Lcy01g014540 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g014540
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionFormin-like protein
LocationChr01: 35985818 .. 35986417 (+)
RNA-Seq ExpressionLcy01g014540
SyntenyLcy01g014540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTACAGCACCCAAAGAATGGCGGGTGCAACGACAAACAGCAGAAGCTGCCCCCTGCTATCACTCGAAGAAGCATCAGCGATCATGGCGATCTCACTGGCCGAAGCATCAGGTGCGTACATAAACCCTGATGCAGTCAATCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTGAGCTGGTTGAGTGCTGGCTGTAGTATGTTGAACAGAACCCATGCTATGGCAGGAATAAGGGGTAGCAGAAGGGCTAAACCACGGTTGTCCTCGGCTGCTATCTCTGCAATTTGTTGGGCTGCAAAAGCAGGATCTGATGAGCTCAAGGTTGAGAAGACAGCTCCGGCGATGGCGGTGCTGGAGAGGAAGGTTGATAGGTTGGGATTTTCATTAGCTTTTGATGAGATCAGTCCTGTTGGAAGGTTCTGGAGAGAGAGGAGCGAGATGGGTTTGGGGATCGGCTTTGGGGTGTTGGGGTTTTTGGTGGAGTTGATGCTTGTGCACTTGACACTGAGCACTGCCATTGTAGCCATGGTTGCTGCCATTGAAGTTGATTTGCTTGTTTCTGTTGAACTAAGCTTTTGA

mRNA sequence

ATGTTGTACAGCACCCAAAGAATGGCGGGTGCAACGACAAACAGCAGAAGCTGCCCCCTGCTATCACTCGAAGAAGCATCAGCGATCATGGCGATCTCACTGGCCGAAGCATCAGGTGCGTACATAAACCCTGATGCAGTCAATCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTGAGCTGGTTGAGTGCTGGCTGTAGTATGTTGAACAGAACCCATGCTATGGCAGGAATAAGGGGTAGCAGAAGGGCTAAACCACGGTTGTCCTCGGCTGCTATCTCTGCAATTTGTTGGGCTGCAAAAGCAGGATCTGATGAGCTCAAGGTTGAGAAGACAGCTCCGGCGATGGCGGTGCTGGAGAGGAAGGTTGATAGGTTGGGATTTTCATTAGCTTTTGATGAGATCAGTCCTGTTGGAAGGTTCTGGAGAGAGAGGAGCGAGATGGGTTTGGGGATCGGCTTTGGGGTGTTGGGGTTTTTGGTGGAGTTGATGCTTGTGCACTTGACACTGAGCACTGCCATTGTAGCCATGGTTGCTGCCATTGAAGTTGATTTGCTTGTTTCTGTTGAACTAAGCTTTTGA

Coding sequence (CDS)

ATGTTGTACAGCACCCAAAGAATGGCGGGTGCAACGACAAACAGCAGAAGCTGCCCCCTGCTATCACTCGAAGAAGCATCAGCGATCATGGCGATCTCACTGGCCGAAGCATCAGGTGCGTACATAAACCCTGATGCAGTCAATCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTGAGCTGGTTGAGTGCTGGCTGTAGTATGTTGAACAGAACCCATGCTATGGCAGGAATAAGGGGTAGCAGAAGGGCTAAACCACGGTTGTCCTCGGCTGCTATCTCTGCAATTTGTTGGGCTGCAAAAGCAGGATCTGATGAGCTCAAGGTTGAGAAGACAGCTCCGGCGATGGCGGTGCTGGAGAGGAAGGTTGATAGGTTGGGATTTTCATTAGCTTTTGATGAGATCAGTCCTGTTGGAAGGTTCTGGAGAGAGAGGAGCGAGATGGGTTTGGGGATCGGCTTTGGGGTGTTGGGGTTTTTGGTGGAGTTGATGCTTGTGCACTTGACACTGAGCACTGCCATTGTAGCCATGGTTGCTGCCATTGAAGTTGATTTGCTTGTTTCTGTTGAACTAAGCTTTTGA

Protein sequence

MLYSTQRMAGATTNSRSCPLLSLEEASAIMAISLAEASGAYINPDAVNPPNPNPIITPLSLRILLSWLSAGCSMLNRTHAMAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMAVLERKVDRLGFSLAFDEISPVGRFWRERSEMGLGIGFGVLGFLVELMLVHLTLSTAIVAMVAAIEVDLLVSVELSF
Homology
BLAST of Lcy01g014540 vs. ExPASy TrEMBL
Match: A0A5J5AGF1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_034220 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.0e-31
Identity = 102/192 (53.12%), Postives = 115/192 (59.90%), Query Frame = 0

Query: 8   MAGATTNSRSCPLLSLEEASAIMAISLAEASGAYINPDAVNPPNPNPIITPLSLRILLSW 67
           MAG  TNSRSCPLLS   ASA +AISLAEA G  +NP A  PP+P+P++ PL LRI L W
Sbjct: 1   MAGLITNSRSCPLLS-AAASATIAISLAEACGVDMNPGAAKPPSPSPMMIPL-LRIRLIW 60

Query: 68  LSAGCSMLNRTHAMAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMAVLER 127
           L AG  ML  T AMAGI G++RA+PRLS +AISAIC AAKAGS ELKVEK APAMAV   
Sbjct: 61  LRAGWRMLKSTQAMAGIMGNKRARPRLSPSAISAICCAAKAGSQELKVEKMAPAMAVPAS 120

Query: 128 KVDRLGFSLAFDEISPVGRFWRERSEMGLGIGFGVLGFLVELMLVHLTLSTAIVAMVAAI 187
           +V   GF                                     VHL LS AIVAMVAAI
Sbjct: 121 EVVSDGFE------------------------------------VHLALSIAIVAMVAAI 154

Query: 188 EVDLLVSVELSF 200
           +V L+  VE  F
Sbjct: 181 DVALVGLVETGF 154

BLAST of Lcy01g014540 vs. ExPASy TrEMBL
Match: A0A151U8Y3 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019931 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 96/189 (50.79%), Postives = 112/189 (59.26%), Query Frame = 0

Query: 8   MAGATTNSRSCPLLSL---EEASAIMAISLAEASGAYINPDAVNP-PNPNPIITPLSLRI 67
           +AGATTN RSCP LSL     ASAI  IS AEASG    P+A  P P+P+PI TPL LR+
Sbjct: 1   IAGATTNRRSCPRLSLAAAAAASAIKPISPAEASGPDTRPEAPRPSPSPSPITTPLVLRM 60

Query: 68  LLSWLSAGCSMLNRTHAMAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMA 127
            LSWLSAGC ML RTHAMAGI GS  A+PRLS +AI AIC AAKA S   +V+  APA A
Sbjct: 61  RLSWLSAGCRMLKRTHAMAGIIGSSSARPRLSPSAIWAICCAAKAASQLPRVQNVAPASA 120

Query: 128 VLERKVDRLGFSLAFDEISPVGRFWRERS---EMGLGIGFGVLGFLVELMLVHLTLSTAI 187
           V+             D   P GR W ++    E       G+L  LV        ++ A+
Sbjct: 121 VV-------------DTWRPFGRLWGDKRVGFEGTASASLGLLWSLVGFRHFEFMMAIAV 176

Query: 188 VAMVAAIEV 190
           VAMVAAI V
Sbjct: 181 VAMVAAIVV 176

BLAST of Lcy01g014540 vs. ExPASy TrEMBL
Match: A0A151TKL7 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_023933 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 0

Query: 58  PLSLRILLSWLSAGCSMLNRTHAMAGIRGSRRAKPRLSS-AAISAICWAAKAGSDELKVE 117
           PL LR+  SW  AGC ML  THAMAGI GS  A PRLSS +A++AICWAAKA S   + E
Sbjct: 3   PLLLRMPFSWFRAGCRMLKSTHAMAGIMGSSSASPRLSSPSAMAAICWAAKAPSQLPRAE 62

Query: 118 KTAPAMAVLERKVDRLGFS--LAFDEISPVGRFWRERSEMGLGIGFGVLGFLVELMLVHL 177
           KTAPA+AV   +VD  G    + FD +S           +GLG+G G       L+L H 
Sbjct: 63  KTAPAIAV---EVDSFGSGRVVGFDGMS-----------LGLGLGLG------SLVLRHF 116

Query: 178 TLSTAIVAMVAAIE 189
            L  A+  +VAAI+
Sbjct: 123 ALIVAMADIVAAID 116

BLAST of Lcy01g014540 vs. ExPASy TrEMBL
Match: A0A2U1KWH4 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA556770 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-11
Identity = 60/112 (53.57%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 81  MAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMAVLERKVDRLGFSLAFDE 140
           MAG +G++ A PRLS +AISAICWAAKAGS ELKVE  APA+AV  + +      LA  E
Sbjct: 1   MAGTKGNKSAIPRLSPSAISAICWAAKAGSHELKVENIAPAIAVPVKVI------LACAE 60

Query: 141 -ISPVGRFWRERSEMGL-GIGFGVLGFLVELMLVHLTLSTAIVA-MVAAIEV 190
            +S +G  WR R EMGL G GF  L     L ++HL LS AIV   VAAI +
Sbjct: 61  VVSDLGSVWRVRREMGLFGSGFDGL-----LDVMHLALSMAIVVDSVAAIVI 101

BLAST of Lcy01g014540 vs. ExPASy TrEMBL
Match: A0A2T4CYL2 (Uncharacterized protein OS=cyanobacterium G8-9 OX=2137193 GN=C9925_02095 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 119 APAMAVLERKVDRLGFSLAFDEISPVGRFWRERSEMGLGIGFGVLGFLVELMLVHLTLST 178
           APAMAV     D+   S  F+ + P+GRFWRERSE G  +G   L  L  LML HL L  
Sbjct: 2   APAMAVPVSDDDKFNLSDDFEMVRPLGRFWRERSETGFMVGLVGLSLLDGLMLKHLALRI 61

Query: 179 AIVAMVAAI 188
           AIVAMVAAI
Sbjct: 62  AIVAMVAAI 70

BLAST of Lcy01g014540 vs. NCBI nr
Match: KAA8529680.1 (hypothetical protein F0562_034220 [Nyssa sinensis])

HSP 1 Score: 144.4 bits (363), Expect = 1.0e-30
Identity = 102/192 (53.12%), Postives = 115/192 (59.90%), Query Frame = 0

Query: 8   MAGATTNSRSCPLLSLEEASAIMAISLAEASGAYINPDAVNPPNPNPIITPLSLRILLSW 67
           MAG  TNSRSCPLLS   ASA +AISLAEA G  +NP A  PP+P+P++ PL LRI L W
Sbjct: 1   MAGLITNSRSCPLLS-AAASATIAISLAEACGVDMNPGAAKPPSPSPMMIPL-LRIRLIW 60

Query: 68  LSAGCSMLNRTHAMAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMAVLER 127
           L AG  ML  T AMAGI G++RA+PRLS +AISAIC AAKAGS ELKVEK APAMAV   
Sbjct: 61  LRAGWRMLKSTQAMAGIMGNKRARPRLSPSAISAICCAAKAGSQELKVEKMAPAMAVPAS 120

Query: 128 KVDRLGFSLAFDEISPVGRFWRERSEMGLGIGFGVLGFLVELMLVHLTLSTAIVAMVAAI 187
           +V   GF                                     VHL LS AIVAMVAAI
Sbjct: 121 EVVSDGFE------------------------------------VHLALSIAIVAMVAAI 154

Query: 188 EVDLLVSVELSF 200
           +V L+  VE  F
Sbjct: 181 DVALVGLVETGF 154

BLAST of Lcy01g014540 vs. NCBI nr
Match: KYP75732.1 (hypothetical protein KK1_019931, partial [Cajanus cajan])

HSP 1 Score: 135.2 bits (339), Expect = 6.2e-28
Identity = 96/189 (50.79%), Postives = 112/189 (59.26%), Query Frame = 0

Query: 8   MAGATTNSRSCPLLSL---EEASAIMAISLAEASGAYINPDAVNP-PNPNPIITPLSLRI 67
           +AGATTN RSCP LSL     ASAI  IS AEASG    P+A  P P+P+PI TPL LR+
Sbjct: 1   IAGATTNRRSCPRLSLAAAAAASAIKPISPAEASGPDTRPEAPRPSPSPSPITTPLVLRM 60

Query: 68  LLSWLSAGCSMLNRTHAMAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMA 127
            LSWLSAGC ML RTHAMAGI GS  A+PRLS +AI AIC AAKA S   +V+  APA A
Sbjct: 61  RLSWLSAGCRMLKRTHAMAGIIGSSSARPRLSPSAIWAICCAAKAASQLPRVQNVAPASA 120

Query: 128 VLERKVDRLGFSLAFDEISPVGRFWRERS---EMGLGIGFGVLGFLVELMLVHLTLSTAI 187
           V+             D   P GR W ++    E       G+L  LV        ++ A+
Sbjct: 121 VV-------------DTWRPFGRLWGDKRVGFEGTASASLGLLWSLVGFRHFEFMMAIAV 176

Query: 188 VAMVAAIEV 190
           VAMVAAI V
Sbjct: 181 VAMVAAIVV 176

BLAST of Lcy01g014540 vs. NCBI nr
Match: KYP67588.1 (hypothetical protein KK1_023933 [Cajanus cajan])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-14
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 0

Query: 58  PLSLRILLSWLSAGCSMLNRTHAMAGIRGSRRAKPRLSS-AAISAICWAAKAGSDELKVE 117
           PL LR+  SW  AGC ML  THAMAGI GS  A PRLSS +A++AICWAAKA S   + E
Sbjct: 3   PLLLRMPFSWFRAGCRMLKSTHAMAGIMGSSSASPRLSSPSAMAAICWAAKAPSQLPRAE 62

Query: 118 KTAPAMAVLERKVDRLGFS--LAFDEISPVGRFWRERSEMGLGIGFGVLGFLVELMLVHL 177
           KTAPA+AV   +VD  G    + FD +S           +GLG+G G       L+L H 
Sbjct: 63  KTAPAIAV---EVDSFGSGRVVGFDGMS-----------LGLGLGLG------SLVLRHF 116

Query: 178 TLSTAIVAMVAAIE 189
            L  A+  +VAAI+
Sbjct: 123 ALIVAMADIVAAID 116

BLAST of Lcy01g014540 vs. NCBI nr
Match: PWA41070.1 (hypothetical protein CTI12_AA556770 [Artemisia annua])

HSP 1 Score: 78.2 bits (191), Expect = 9.0e-11
Identity = 60/112 (53.57%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 81  MAGIRGSRRAKPRLSSAAISAICWAAKAGSDELKVEKTAPAMAVLERKVDRLGFSLAFDE 140
           MAG +G++ A PRLS +AISAICWAAKAGS ELKVE  APA+AV  + +      LA  E
Sbjct: 1   MAGTKGNKSAIPRLSPSAISAICWAAKAGSHELKVENIAPAIAVPVKVI------LACAE 60

Query: 141 -ISPVGRFWRERSEMGL-GIGFGVLGFLVELMLVHLTLSTAIVA-MVAAIEV 190
            +S +G  WR R EMGL G GF  L     L ++HL LS AIV   VAAI +
Sbjct: 61  VVSDLGSVWRVRREMGLFGSGFDGL-----LDVMHLALSMAIVVDSVAAIVI 101

BLAST of Lcy01g014540 vs. NCBI nr
Match: KAF3526374.1 (hypothetical protein F2Q69_00050753 [Brassica cretica])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-07
Identity = 49/95 (51.58%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 74  MLNRTHAMAGIRGSRRAKPRLS---SAAISAICWAAKAGSDELKVEKTAPAMAVLERKVD 133
           ML  TH +AG  G  RA PRLS   +AA SAI WAAKAGS++L+VEKTAPA AVL    +
Sbjct: 1   MLKSTHPIAGTIGRSRASPRLSLPPAAASSAIWWAAKAGSEQLRVEKTAPARAVLVTARE 60

Query: 134 RLGFSLAFDEISPVGRFWRE-RSEMGLGIGFGVLG 165
            +GF         VGR  +    EMGL + FG LG
Sbjct: 61  TVGF-------GGVGRVMKGFDEEMGL-LWFGDLG 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5J5AGF15.0e-3153.13Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_034220 PE=4 SV=1[more]
A0A151U8Y33.0e-2850.79Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019931 PE=4 S... [more]
A0A151TKL72.5e-1447.76Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_023933 PE=4 SV=1[more]
A0A2U1KWH44.4e-1153.57Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA556770 PE=4 SV=1[more]
A0A2T4CYL21.9e-0655.07Uncharacterized protein OS=cyanobacterium G8-9 OX=2137193 GN=C9925_02095 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAA8529680.11.0e-3053.13hypothetical protein F0562_034220 [Nyssa sinensis][more]
KYP75732.16.2e-2850.79hypothetical protein KK1_019931, partial [Cajanus cajan][more]
KYP67588.15.1e-1447.76hypothetical protein KK1_023933 [Cajanus cajan][more]
PWA41070.19.0e-1153.57hypothetical protein CTI12_AA556770 [Artemisia annua][more]
KAF3526374.12.1e-0751.58hypothetical protein F2Q69_00050753 [Brassica cretica][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g014540.1Lcy01g014540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane