Lcy03g002200 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g002200
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 7936044 .. 7937031 (+)
RNA-Seq ExpressionLcy03g002200
SyntenyLcy03g002200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCTGGCGCAGCATGAGCTATCGGACGATGAGAGAGGTTCTCTTATGCGCATCCTCTTCACCAAACCGAAGATGACAAATATGATGTTGTCTGTGCCACCGAACCTCAGGCTTCGCTTTCTACGAGGACTACTGAATGAACGCCGGTGACTTCCGACTTTCCTCCACCATACTTTTGATTTGTAATTACGAAAATATGTACCTTCGATTAACATTTCACTATTTTTTGTTAACTGTAATATAGTCAACCCATCGTCAATTTTTTGTATAGGGTTGATCATTATGTTCCTAATGTTTATGGAATCAATCAACTTACAAATGTCAATGAAATCAGTCCACGAAGTTTCTGCAGTATCACTTATCCCATGTACATTTTTCACTTTAAAATGTTTTGCAATTCATTCTTCTCGTCTAATGTCACCAATAACACACGAATGTGTGTAAGTCTAACTTAAACAAATTAGAATGGTAATAATTGTTATTAATTTTCGAACATTTTTTAACCATCTTAACCATATATGGTTATGCATTTCAGGACGTGTCTAACATTAATCTTTTTTGTTATAACGATCATACTTTAGCGATCTACGACCGAATGGCATCAATGGCGACAAATGAAGTGGATGAGGATATGTCTGACACGAGCAGTAAAATCGAGCCAGAATATGCATCATCAGCACGGAGTAGTAGGAGACGATGTTCCTACAAGAGAGAGATAACTGAGGTCATAAAGGATGCAATGGACAGTCAAATTACCAGTCTTCATAGAATCTCATCGTGGTCGGATCGAAAGAACGAACGGGACGCTGCACGCCGTAAGTTGGTAGTCGAGGACATAGAAGAAATGGTATACTTCGATGAACGAGATAAAACTCAACTTCTCAAAGTGCTGCTCGCTGATATGCATCAAATCGAGACTTTCCTATCAATGCCCATGTCTTTGAGAAAAATACATTGCATGCATCTTCTTGGAAGGAATGAATGA

mRNA sequence

ATGCTCCTGGCGCAGCATGAGCTATCGGACGATGAGAGAGGTTCTCTTATGCGCATCCTCTTCACCAAACCGAAGATGACAAATATGATGTTGTCTGTGCCACCGAACCTCAGGCTTCGCTTTCTACGAGGACTACTGAATGAACGCCGGGTTGATCATTATGTTCCTAATGTTTATGGAATCAATCAACTTACAAATGTCAATGAAATCAGTCCACGAAGTTTCTGCAGTATCACTTATCCCATGTACATTTTTCACTTTAAAATGTTTTGCAATTCATTCTTCTCGTCTAATGTCACCAATAACACACGAATGTGTGACGTGTCTAACATTAATCTTTTTTGTTATAACGATCATACTTTAGCGATCTACGACCGAATGGCATCAATGGCGACAAATGAAGTGGATGAGGATATGTCTGACACGAGCAGTAAAATCGAGCCAGAATATGCATCATCAGCACGGAGTAGTAGGAGACGATGTTCCTACAAGAGAGAGATAACTGAGGTCATAAAGGATGCAATGGACAGTCAAATTACCAGTCTTCATAGAATCTCATCGTGGTCGGATCGAAAGAACGAACGGGACGCTGCACGCCGTAAGTTGGTAGTCGAGGACATAGAAGAAATGGTATACTTCGATGAACGAGATAAAACTCAACTTCTCAAAGTGCTGCTCGCTGATATGCATCAAATCGAGACTTTCCTATCAATGCCCATGTCTTTGAGAAAAATACATTGCATGCATCTTCTTGGAAGGAATGAATGA

Coding sequence (CDS)

ATGCTCCTGGCGCAGCATGAGCTATCGGACGATGAGAGAGGTTCTCTTATGCGCATCCTCTTCACCAAACCGAAGATGACAAATATGATGTTGTCTGTGCCACCGAACCTCAGGCTTCGCTTTCTACGAGGACTACTGAATGAACGCCGGGTTGATCATTATGTTCCTAATGTTTATGGAATCAATCAACTTACAAATGTCAATGAAATCAGTCCACGAAGTTTCTGCAGTATCACTTATCCCATGTACATTTTTCACTTTAAAATGTTTTGCAATTCATTCTTCTCGTCTAATGTCACCAATAACACACGAATGTGTGACGTGTCTAACATTAATCTTTTTTGTTATAACGATCATACTTTAGCGATCTACGACCGAATGGCATCAATGGCGACAAATGAAGTGGATGAGGATATGTCTGACACGAGCAGTAAAATCGAGCCAGAATATGCATCATCAGCACGGAGTAGTAGGAGACGATGTTCCTACAAGAGAGAGATAACTGAGGTCATAAAGGATGCAATGGACAGTCAAATTACCAGTCTTCATAGAATCTCATCGTGGTCGGATCGAAAGAACGAACGGGACGCTGCACGCCGTAAGTTGGTAGTCGAGGACATAGAAGAAATGGTATACTTCGATGAACGAGATAAAACTCAACTTCTCAAAGTGCTGCTCGCTGATATGCATCAAATCGAGACTTTCCTATCAATGCCCATGTCTTTGAGAAAAATACATTGCATGCATCTTCTTGGAAGGAATGAATGA

Protein sequence

MLLAQHELSDDERGSLMRILFTKPKMTNMMLSVPPNLRLRFLRGLLNERRVDHYVPNVYGINQLTNVNEISPRSFCSITYPMYIFHFKMFCNSFFSSNVTNNTRMCDVSNINLFCYNDHTLAIYDRMASMATNEVDEDMSDTSSKIEPEYASSARSSRRRCSYKREITEVIKDAMDSQITSLHRISSWSDRKNERDAARRKLVVEDIEEMVYFDERDKTQLLKVLLADMHQIETFLSMPMSLRKIHCMHLLGRNE
Homology
BLAST of Lcy03g002200 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 37/129 (28.68%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 127 MASMATNEVDEDMSDTSSKIEPEYASSARSSRRRCSYKREITEVIKDAMDSQITSLHRIS 186
           M +   + ++ED+ +T +       SS  S R+R  Y  E+ +V++  M  Q   L +++
Sbjct: 90  MFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMA 149

Query: 187 SWSDRKNERDAARRKLVVEDIEEMVYFDERDKTQLLKVLLADMHQIETFLSMPMSLRKIH 246
           +W D+K E+  ARRK+V + ++++   +  D  +L+ +L+ ++ +  +FL +P+  +K+ 
Sbjct: 150 TWPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMF 209

Query: 247 CMHLLGRNE 256
           CM LLG++E
Sbjct: 210 CMQLLGKSE 218

BLAST of Lcy03g002200 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-09
Identity = 44/139 (31.65%), Postives = 80/139 (57.55%), Query Frame = 0

Query: 117 NDHTLAIYDRMASMATNEVDEDMSDTSSKIEPEYASSAR-SSRRRCSYKREITEVIKDAM 176
           N HT  +    + +  +E+DE+ ++ S+      A S+R S R+R S++ E+ ++++  +
Sbjct: 138 NCHTPEVCQAESPLNQDEIDEEPAEQSTGRASVLAESSRGSKRKRPSFQAEMIDIMRSTV 197

Query: 177 DSQITSLHRISSWSDRKNERDAARRKLVVEDIEEMVYFDERDKTQLLKVLLADMHQIETF 236
           + Q T + R++SW   K E +  RRK VV  I  +   DE D+   + +L+ D+ + + F
Sbjct: 198 EMQSTHMGRLASWQKEKYELEFGRRKEVVNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCF 257

Query: 237 LSMPMSLRKIHCMHLLGRN 255
           L++P   RK +C+HLL RN
Sbjct: 258 LAVPEHARKRYCLHLLERN 276

BLAST of Lcy03g002200 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-09
Identity = 37/129 (28.68%), Postives = 76/129 (58.91%), Query Frame = 0

Query: 127 MASMATNEVDEDMSDTSSKIEPEYASSARSSRRRCSYKREITEVIKDAMDSQITSLHRIS 186
           M +   + ++ED+ +T +       SS  S R+R  Y  E+ +V++  M  Q   L +++
Sbjct: 90  MFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMA 149

Query: 187 SWSDRKNERDAARRKLVVEDIEEMVYFDERDKTQLLKVLLADMHQIETFLSMPMSLRKIH 246
           +W D+K E+  ARRK+V + ++++   +  D  +L+ +L+ ++ +  +FL +P+  +K+ 
Sbjct: 150 TWPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMF 209

Query: 247 CMHLLGRNE 256
           CM LLG++E
Sbjct: 210 CMQLLGKSE 218

BLAST of Lcy03g002200 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-07
Identity = 40/137 (29.20%), Postives = 78/137 (56.93%), Query Frame = 0

Query: 119 HTLAIYDRMASMATNEVDEDMSDTSS-KIEPEYASSARSSRRRCSYKREITEVIKDAMDS 178
           HT  +    + +  +E+DE+ ++ S+ +      SS  S R+R S++ E+ +++K  ++ 
Sbjct: 140 HTPEVRQTESPLNQDEIDEEPAEQSTGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVEM 199

Query: 179 QITSLHRISSWSDRKNERDAARRKLVVEDIEEMVYFDERDKTQLLKVLLADMHQIETFLS 238
           Q T + R++SW + K E +    K VV  I  +   +E D+  L+ +++ D+ + + FL+
Sbjct: 200 QSTHMGRLASWQNEKYELEL---KEVVNAIYNIDDLEENDQVTLIDLIVTDIQKTDCFLA 259

Query: 239 MPMSLRKIHCMHLLGRN 255
           +P   RK +C+ LLGRN
Sbjct: 260 VPEHARKRYCLRLLGRN 273

BLAST of Lcy03g002200 vs. NCBI nr
Match: XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-06
Identity = 38/137 (27.74%), Postives = 77/137 (56.20%), Query Frame = 0

Query: 119 HTLAIYDRMASMATNEVDEDMSDTSS-KIEPEYASSARSSRRRCSYKREITEVIKDAMDS 178
           HT  +    + +  +E+DE+ ++ S+ +      SS  S R+R S++ E+ ++++  ++ 
Sbjct: 120 HTPEVCQIESLLNQDEIDEEPTEQSTGRTSIPVESSRGSKRKRSSFQVEMIDIMRSTVEM 179

Query: 179 QITSLHRISSWSDRKNERDAARRKLVVEDIEEMVYFDERDKTQLLKVLLADMHQIETFLS 238
             T + R++SW  +K E +  R+K VV  I  +   DE  +  L+ +++ D+ + + FL+
Sbjct: 180 HSTHMGRLASWQKKKYELEFGRQKEVVNAIYNIDGLDEDTQVTLIDLVVTDIQKTDCFLA 239

Query: 239 MPMSLRKIHCMHLLGRN 255
           +P    K +C+ LLGRN
Sbjct: 240 VPEHAWKRYCLRLLGRN 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW731.1e-0928.68uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
XP_038896380.11.3e-0931.65uncharacterized protein LOC120084641 [Benincasa hispida][more]
XP_022158565.12.2e-0928.68uncharacterized protein LOC111025018 [Momordica charantia][more]
XP_038887234.13.5e-0729.20uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_038877407.13.9e-0627.74uncharacterized protein LOC120069696 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g002200.1Lcy03g002200.1mRNA