NCBI nr
Match: XP_022145941.1 (pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145942.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145943.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145944.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145945.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145946.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145947.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_022145948.1 pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia])

HSP 1 Score: 883.6 bits (2282), Expect = 8.0e-253
Identity = 435/513 (84.80%), Postives = 475/513 (92.59%), Query Frame = 0

Query: 1   MKQLWKISVPLRFLVNRNVFPPLTFSLSKTSNCFSFPHGLHTQSLSSSSPPPSLSSFSLL 60
           MKQLWKISVP RFLV RN+F P TF L++TSN +    GLHTQ+ +SS  PPSLSSFSLL
Sbjct: 1   MKQLWKISVPRRFLVKRNIFAPFTFPLTRTSN-YLILRGLHTQTHTSSLLPPSLSSFSLL 60

Query: 61  PNIIELFSNKPSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHAD 120
           PNIIELFSNKPSDHDLLVR  MQRK+TEVRHELIQNA+DSDKIVKKLED ED LLR+HAD
Sbjct: 61  PNIIELFSNKPSDHDLLVRMNMQRKLTEVRHELIQNADDSDKIVKKLEDCEDLLLRRHAD 120

Query: 121 SSAFIELLKQLASLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFT 180
            SAF+ELLK+L S PHLALEVFNWRRRQEGSFP+TAEEYAKGITVAGRSKNVDLAIELFT
Sbjct: 121 GSAFVELLKKLDSRPHLALEVFNWRRRQEGSFPMTAEEYAKGITVAGRSKNVDLAIELFT 180

Query: 181 EASNKRIKTTSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLI 240
           EASN+RIKTTSTYNALMGAYMFNGL DKCHSLFRDLKREANCVPTIVTYNILISVFGRL+
Sbjct: 181 EASNRRIKTTSTYNALMGAYMFNGLVDKCHSLFRDLKREANCVPTIVTYNILISVFGRLM 240

Query: 241 LVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFS 300
           LVDHMEAT++EI DL LSPNVSTYN+LIAGYVT+WMWD+MEQTFL MKA+SVKPNTETFS
Sbjct: 241 LVDHMEATLQEIRDLKLSPNVSTYNNLIAGYVTAWMWDRMEQTFLTMKASSVKPNTETFS 300

Query: 301 LMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLI 360
           LMLRGYAHS NL+KME++Y+L++ H ++KNFPLIRAMICAYC SSIAD+VK+IEALLKLI
Sbjct: 301 LMLRGYAHSGNLEKMEEMYELVRGHVSNKNFPLIRAMICAYCWSSIADRVKRIEALLKLI 360

Query: 361 PEEEYRPWLNVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALD 420
           PEEEYRPWLNVLLIRVYAQEDWLE ME+SINEAFE+GTS+TT+HVM+SII +YFRCNA+D
Sbjct: 361 PEEEYRPWLNVLLIRVYAQEDWLEGMESSINEAFEHGTSVTTVHVMRSIIASYFRCNAVD 420

Query: 421 KLTNFVSRAESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILY 480
           KLTNFV RAE SGWRICRSLYHCKMVMF SQKR EEMECVL+EMKSINLDWTKKTFWILY
Sbjct: 421 KLTNFVKRAECSGWRICRSLYHCKMVMFASQKRLEEMECVLNEMKSINLDWTKKTFWILY 480

Query: 481 KAYSISGCRYKLDQVVCYMCKHGYGIPFDSCPS 514
           KAYS+SGCRYK+DQVV  MCK GYGIP DSCPS
Sbjct: 481 KAYSVSGCRYKVDQVVGLMCKLGYGIPLDSCPS 512

BLAST of Lcy03g002340 vs. TAIR 10
Match: AT2G30780.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 457.2 bits (1175), Expect = 1.7e-128
Identity = 222/434 (51.15%), Postives = 309/434 (71.20%), Query Frame = 0

Query: 71  PSDHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQ 130
           P+ H  LV     ++V+ ++ EL+      +K    L+    +L R + D +  +EL+ Q
Sbjct: 23  PAHHTDLV-----QRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQ 82

Query: 131 LASLPHLALEVFNWRRRQEG-SFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIKT 190
           L    +LAL+V  WRR Q+    PLT+EEYAKGI +AGR+++++LA+ LF EA+ KR++T
Sbjct: 83  LFPRHYLALQVLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQT 142

Query: 191 TSTYNALMGAYMFNGLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLILVDHMEATM 250
            S YN+LM  YM+NGLA++C SLF+D +R+ +C PT+VTYNIL+SV+GRL++V +MEA  
Sbjct: 143 ASVYNSLMSVYMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAF 202

Query: 251 REIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHS 310
            E+  + L PN  TYN LIAGY+T+W WDKME TF +MK   V+P+T+T+ LMLRGYA+S
Sbjct: 203 EELQKVKLPPNSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANS 262

Query: 311 DNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRPWL 370
            NL++ME++Y+++KD     + PL+RAMICAYC+ ++ D+V+KIE LL L+  EEY PWL
Sbjct: 263 GNLNRMEEMYEVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWL 322

Query: 371 NVLLIRVYAQEDWLERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALDKLTNFVSRA 430
           NVLLIR+YAQED++E ME+ INEAFE  T +    +M++II  YFRCN +D L NFV RA
Sbjct: 323 NVLLIRLYAQEDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRA 382

Query: 431 ESSGWRICRSLYHCKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILYKAYSISGCR 490
           ES+GW++CRSLYHCK++M+GSQKRFEEME V++EM   N     KTF I+ KAY   G  
Sbjct: 383 ESAGWKLCRSLYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGME 442

Query: 491 YKLDQVVCYMCKHG 504
              ++V   M K G
Sbjct: 443 SDAEKVKGKMLKRG 451

BLAST of Lcy03g002340 vs. TAIR 10
Match: AT2G48000.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 396.0 bits (1016), Expect = 4.7e-110
Identity = 205/423 (48.46%), Postives = 289/423 (68.32%), Query Frame = 0

Query: 89  VRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLASLPHLALEVFNWRRRQ 148
           ++++L++   DS K+   LE       R     +AF+ELL+QL   P L+  VF+WRR +
Sbjct: 55  LKNQLLRFRNDSGKVASVLE-------RNKIQGAAFVELLRQLRPWPVLSQLVFDWRRNK 114

Query: 149 E--GSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIKTTSTYNALMGAYMFNGLA 208
                 P+TA+EYAKGIT++GR KNVDLA+ LF E++N   KTTS YNALMGAY+ NGL+
Sbjct: 115 ALCDGLPMTADEYAKGITISGRLKNVDLALSLFHESAN---KTTSVYNALMGAYLCNGLS 174

Query: 209 DKCHSLFRDLKRE----ANCVPTIVTYNILISVFGRLILVDHMEATMREIHDLDLSPNVS 268
             C  LF D   +    ++  P++ TYNILIS++GRLI+V+ ME+   ++  L++ P+ S
Sbjct: 175 HHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFLQLQQLNILPDSS 234

Query: 269 TYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYAHSDNLDKMEQIYDLL 328
           TYN+LIAGY+ +W WDKME TF  MK   VKP   T+ LMLRGYA+S NL +ME +Y  +
Sbjct: 235 TYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYANSGNLLRMEDMYQAV 294

Query: 329 KDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRPWLNVLLIRVYAQEDW 388
           K H +     LI +MICAY RS   D+++KI+ L KLIP++ Y+PWL +LL++VYA++D 
Sbjct: 295 KRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKPWLYLLLMQVYAKDDN 354

Query: 389 LERMENSINEAFEYGTSITTIHVMKSIIGTYFRCNALDKLTNFVSRAESSGWRICRSLYH 448
           L  MEN I++A   G  I T  +M+SI+ +YFRCNA+DKL  FV RA S+GW++ RS++H
Sbjct: 355 LHAMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLAKFVQRANSAGWKMSRSMFH 414

Query: 449 CKMVMFGSQKRFEEMECVLDEMKSINLDWTKKTFWILYKAYSIS-GCRYKLDQVVCYMCK 505
             M+M+GSQKRF+EME VL EM+S  +  +KKT  IL + Y+ + G  +K++QV   M K
Sbjct: 415 GLMIMYGSQKRFKEMENVLSEMESFKISRSKKTLCILLRVYAATHGQEHKVNQVAGMMLK 467

BLAST of Lcy03g002340 vs. TAIR 10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-23
Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 0

Query: 73  DHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLA 132
           ++ +LVRS+M R     R  L++     DK VK +     FLL        F EL K   
Sbjct: 66  ENRVLVRSLMSR--ISDREPLVKTL---DKYVKVVRCDHCFLL--------FEELGKSDK 125

Query: 133 SLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIK-TTS 192
            L    LEVF W ++Q    P     Y+K I+V G+     +A+ LF+E  N   +   S
Sbjct: 126 WLQ--CLEVFRWMQKQRWYIPDNG-VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDAS 185

Query: 193 TYNALMGAYMFN----GLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLILVDHMEA 252
            YNAL+ A++         +K       +K    C P +VTYNIL+  F +   VD + A
Sbjct: 186 VYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNA 245

Query: 253 TMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYA 312
             +++    +SP+V T+N ++  Y  + M  +ME    +M++N  KP+  TF++++  Y 
Sbjct: 246 LFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYG 305

Query: 313 HSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRP 368
                +KMEQ +  L         P   +MI  Y ++ + DK    E + K + +  Y P
Sbjct: 306 KKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKA---EWVFKKMNDMNYIP 346

BLAST of Lcy03g002340 vs. TAIR 10
Match: AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-23
Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 0

Query: 73  DHDLLVRSIMQRKVTEVRHELIQNAEDSDKIVKKLEDSEDFLLRKHADSSAFIELLKQLA 132
           ++ +LVRS+M R     R  L++     DK VK +     FLL        F EL K   
Sbjct: 66  ENRVLVRSLMSR--ISDREPLVKTL---DKYVKVVRCDHCFLL--------FEELGKSDK 125

Query: 133 SLPHLALEVFNWRRRQEGSFPLTAEEYAKGITVAGRSKNVDLAIELFTEASNKRIK-TTS 192
            L    LEVF W ++Q    P     Y+K I+V G+     +A+ LF+E  N   +   S
Sbjct: 126 WLQ--CLEVFRWMQKQRWYIPDNG-VYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDAS 185

Query: 193 TYNALMGAYMFN----GLADKCHSLFRDLKREANCVPTIVTYNILISVFGRLILVDHMEA 252
            YNAL+ A++         +K       +K    C P +VTYNIL+  F +   VD + A
Sbjct: 186 VYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNA 245

Query: 253 TMREIHDLDLSPNVSTYNHLIAGYVTSWMWDKMEQTFLKMKANSVKPNTETFSLMLRGYA 312
             +++    +SP+V T+N ++  Y  + M  +ME    +M++N  KP+  TF++++  Y 
Sbjct: 246 LFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYG 305

Query: 313 HSDNLDKMEQIYDLLKDHDNDKNFPLIRAMICAYCRSSIADKVKKIEALLKLIPEEEYRP 368
                +KMEQ +  L         P   +MI  Y ++ + DK    E + K + +  Y P
Sbjct: 306 KKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKA---EWVFKKMNDMNYIP 346

BLAST of Lcy03g002340 vs. TAIR 10
Match: AT5G02860.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-15
Identity = 75/343 (21.87%), Postives = 146/343 (42.57%), Query Frame = 0

Query: 159 YAKGITVAGRSKNVDLAIELFTEASNKRIK-TTSTYNALMGAYMFNGLADKCHSLFRDLK 218
           Y   I+   R   +D A+EL  + + K  K    TY  L+  +   G  +   S+F ++ 
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEM- 411

Query: 219 REANCVPTIVTYNILISVFGRLILVDHMEATMREIHDLDLSPNVSTYNHLIAGYVTSWMW 278
           R A C P I T+N  I ++G       M     EI+   LSP++ T+N L+A +  + M 
Sbjct: 412 RNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMD 471

Query: 279 DKMEQTFLKMKANSVKPNTETFSLMLRGYAHSDNLDKMEQIYDLLKDHDNDKNFPLIRAM 338
            ++   F +MK     P  ETF+ ++  Y+   + ++   +Y  + D     +      +
Sbjct: 472 SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTV 531

Query: 339 ICAYCRSSIADKVKKIEALLKLIPEEEYRPWLNVL----LIRVYAQEDWLERMENSINEA 398
           + A  R  + ++ +K+     L   E+ R   N L    L+  YA    +  M +   E 
Sbjct: 532 LAALARGGMWEQSEKV-----LAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 591

Query: 399 FEYGTSITTIHVMKSIIGTYFRCNALDKLTNFVSRAESSGWRICRSLYHCKMVMFGSQKR 458
           +  G       ++K+++    +C+ L +     S  +  G+    +  +  + ++G ++ 
Sbjct: 592 YS-GVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 651

Query: 459 FEEMECVLDEMKSINLDWTKKTFWILYKAYSISGCRYKLDQVV 497
             +   VLD MK      +  T+  L   +S S    K ++++
Sbjct: 652 VAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEIL 687

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O493432.4e-12751.15Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana OX... [more]
Q9ZU886.6e-10948.46Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana OX... [more]
A7LN875.0e-2427.98Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4... [more]
A3ABE16.6e-2428.52Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza... [more]
Q9SV961.6e-2229.33Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1E6A93.6e-25985.96pentatricopeptide repeat-containing protein At2g30780 OS=Cucurbita moschata OX=3... [more]
A0A6J1L8L96.0e-25484.68pentatricopeptide repeat-containing protein At2g30780 OS=Cucurbita maxima OX=366... [more]
A0A6J1CXA63.9e-25384.80pentatricopeptide repeat-containing protein At2g30780 OS=Momordica charantia OX=... [more]
A0A5D3D7D21.3e-23278.06Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BKY23.2e-23177.67pentatricopeptide repeat-containing protein At2g30780 OS=Cucumis melo OX=3656 GN... [more]
Match NameE-valueIdentityDescription
XP_022923507.17.4e-25985.96pentatricopeptide repeat-containing protein At2g30780 [Cucurbita moschata] >XP_0... [more]
KAG7015626.11.6e-25685.19Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_023553032.11.1e-25484.99pentatricopeptide repeat-containing protein At2g30780 [Cucurbita pepo subsp. pep... [more]
XP_023007782.11.2e-25384.68pentatricopeptide repeat-containing protein At2g30780 [Cucurbita maxima] >XP_023... [more]
XP_022145941.18.0e-25384.80pentatricopeptide repeat-containing protein At2g30780 [Momordica charantia] >XP_... [more]
Match NameE-valueIdentityDescription
AT2G30780.11.7e-12851.15Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G48000.14.7e-11048.46Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G39620.11.1e-2329.33Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.21.1e-2329.33Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G02860.11.1e-1521.87Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 253..327
e-value: 3.1E-14
score: 54.9
coord: 89..252
e-value: 7.1E-24
score: 86.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 373..511
e-value: 2.3E-6
score: 29.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 263..296
e-value: 1.1E-4
score: 20.1
coord: 192..225
e-value: 7.3E-4
score: 17.5
coord: 227..261
e-value: 4.9E-4
score: 18.1
coord: 298..325
e-value: 0.002
score: 16.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 189..236
e-value: 8.3E-10
score: 38.7
coord: 259..307
e-value: 8.3E-13
score: 48.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 260..294
score: 10.380408
NoneNo IPR availablePANTHERPTHR47874:SF1OS05G0407900 PROTEINcoord: 30..512
IPR044179Pentatricopeptide repeat-containing protein PPR5-likePANTHERPTHR47874EXPRESSED PROTEINcoord: 30..512

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g002340.1Lcy03g002340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding