Lcy02g007590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g007590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr02: 10410777 .. 10411061 (-)
RNA-Seq Expression	Lcy02g007590
Synteny	Lcy02g007590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGGGCATGATCATTAGAAACTCAAAGGGCGAATCGATGGCGACTGCAGAATATTTCAGGAGAACGAGTTGCTCAGTAGAATGGGCAAAAGCACAGGCTCTTGTAGATGGCGTTCGTTTAGCTATGGATTCTGAACTATCATCGGTCTGTGTAGAGATAGATTCCAAAATTGTGTGGAATCTACTTCATGACTATGACATTTATCATAATGAGATCGCTCCTCTCATTCACCATCTCAAGCAGCTGGCCATAAACAAGCCATTAGGGGGTTTTTACTAA

mRNA sequence

ATGGGATTGGGCATGATCATTAGAAACTCAAAGGGCGAATCGATGGCGACTGCAGAATATTTCAGGAGAACGAGTTGCTCAGTAGAATGGGCAAAAGCACAGGCTCTTGTAGATGGCGTTCGTTTAGCTATGGATTCTGAACTATCATCGGTCTGTGTAGAGATAGATTCCAAAATTGTGTGGAATCTACTTCATGACTATGACATTTATCATAATGAGATCGCTCCTCTCATTCACCATCTCAAGCAGCTGGCCATAAACAAGCCATTAGGGGGTTTTTACTAA

Coding sequence (CDS)

ATGGGATTGGGCATGATCATTAGAAACTCAAAGGGCGAATCGATGGCGACTGCAGAATATTTCAGGAGAACGAGTTGCTCAGTAGAATGGGCAAAAGCACAGGCTCTTGTAGATGGCGTTCGTTTAGCTATGGATTCTGAACTATCATCGGTCTGTGTAGAGATAGATTCCAAAATTGTGTGGAATCTACTTCATGACTATGACATTTATCATAATGAGATCGCTCCTCTCATTCACCATCTCAAGCAGCTGGCCATAAACAAGCCATTAGGGGGTTTTTACTAA

Protein sequence

MGLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIVWNLLHDYDIYHNEIAPLIHHLKQLAINKPLGGFY

Homology

[Close]

BLAST of Lcy02g007590 vs. ExPASy TrEMBL
Match: V4S2G0 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10006508mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1   MGLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIV 60
           +GLG++IRNS+GE MA +   R     +++A+  AL++G++LAMD  L+ + +E DS  V
Sbjct: 106 VGLGVVIRNSRGEFMAASICRRSFLDDIKFAETSALLEGIKLAMDLGLTLLVIESDSVNV 165

Query: 61  WNLLHDYDIYHNEIAPLIHHLKQLAINKPL 91
            +L+    I + EI  +I +++ L  N+ L
Sbjct: 166 ISLISGRIINNFEIHWIISNIRALICNRSL 195

[Close]

BLAST of Lcy02g007590 vs. ExPASy TrEMBL
Match: A0A2H5PQV5 (RNase H domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_159060 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-05
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1   MGLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIV 60
           +GLG++IRNS+GE MA +   R     +++A+  AL++G++LAMD  L+ + +E DS  V
Sbjct: 106 VGLGVVIRNSRGEFMAASICRRSFLDDIKFAETSALLEGIKLAMDLGLTLLVIESDSVNV 165

Query: 61  WNLLHDYDIYHNEIAPLIHHLKQLAINKPL 91
            +L+    I + EI  +I +++ L  N+ L
Sbjct: 166 ISLISGRIINNFEIHWIISNIRALICNRSL 195

[Close]

BLAST of Lcy02g007590 vs. ExPASy TrEMBL
Match: V4RLS8 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10007098mg PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 2  GLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIVW 61
          GLG++IRNSKGE M  + Y RR    +E A+A A+++G++LA D  L+ + VE DS  V 
Sbjct: 20 GLGVVIRNSKGEFMTASNYRRRFFGDIELAEASAILEGIKLAEDLGLTPLVVESDSINVI 79

Query: 62 NLL 65
           L+
Sbjct: 80 RLM 82

[Close]

BLAST of Lcy02g007590 vs. NCBI nr
Match: ESR34492.1 (hypothetical protein CICLE_v10006508mg, partial [Citrus clementina])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1   MGLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIV 60
           +GLG++IRNS+GE MA +   R     +++A+  AL++G++LAMD  L+ + +E DS  V
Sbjct: 106 VGLGVVIRNSRGEFMAASICRRSFLDDIKFAETSALLEGIKLAMDLGLTLLVIESDSVNV 165

Query: 61  WNLLHDYDIYHNEIAPLIHHLKQLAINKPL 91
            +L+    I + EI  +I +++ L  N+ L
Sbjct: 166 ISLISGRIINNFEIHWIISNIRALICNRSL 195

[Close]

BLAST of Lcy02g007590 vs. NCBI nr
Match: GAY54740.1 (hypothetical protein CUMW_159060 [Citrus unshiu])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 33/90 (36.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1   MGLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIV 60
           +GLG++IRNS+GE MA +   R     +++A+  AL++G++LAMD  L+ + +E DS  V
Sbjct: 106 VGLGVVIRNSRGEFMAASICRRSFLDDIKFAETSALLEGIKLAMDLGLTLLVIESDSVNV 165

Query: 61  WNLLHDYDIYHNEIAPLIHHLKQLAINKPL 91
            +L+    I + EI  +I +++ L  N+ L
Sbjct: 166 ISLISGRIINNFEIHWIISNIRALICNRSL 195

[Close]

BLAST of Lcy02g007590 vs. NCBI nr
Match: ESR35143.1 (hypothetical protein CICLE_v10007098mg, partial [Citrus clementina])

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 2  GLGMIIRNSKGESMATAEYFRRTSCSVEWAKAQALVDGVRLAMDSELSSVCVEIDSKIVW 61
          GLG++IRNSKGE M  + Y RR    +E A+A A+++G++LA D  L+ + VE DS  V 
Sbjct: 20 GLGVVIRNSKGEFMTASNYRRRFFGDIELAEASAILEGIKLAEDLGLTPLVVESDSINVI 79

Query: 62 NLL 65
           L+
Sbjct: 80 RLM 82

The following BLAST results are available for this feature:

BLAST of Lcy02g007590 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g007590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V4S2G0	3.8e-05	36.67	RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI...	[more]
A0A2H5PQV5	3.8e-05	36.67	RNase H domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_159060 PE=4 ...	[more]
V4RLS8	1.9e-04	46.03	RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI...	[more]

BLAST of Lcy02g007590 vs. NCBI nr


Match Name	E-value	Identity	Description
ESR34492.1	7.8e-05	36.67	hypothetical protein CICLE_v10006508mg, partial [Citrus clementina]	[more]
GAY54740.1	7.8e-05	36.67	hypothetical protein CUMW_159060 [Citrus unshiu]	[more]
ESR35143.1	3.9e-04	46.03	hypothetical protein CICLE_v10007098mg, partial [Citrus clementina]	[more]

BLAST of Lcy02g007590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..88 e-value: 2.6E-5 score: 26.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..84 e-value: 2.6E-11 score: 43.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g007590.1	Lcy02g007590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity