Lcy02g000030 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g000030
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein TOPLESS
Location	Chr02: 175367 .. 176396 (+)
RNA-Seq Expression	Lcy02g000030
Synteny	Lcy02g000030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACAATGGTGCAACGTAACGGTAATATACATTTGATTGAAGGCCAGGAGGCTCATGTTTTCTCTTTTTGCCCCAACTACAGGGAAAATATTCAGGTTTGCCTTTCATGTGCTACACTGGGTTTTGTTGAGGCTACTTGATACTTATTCTGCCTAATCTGCTGCACAGCATGGAAAGATAAAGGCATGACTATATGATAATATGGGTTCACGAGTTATGATGCTCCTCAGTGTTGGTGCACAACGATGGCTTATATTGAAGATGGTATGTGGTAAGAAATACTTAGCTGTGTGGGGGATACTTGGACTTAACAATGTAAAGAATTATACAACTTCTTTATTTTTCTCACTTTCATGGTTTGGTGATGGATGTTTTAGGCTCTTCTCATGTGGGACAAGTAATGATGGAGAGTCTTATATTGTTGAGTGGAATGAGAGTGAAGGAGCAGTTAAGAGAACTTACCAAGGGTTCCTCAAGCGGTCTCTGGGTGCTGTAAGTTGGATACAACTACAAATCTGTTTTTTGGCAGCAGGTGATGATCTCCATTAAATTTTGAGACATGGACAATGTTCAACTTTTGATGACCGTAGATGCTGATGGAGGAGTTTGTGCAAGTTTCCCGGTAAGTTTCCGTGCAAGTCAATTGAAAAATTAGAAGAAAATTGTAATTAACATTTGCATACTGTTTTCTGTTCATTCCCTTTAATATCAAAGGCAAGTCCACGCATCTGCTTTAACAAGGATTGGTCCCTTTTTGCTGTTTCTAGCAATGAGAATGGAATTAAAATCTTAGCAAATGTGGATGGAATCCAGCTATTGCAAGCATTTGAAAATCTTTCTTATGATGCATCTAGAACGTCAGAGGCCGGGATAAAGGTAGTTTGATTCTATGTTCAATTAATGTGACTTTTAACCATGTTAACTCTTTTGCTTAATATCTAATTAACTTATATTTAATTTTTGCAGCCCACAGTAAATCCAATTTCAACTGCTACTGGTAGTGTAGGCCTTGCTGAGAGAGCATAG

mRNA sequence

ATGCTGACAATGGTGCAACGTAACGGTAATATACATTTGATTGAAGGCCAGGAGGCTCATGTTTTCTCTTTTTGCCCCAACTACAGGGAAAATATTCAGTGTTGGTGCACAACGATGGCTTATATTGAAGATGGTATGTGGCTCTTCTCATGTGGGACAAGTAATGATGGAGAGTCTTATATTGTTGAGTGGAATGAGAGTGAAGGAGCAGTTAAGAGAACTTACCAAGGGTTCCTCAAGCGGTCTCTGGGTGCTGCAAGTCCACGCATCTGCTTTAACAAGGATTGGTCCCTTTTTGCTGTTTCTAGCAATGAGAATGGAATTAAAATCTTAGCAAATGTGGATGGAATCCAGCTATTGCAAGCATTTGAAAATCTTTCTTATGATGCATCTAGAACGTCAGAGGCCGGGATAAAGCCCACAGTAAATCCAATTTCAACTGCTACTGGTAGTGTAGGCCTTGCTGAGAGAGCATAG

Coding sequence (CDS)

ATGCTGACAATGGTGCAACGTAACGGTAATATACATTTGATTGAAGGCCAGGAGGCTCATGTTTTCTCTTTTTGCCCCAACTACAGGGAAAATATTCAGTGTTGGTGCACAACGATGGCTTATATTGAAGATGGTATGTGGCTCTTCTCATGTGGGACAAGTAATGATGGAGAGTCTTATATTGTTGAGTGGAATGAGAGTGAAGGAGCAGTTAAGAGAACTTACCAAGGGTTCCTCAAGCGGTCTCTGGGTGCTGCAAGTCCACGCATCTGCTTTAACAAGGATTGGTCCCTTTTTGCTGTTTCTAGCAATGAGAATGGAATTAAAATCTTAGCAAATGTGGATGGAATCCAGCTATTGCAAGCATTTGAAAATCTTTCTTATGATGCATCTAGAACGTCAGAGGCCGGGATAAAGCCCACAGTAAATCCAATTTCAACTGCTACTGGTAGTGTAGGCCTTGCTGAGAGAGCATAG

Protein sequence

MLTMVQRNGNIHLIEGQEAHVFSFCPNYRENIQCWCTTMAYIEDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGAASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFENLSYDASRTSEAGIKPTVNPISTATGSVGLAERA

Homology

[Close]

BLAST of Lcy02g000030 vs. ExPASy Swiss-Prot
Match: Q10NY2 (Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-38
Identity = 94/214 (43.93%), Postives = 114/214 (53.27%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYIEDG 74
           EG EA V+S CP+Y+ENIQ                              WCTTMAY  DG
Sbjct: 498 EGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAYSADG 557

Query: 75  MWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA-------------------- 134
             LFSCGTS DGES++VEWNESEGAVKRTYQGF KRS+G                     
Sbjct: 558 SRLFSCGTSKDGESHLVEWNESEGAVKRTYQGFRKRSMGVVQFDTTRNRFLAAGDEFLIK 617

Query: 135 --------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFEN 159
                               ASPR+ FNK+ +L AVS++ENGIKILAN DG++LL+  EN
Sbjct: 618 IWDMDNTSLLTTIDADGGLPASPRVRFNKEGTLLAVSTHENGIKILANADGVRLLRTLEN 677

[Close]

BLAST of Lcy02g000030 vs. ExPASy Swiss-Prot
Match: Q94AI7 (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-36
Identity = 96/220 (43.64%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           H  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 500 HTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 559

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 560 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 619

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 159
                                  ASPRI FNK+ SL AVS NEN IKI+AN DG++LL  
Sbjct: 620 SIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHT 679

[Close]

BLAST of Lcy02g000030 vs. ExPASy Swiss-Prot
Match: Q0WV90 (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-34
Identity = 87/207 (42.03%), Postives = 104/207 (50.24%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           +  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 500 YTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYS 559

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 560 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 619

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 150
                                  ASPRI FNK+ SL AVS+N+N IK++AN DG++LL  
Sbjct: 620 SIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHT 679

[Close]

BLAST of Lcy02g000030 vs. ExPASy Swiss-Prot
Match: Q0J7U6 (Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.9e-32
Identity = 86/210 (40.95%), Postives = 106/210 (50.48%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQ-----------------C------------WCTTMAYI 71
           +  EG EA V+S CP+Y+E+IQ                 C            WCTTMAY 
Sbjct: 491 YTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYS 550

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DG+S++VEWNE+EGA+KRTY GF KRSLG                  
Sbjct: 551 ADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEF 610

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 153
                                  ASPR+ FN++ SL AV++NENGIKILAN DG +LL+ 
Sbjct: 611 VVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILANTDGQRLLRM 670

[Close]

BLAST of Lcy02g000030 vs. ExPASy Swiss-Prot
Match: Q9LRZ0 (Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-28
Identity = 77/210 (36.67%), Postives = 100/210 (47.62%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYIEDG 74
           EG EA V+S CP+ +ENIQ                              WCTTM Y  DG
Sbjct: 493 EGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADG 552

Query: 75  MWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGAAS------------------ 134
             LFSCGTS +G+S++VEWNESEGA+KRTY GF K+S G                     
Sbjct: 553 SRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIK 612

Query: 135 ----------------------PRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFEN 153
                                 PR+ FNKD +L AV++ +NG KILAN DG++ L+AFE 
Sbjct: 613 FWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEA 672

[Close]

BLAST of Lcy02g000030 vs. ExPASy TrEMBL
Match: A0A6J1DKI7 (protein TOPLESS OS=Momordica charantia OX=3673 GN=LOC111020907 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 114/223 (51.12%), Postives = 123/223 (55.16%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           +  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 499 YTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 558

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGESYIVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 559 ADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 618

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 158
                                  ASPRI FNKD +L AVS NENGIKILANVDGI+LL+ 
Sbjct: 619 SIKFWDMDNVQLLTTVDAEGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRT 678

[Close]

BLAST of Lcy02g000030 vs. ExPASy TrEMBL
Match: A0A2P5BSC8 (Topless-like WD40 repeat containing protein OS=Parasponia andersonii OX=3476 GN=PanTPL PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.8e-45
Identity = 110/213 (51.64%), Postives = 122/213 (57.28%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYIEDG 74
           EG EA V+S CP+Y+ENIQ                              WCTTMAY  DG
Sbjct: 500 EGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADG 559

Query: 75  MWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA-------------------- 134
             LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                     
Sbjct: 560 TRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 619

Query: 135 --------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFEN 159
                               ASPRI FNKD SL AVS+N+NGIK+LAN DG++LL+ FEN
Sbjct: 620 FWDMDNVQLLTTVDADGGLPASPRIRFNKDGSLLAVSANDNGIKVLANTDGLRLLRTFEN 679

[Close]

BLAST of Lcy02g000030 vs. ExPASy TrEMBL
Match: A0A0A0KTH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006320 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.1e-44
Identity = 109/213 (51.17%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           ++ EG EA VFS CP+Y+ENIQ                              WCTTMAY 
Sbjct: 445 YIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 504

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DG+SYIVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 505 ADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 564

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 156
                                  ASPRI FNKD +L AVS NENGIKILANVDGI+LL+ 
Sbjct: 565 SIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRT 624

[Close]

BLAST of Lcy02g000030 vs. ExPASy TrEMBL
Match: A0A2P5EWW8 (Topless-related protein OS=Trema orientale OX=63057 GN=TorTPLR5 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 111/211 (52.61%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-------------------WCTTMAYIEDGMWLFSCGTSN 74
           EG EA V+S CP+Y+ENIQ                    WCTTMAY  DG  LFSCGTS 
Sbjct: 500 EGHEAPVYSVCPHYKENIQIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSK 559

Query: 75  DGESYIVEWNESEGAVKRTYQGFLKRSLGA------------------------------ 134
           DGES+IVEWNESEGAVKRTYQGF KRSLG                               
Sbjct: 560 DGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLL 619

Query: 135 ----------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFENLSYDASRTSE 159
                     ASPRI FNKD SL AVS+N+NGIKILAN DG++LL+ FENLSYDASRTSE
Sbjct: 620 TTVDADGGLPASPRIRFNKDGSLLAVSANDNGIKILANTDGLRLLRTFENLSYDASRTSE 679

[Close]

BLAST of Lcy02g000030 vs. ExPASy TrEMBL
Match: A0A6J1IYH0 (protein TOPLESS OS=Cucurbita maxima OX=3661 GN=LOC111479634 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.9e-44
Identity = 108/210 (51.43%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYIEDG 74
           EG EA V+S CP+Y+E+IQ                              WCTTMAY  DG
Sbjct: 502 EGHEAPVYSVCPHYKESIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADG 561

Query: 75  MWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA-------------------- 134
             LFSCGTS DGESYIVEWNESEGAVKRTYQGF KRSLG                     
Sbjct: 562 TRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 621

Query: 135 --------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFEN 156
                               ASPRI FNKD +L AVS NENGIKILANVDG++LL+ FEN
Sbjct: 622 FWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFEN 681

[Close]

BLAST of Lcy02g000030 vs. NCBI nr
Match: XP_022153396.1 (protein TOPLESS [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 4.4e-45
Identity = 114/223 (51.12%), Postives = 123/223 (55.16%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           +  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 499 YTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 558

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGESYIVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 559 ADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 618

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 158
                                  ASPRI FNKD +L AVS NENGIKILANVDGI+LL+ 
Sbjct: 619 SIKFWDMDNVQLLTTVDAEGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRT 678

[Close]

BLAST of Lcy02g000030 vs. NCBI nr
Match: PON51665.1 (Topless-like WD40 repeat containing protein [Parasponia andersonii])

HSP 1 Score: 190.7 bits (483), Expect = 9.9e-45
Identity = 110/213 (51.64%), Postives = 122/213 (57.28%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYIEDG 74
           EG EA V+S CP+Y+ENIQ                              WCTTMAY  DG
Sbjct: 500 EGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADG 559

Query: 75  MWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA-------------------- 134
             LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                     
Sbjct: 560 TRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 619

Query: 135 --------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFEN 159
                               ASPRI FNKD SL AVS+N+NGIK+LAN DG++LL+ FEN
Sbjct: 620 FWDMDNVQLLTTVDADGGLPASPRIRFNKDGSLLAVSANDNGIKVLANTDGLRLLRTFEN 679

[Close]

BLAST of Lcy02g000030 vs. NCBI nr
Match: XP_031739792.1 (protein TOPLESS [Cucumis sativus] >KGN52930.2 hypothetical protein Csa_014411 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-44
Identity = 109/213 (51.17%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           ++ EG EA VFS CP+Y+ENIQ                              WCTTMAY 
Sbjct: 499 YIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 558

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DG+SYIVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 559 ADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 618

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 156
                                  ASPRI FNKD +L AVS NENGIKILANVDGI+LL+ 
Sbjct: 619 SIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRT 678

[Close]

BLAST of Lcy02g000030 vs. NCBI nr
Match: PON90044.1 (Topless-related protein [Trema orientale])

HSP 1 Score: 188.7 bits (478), Expect = 3.8e-44
Identity = 111/211 (52.61%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-------------------WCTTMAYIEDGMWLFSCGTSN 74
           EG EA V+S CP+Y+ENIQ                    WCTTMAY  DG  LFSCGTS 
Sbjct: 500 EGHEAPVYSVCPHYKENIQIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSK 559

Query: 75  DGESYIVEWNESEGAVKRTYQGFLKRSLGA------------------------------ 134
           DGES+IVEWNESEGAVKRTYQGF KRSLG                               
Sbjct: 560 DGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLL 619

Query: 135 ----------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFENLSYDASRTSE 159
                     ASPRI FNKD SL AVS+N+NGIKILAN DG++LL+ FENLSYDASRTSE
Sbjct: 620 TTVDADGGLPASPRIRFNKDGSLLAVSANDNGIKILANTDGLRLLRTFENLSYDASRTSE 679

[Close]

BLAST of Lcy02g000030 vs. NCBI nr
Match: XP_023526905.1 (protein TPR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-43
Identity = 108/210 (51.43%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 15  EGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYIEDG 74
           EG EA V+S CP+Y+E+IQ                              WCTTMAY  DG
Sbjct: 502 EGHEAPVYSVCPHYKESIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADG 561

Query: 75  MWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA-------------------- 134
             LFSCGTS DGESYIVEWNESEGAVKRTYQGF KRSLG                     
Sbjct: 562 TRLFSCGTSKDGESYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 621

Query: 135 --------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQAFEN 156
                               ASPRI FNKD +L AVS NENGIKILANVDG++LL+ FEN
Sbjct: 622 FWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGVRLLRTFEN 681

[Close]

BLAST of Lcy02g000030 vs. TAIR 10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 96/220 (43.64%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           H  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 500 HTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 559

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 560 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 619

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 159
                                  ASPRI FNK+ SL AVS NEN IKI+AN DG++LL  
Sbjct: 620 SIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHT 679

[Close]

BLAST of Lcy02g000030 vs. TAIR 10
Match: AT1G15750.2 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 96/220 (43.64%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           H  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 500 HTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 559

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 560 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 619

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 159
                                  ASPRI FNK+ SL AVS NEN IKI+AN DG++LL  
Sbjct: 620 SIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHT 679

[Close]

BLAST of Lcy02g000030 vs. TAIR 10
Match: AT1G15750.3 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 96/220 (43.64%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           H  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 500 HTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 559

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 560 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 619

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 159
                                  ASPRI FNK+ SL AVS NEN IKI+AN DG++LL  
Sbjct: 620 SIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHT 679

[Close]

BLAST of Lcy02g000030 vs. TAIR 10
Match: AT1G15750.4 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 96/220 (43.64%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           H  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 500 HTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYS 559

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 560 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 619

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 159
                                  ASPRI FNK+ SL AVS NEN IKI+AN DG++LL  
Sbjct: 620 SIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHT 679

[Close]

BLAST of Lcy02g000030 vs. TAIR 10
Match: AT1G80490.1 (TOPLESS-related 1 )

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-35
Identity = 87/207 (42.03%), Postives = 104/207 (50.24%), Query Frame = 0


Query: 12  HLIEGQEAHVFSFCPNYRENIQC-----------------------------WCTTMAYI 71
           +  EG EA V+S CP+Y+ENIQ                              WCTTMAY 
Sbjct: 499 YTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYS 558

Query: 72  EDGMWLFSCGTSNDGESYIVEWNESEGAVKRTYQGFLKRSLGA----------------- 131
            DG  LFSCGTS DGES+IVEWNESEGAVKRTYQGF KRSLG                  
Sbjct: 559 ADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDF 618

Query: 132 -----------------------ASPRICFNKDWSLFAVSSNENGIKILANVDGIQLLQA 150
                                  ASPRI FNK+ SL AVS+N+N IK++AN DG++LL  
Sbjct: 619 SIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHT 678

The following BLAST results are available for this feature:

BLAST of Lcy02g000030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10NY2	2.5e-38	43.93	Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1	[more]
Q94AI7	3.9e-36	43.64	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]
Q0WV90	8.2e-34	42.03	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]
Q0J7U6	5.9e-32	40.95	Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TP...	[more]
Q9LRZ0	3.0e-28	36.67	Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2	[more]

BLAST of Lcy02g000030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKI7	2.2e-45	51.12	protein TOPLESS OS=Momordica charantia OX=3673 GN=LOC111020907 PE=4 SV=1	[more]
A0A2P5BSC8	4.8e-45	51.64	Topless-like WD40 repeat containing protein OS=Parasponia andersonii OX=3476 GN=...	[more]
A0A0A0KTH7	1.1e-44	51.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006320 PE=4 SV=1	[more]
A0A2P5EWW8	1.8e-44	52.61	Topless-related protein OS=Trema orientale OX=63057 GN=TorTPLR5 PE=4 SV=1	[more]
A0A6J1IYH0	6.9e-44	51.43	protein TOPLESS OS=Cucurbita maxima OX=3661 GN=LOC111479634 PE=4 SV=1	[more]

BLAST of Lcy02g000030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153396.1	4.4e-45	51.12	protein TOPLESS [Momordica charantia]	[more]
PON51665.1	9.9e-45	51.64	Topless-like WD40 repeat containing protein [Parasponia andersonii]	[more]
XP_031739792.1	2.2e-44	51.17	protein TOPLESS [Cucumis sativus] >KGN52930.2 hypothetical protein Csa_014411 [C...	[more]
PON90044.1	3.8e-44	52.61	Topless-related protein [Trema orientale]	[more]
XP_023526905.1	1.4e-43	51.43	protein TPR3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy02g000030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15750.1	2.8e-37	43.64	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.2	2.8e-37	43.64	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.3	2.8e-37	43.64	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.4	2.8e-37	43.64	Transducin family protein / WD-40 repeat family protein	[more]
AT1G80490.1	5.8e-35	42.03	TOPLESS-related 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 35..85
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 86..158
None	No IPR available	PANTHER	PTHR44083:SF7	TOPLESS-LIKE PROTEIN	coord: 86..158
None	No IPR available	PANTHER	PTHR44083:SF7	TOPLESS-LIKE PROTEIN	coord: 35..85
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 10..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g000030.1	Lcy02g000030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005515	protein binding