Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGCCTTGTTTTTTGTAAGGCAAAGATCGAGGAGGCTTGGTTCTTTAAGAAAATCCTTGAAAGGTATGAGAAAGCTTCTGGTCAAGGAGGCTTGGTTCTTGAAGAAAATCCTTGAAAGGTATGAGAAAGCTACTGGTCAAATGGTTAATTATAACAAGTCTTCCATGTTTATTTTGCCGAATGTGTCTAATGAATTTAGCTCTGTTCTGGCTAATATTTTAAAAATACCTGTGGTGGATAGTTTGGGTGTGTATTTGGGTGTTCCATCCTCTTTCTCTCGTAAAAGATGTGATGATTTTAGATCTATCAAACAGATGCTCCAAGGTTGGAAAGGTAATCTCTTTTCCATAGGCGGCAAAGAGGTGCTTATTAAGAGTGTAGCACAAGTTATACCTACGTATTTGATGAGTTGCTTTAGATTGCCACAATCAGTGTGTCATGAGATTCACAGGATGATGGCTAGATTTTGGTGGGGGACTATAAAATCAAGAAAGAAGTTGCACTGGAAGAAATGGGAGTTTATGTGTCTTCCAAAGGAGCTGGGTGGTTTGAATTTCAGAGACTTGAGCTCCTTTAATCGTTCCCTTTTAGCTATGCAGGTGTGGCGTTTGTTTAAACATCCCAATTATTAGCCTCTCGTGTTATATCTGGGCGATATGCATCCCAAACATCTTTGCTAACGACACCATCTAAATCTAATAGTTCCTTCTTTTGGAAAGGTTTTGTCTAGGCTCGGGAATTGATTCTTCGGGGTATTCGAAAGAGGGTTGGGAATGGTACTTCTATTCGATTCTATGAAGATCCTTGGCTTTCAAAGGAAATTAATTTCAAGCCCATGAGACTTCATAATGCGGGGGTGCAAGATGCGGTAATGGTAGCGGATGTTATAACACCATCGAATGGGTGGGATATGGAAAAAATAGGAGATATGGTGCCATATGAGGATGCACAGTTGATCCAATCAATACCAATCGGTGGTCCAAATGAGGAGGATATTTGGATATGGCATTATTCTCGTAATGGAGATTATACAACAAAGAGTGGATACAGCTCGAAATGA
mRNA sequence
ATGATAGCCTTGTTTTTTGTAAGGCAAAGATCGAGGAGGCTTGGTTCTTTAAGAAAATCCTTGAAAGGTATGAGAAAGCTTCTGGTCAAGGAGGCTTGGTTCTTGAAGAAAATCCTTGAAAGGTATGAGAAAGCTACTGGTCAAATGGTTAATTATAACAAGTCTTCCATGTTTATTTTGCCGAATGTGTCTAATGAATTTAGCTCTGTTCTGGCTAATATTTTAAAAATACCTGTGGTGGATAGTTTGGGTGTGTATTTGGGTGTTCCATCCTCTTTCTCTCGTAAAAGATGTGATGATTTTAGATCTATCAAACAGATGCTCCAAGGTTGGAAAGGTAATCTCTTTTCCATAGGCGGCAAAGAGGTGCTTATTAAGAGTGTAGCACAAGTTATACCTACGTATTTGATGAGTTGCTTTAGATTGCCACAATCAGTGTGTCATGAGATTCACAGGATGATGGCTAGATTTTGGTGGGGGACTATAAAATCAAGAAAGAAGTTGCACTGGAAGAAATGGGAGTTTATGTGTCTTCCAAAGGAGCTGGGTGGTTTGAATTTCAGAGACTTGAGCTCCTTTAATCGTTCCCTTTTAGCTATGCAGGCTCGGGAATTGATTCTTCGGGGTATTCGAAAGAGGGTTGGGAATGGTACTTCTATTCGATTCTATGAAGATCCTTGGCTTTCAAAGGAAATTAATTTCAAGCCCATGAGACTTCATAATGCGGGGGTGCAAGATGCGGTAATGGTAGCGGATGTTATAACACCATCGAATGGGTGGGATATGGAAAAAATAGGAGATATGGTGCCATATGAGGATGCACAGTTGATCCAATCAATACCAATCGGTGGTCCAAATGAGGAGGATATTTGGATATGGCATTATTCTCGTAATGGAGATTATACAACAAAGAGTGGATACAGCTCGAAATGA
Coding sequence (CDS)
ATGATAGCCTTGTTTTTTGTAAGGCAAAGATCGAGGAGGCTTGGTTCTTTAAGAAAATCCTTGAAAGGTATGAGAAAGCTTCTGGTCAAGGAGGCTTGGTTCTTGAAGAAAATCCTTGAAAGGTATGAGAAAGCTACTGGTCAAATGGTTAATTATAACAAGTCTTCCATGTTTATTTTGCCGAATGTGTCTAATGAATTTAGCTCTGTTCTGGCTAATATTTTAAAAATACCTGTGGTGGATAGTTTGGGTGTGTATTTGGGTGTTCCATCCTCTTTCTCTCGTAAAAGATGTGATGATTTTAGATCTATCAAACAGATGCTCCAAGGTTGGAAAGGTAATCTCTTTTCCATAGGCGGCAAAGAGGTGCTTATTAAGAGTGTAGCACAAGTTATACCTACGTATTTGATGAGTTGCTTTAGATTGCCACAATCAGTGTGTCATGAGATTCACAGGATGATGGCTAGATTTTGGTGGGGGACTATAAAATCAAGAAAGAAGTTGCACTGGAAGAAATGGGAGTTTATGTGTCTTCCAAAGGAGCTGGGTGGTTTGAATTTCAGAGACTTGAGCTCCTTTAATCGTTCCCTTTTAGCTATGCAGGCTCGGGAATTGATTCTTCGGGGTATTCGAAAGAGGGTTGGGAATGGTACTTCTATTCGATTCTATGAAGATCCTTGGCTTTCAAAGGAAATTAATTTCAAGCCCATGAGACTTCATAATGCGGGGGTGCAAGATGCGGTAATGGTAGCGGATGTTATAACACCATCGAATGGGTGGGATATGGAAAAAATAGGAGATATGGTGCCATATGAGGATGCACAGTTGATCCAATCAATACCAATCGGTGGTCCAAATGAGGAGGATATTTGGATATGGCATTATTCTCGTAATGGAGATTATACAACAAAGAGTGGATACAGCTCGAAATGA
Protein sequence
MIALFFVRQRSRRLGSLRKSLKGMRKLLVKEAWFLKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFSRKRCDDFRSIKQMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEIHRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQARELILRGIRKRVGNGTSIRFYEDPWLSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGGPNEEDIWIWHYSRNGDYTTKSGYSSK
Homology
BLAST of Lcy01g008180 vs. ExPASy Swiss-Prot
Match:
P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 3.7e-14
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = 0
Query: 132 IPTYLMSCFRLPQSVCHEIHRMMARFWWGTIKSRKKLHWKKWEFMCLPKE-LGGLNFRDL 191
+P Y MSCFRL + +C ++ M FWW + ++++K+ W W+ +C KE GGL FRDL
Sbjct: 3 LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62
Query: 192 SSFNRSLLAMQA--------------------------------------------RELI 238
FN++LLA Q+ REL+
Sbjct: 63 GWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELL 122
BLAST of Lcy01g008180 vs. ExPASy TrEMBL
Match:
A0A803PM68 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 234.6 bits (597), Expect = 5.7e-58
Identity = 125/323 (38.70%), Postives = 174/323 (53.87%), Query Frame = 0
Query: 33 WFLKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSS 92
WF +++LE+Y A+GQ+VN++KS M VS+ S LA ++ + VVD+ G YLG+PS
Sbjct: 38 WF-QELLEKYSIASGQVVNFHKSEMCFGRTVSDPLKSQLAALMGVKVVDNYGKYLGLPSF 97
Query: 93 FSRKRCDDFRSIK----QMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCH 152
R + F IK L+GWKG+ FS GKE+LIK++ Q IPTY MSCFRLP+ +
Sbjct: 98 VGRTKKQHFEFIKTKVWNKLKGWKGSFFSAAGKEILIKAIVQAIPTYTMSCFRLPKKTIN 157
Query: 153 EIHRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQ------- 212
IH M ARFWWG+ + K+HW KW +C KE GGL FRDL FN++LLA Q
Sbjct: 158 SIHSMAARFWWGSSEKDAKIHWCKWSTLCKHKEQGGLGFRDLGLFNQALLAKQIWRCIRY 217
Query: 213 -------------------------------------ARELILRGIRKRVGNGTSIRFYE 272
+++I +G R R+GNG S+R E
Sbjct: 218 PNSLCSKVLKASYFPNVGVLEAKSGNHASFVWRSLVWGKKIIQKGYRWRIGNGNSVRVLE 277
Query: 273 DPWLSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGG 308
DPWL + + FK + + + V D++ + WD E I DA+LI +P
Sbjct: 278 DPWLPRPVTFKV--YDKPSLPEGMYVVDLMKGNGEWDEEFIRAFFNPTDAELILGMPTSE 337
BLAST of Lcy01g008180 vs. ExPASy TrEMBL
Match:
A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 234.2 bits (596), Expect = 7.4e-58
Identity = 124/320 (38.75%), Postives = 172/320 (53.75%), Query Frame = 0
Query: 36 KKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFSR 95
+++L +Y A+GQ+VNY+KS NV+ E S+LA IL + V++ G YLG+PS R
Sbjct: 1002 QQLLSKYTAASGQLVNYHKSEACFGRNVTAEVRSLLAGILGVREVENHGKYLGLPSFVGR 1061
Query: 96 KRCDDFRSIKQ----MLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEIH 155
+ + IK ++GWK ++FS+ GKEVLIK++ Q IPTY MSCF+LP+ +H
Sbjct: 1062 NKREFLDEIKNKVWAKMKGWKTSMFSVAGKEVLIKAIVQAIPTYTMSCFKLPKKTISSLH 1121
Query: 156 RMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQ---------- 215
RM +RFWWG+ KK+HW KW ++C PK+ GGL FRDL FN++LLA Q
Sbjct: 1122 RMASRFWWGSSDKEKKIHWCKWRYLCRPKDKGGLGFRDLGMFNQALLAKQIWRCLRHPQL 1181
Query: 216 ----------------------------------ARELILRGIRKRVGNGTSIRFYEDPW 275
++LIL+G R RVGNG S+R EDPW
Sbjct: 1182 LCSRVLKASYFPRKGVLEAGCGANASFVSRSLVWGKKLILKGYRWRVGNGESVRVLEDPW 1241
Query: 276 LSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGGPNE 308
L + + FK + + V D+ WD I + DA LI IP +
Sbjct: 1242 LPRPVTFKV--YDQPSLPANLYVTDLKMADGQWDEGSIRSIFNPTDADLILGIPCSDWDF 1301
BLAST of Lcy01g008180 vs. ExPASy TrEMBL
Match:
A0A803Q154 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 234.2 bits (596), Expect = 7.4e-58
Identity = 126/324 (38.89%), Postives = 174/324 (53.70%), Query Frame = 0
Query: 36 KKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFSR 95
K +L++Y A+GQ VN+ KS M V S LA +L + VV++ G YLG+PS F R
Sbjct: 168 KDLLDKYTMASGQAVNFTKSEMCFGALVDRSLRSRLAALLDVKVVNNYGKYLGLPSFFGR 227
Query: 96 KRCDDFRSIK----QMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEIH 155
+ + F IK Q ++GWKG++FS+ GKEVLIK++ Q +P Y MSCF+LP+S +H
Sbjct: 228 SKKELFEVIKNRVWQKVRGWKGSMFSVAGKEVLIKAILQAMPAYTMSCFQLPKSTIKSLH 287
Query: 156 RMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQ---------- 215
M ARFWWG+ +KK+HW KW +MC PKE GGL FRDL FN++LLA Q
Sbjct: 288 SMGARFWWGSSARQKKVHWCKWNYMCKPKEKGGLGFRDLGLFNQALLAKQVWRCLRSPTL 347
Query: 216 ----------------------------------ARELILRGIRKRVGNGTSIRFYEDPW 275
++L+L+G R R+G+G +R DPW
Sbjct: 348 LSSRVLKACYYPGVSVLDAKCGSHSSFMWRSMMWGKKLLLKGYRWRIGDGNGVRVLNDPW 407
Query: 276 LSKEINF----KPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIG 308
L + + F +P H + V D+ GWD I EDA+LI ++P G
Sbjct: 408 LPRPVTFCVYDRPEFPHE------LYVVDLKLADGGWDEGFIKAHFNEEDAELILNLPSG 467
BLAST of Lcy01g008180 vs. ExPASy TrEMBL
Match:
A0A803QA44 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 9.7e-58
Identity = 122/282 (43.26%), Postives = 166/282 (58.87%), Query Frame = 0
Query: 30 KEAWFLKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGV 89
KE K +L+ Y KA GQMVN++KS M V LA+I+ + VV++ G YLG+
Sbjct: 41 KECEGFKTLLDNYAKAYGQMVNFHKSEMCFGKRVPGGVRDRLASIMGVRVVENYGKYLGL 100
Query: 90 PSSFSRKRCDDFRSIK----QMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQS 149
PS R + + F I+ ++GWK +LFS+ GKEVLIK+ Q I TY MS F LP+S
Sbjct: 101 PSFVGRTKKEVFAGIRNKVWNKVRGWKASLFSVAGKEVLIKATLQAILTYTMSYFLLPKS 160
Query: 150 VCHEIHRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQAREL 209
+ + +HRM ARFWWG+ + K+HW KW ++C PKE GGL FRDL FN++LLA Q
Sbjct: 161 MINSLHRMAARFWWGSSEKNNKIHWSKWSYLCKPKEKGGLGFRDLGLFNKALLAKQVWRK 220
Query: 210 ILRGIRKRVGNGTSIRFYEDPWLSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKI 269
I+ G R R+GNG S+R EDP L ++FK V + V D+ WD I
Sbjct: 221 IM-GYRWRIGNGNSVRVLEDPCLPHPVSFK--IFDPPPVPSPLYVTDLKNADGSWDAMFI 280
Query: 270 GDMVPYEDAQLIQSIPIGGPNEEDIWIWHYSRNGDYTTKSGY 308
+ EDA+LI IP + ED +WHY +NG+Y+ +GY
Sbjct: 281 NAVFNREDAELILGIPSTDCDLEDKIMWHYRKNGEYSVSNGY 319
BLAST of Lcy01g008180 vs. ExPASy TrEMBL
Match:
A0A803Q0L5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 127/320 (39.69%), Postives = 173/320 (54.06%), Query Frame = 0
Query: 36 KKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFSR 95
K +LE Y A+GQ+VNY+KS + NVS E LA + + VD+ G YLG+PS R
Sbjct: 281 KSLLELYSAASGQLVNYHKSEVCFGRNVSREVRQQLALFMGVRQVDNHGKYLGLPSFVGR 340
Query: 96 KRCDDFRSIKQ----MLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEIH 155
+ + IK ++GWK ++FS+ GKEVLIK+V Q IPTY MSCFRL + IH
Sbjct: 341 NKKEFLDQIKNKVWAKMKGWKSSMFSMAGKEVLIKAVVQAIPTYAMSCFRLSKKTISSIH 400
Query: 156 RMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQ---------- 215
RM ARFWWG+ + KK+HW KW +C PK+ GGL FRDL FN+++LA Q
Sbjct: 401 RMAARFWWGSSEKDKKIHWCKWAHLCKPKDKGGLGFRDLGFFNQAILAKQVWRCIRCLNN 460
Query: 216 ----------------------------------ARELILRGIRKRVGNGTSIRFYEDPW 275
+++I+ G R RVGNG ++R EDPW
Sbjct: 461 LCSRVLKASYFPHKTILEAKSGACASFVWRSLIWGKKVIVNGYRWRVGNGENVRVLEDPW 520
Query: 276 LSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGGPNE 308
L + + FK + ++VAD+ WD I ++ +DA+LI S+P G
Sbjct: 521 LPRPVTFK--IYDKPPLPANMVVADMKHGDGSWDSIFIQEVFNSDDAELILSMPSTGWEL 580
BLAST of Lcy01g008180 vs. NCBI nr
Match:
XP_017250619.1 (PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus])
HSP 1 Score: 223.0 bits (567), Expect = 3.5e-54
Identity = 111/321 (34.58%), Postives = 172/321 (53.58%), Query Frame = 0
Query: 35 LKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFS 94
++ I Y + +GQM+N+NKS +F PN +N+ S L + +++ YLG+P
Sbjct: 914 IQNIFSLYSECSGQMINFNKSLLFFSPNTTNDVRSTFMVSLNMQTTEAIETYLGLPMLGG 973
Query: 95 RKRCDDFRSIKQ----MLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEI 154
+ + FRSIK+ L W+ ++FS GGKE+L+K+V Q +PTY MSCF++P+ C EI
Sbjct: 974 KNKKILFRSIKEKVWARLHSWRPDVFSQGGKEILLKAVIQAMPTYFMSCFKIPEGQCQEI 1033
Query: 155 HRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQA-------- 214
+++AR+WWG++ S++K+HW+ W + PK GGL FR +N++LLA QA
Sbjct: 1034 EKLLARYWWGSVHSKRKIHWRAWTKISTPKSEGGLGFRTFIHYNQALLAKQAWRILIYPT 1093
Query: 215 ------------------------------------RELILRGIRKRVGNGTSIRFYEDP 274
+ L++ G+R+R+GNG S R ++DP
Sbjct: 1094 SLLSQVLQAKYFASSSFLDSKEGRCPSLTWRSIVWGKTLLIEGLRRRIGNGQSTRAFKDP 1153
Query: 275 WLSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGGPN 308
WL++ +F P+ G ++ V V + IT W+ E I D QLI IP+ +
Sbjct: 1154 WLARPPSFLPI---TRGSEEEVKVVEYIT-GGTWNRELIRQTFLSPDIQLILEIPLSRFD 1213
BLAST of Lcy01g008180 vs. NCBI nr
Match:
PRQ55763.1 (putative RNA-directed DNA polymerase [Rosa chinensis])
HSP 1 Score: 217.6 bits (553), Expect = 1.5e-52
Identity = 112/321 (34.89%), Postives = 168/321 (52.34%), Query Frame = 0
Query: 35 LKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFS 94
LK++ E+YEKA+GQM+N++KS + NV LA L++ VD YLG+P+ S
Sbjct: 550 LKRMFEQYEKASGQMINFDKSCVSFSKNVKRAKQDELAASLRVLRVDKHDKYLGLPTEIS 609
Query: 95 RKRCDDF----RSIKQMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEI 154
+ + F +++ QGW+ S GKE++IK+VAQ IPTY+MSCF LP+ +C E+
Sbjct: 610 YSKSEAFNFLSEKVRKRTQGWRAKTLSAAGKEIMIKAVAQSIPTYVMSCFELPKHLCLEM 669
Query: 155 HRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQ--------- 214
HR+MA+FWWG + KK+HW WE +C+PK GGL FR++ FN++LLA Q
Sbjct: 670 HRLMAQFWWGDKSNDKKIHWLAWEKLCVPKAEGGLGFRNMVQFNQALLAKQGWRIIQNPN 729
Query: 215 -----------------------------------ARELILRGIRKRVGNGTSIRFYEDP 274
REL+ +G+R +VGNG+ I + D
Sbjct: 730 SLLARLYKAKYFPNCDFMKAEASSGSSYAWKSILFGRELLRKGLRLQVGNGSQIAVWTDQ 789
Query: 275 WLSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGGPN 308
WL +F+P+ G++ + + N W M + ++ + LI SIP+
Sbjct: 790 WLPLPHSFRPISTPKEGLETLRVDELIDQEENEWHMFLLQELFMPLEVNLIASIPLSLRR 849
BLAST of Lcy01g008180 vs. NCBI nr
Match:
XP_024172304.2 (uncharacterized protein LOC112178381 [Rosa chinensis])
HSP 1 Score: 217.2 bits (552), Expect = 1.9e-52
Identity = 114/322 (35.40%), Postives = 174/322 (54.04%), Query Frame = 0
Query: 35 LKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFS 94
+K+IL+ YE A+GQ VN+ KS + NV LA + + VD YLG+P+ S
Sbjct: 716 VKEILKWYEDASGQQVNFQKSKISFSKNVDIGCQEELAEVFGVERVDKHDKYLGLPTEVS 775
Query: 95 RKRCDDFRSI----KQMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEI 154
+ + F+ I + ++ WK S+ GKEV+IKSV Q +PTY+MSCF LP+ +C E+
Sbjct: 776 YSKTEAFQFIMEKTRNKMKNWKDKTLSVAGKEVMIKSVVQSVPTYVMSCFELPKHLCQEM 835
Query: 155 HRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLA----------- 214
HR MA FWWG + +K+HW W+ MC+PKE GGL FR++ FN++LLA
Sbjct: 836 HRCMAEFWWGDSEKGRKIHWLAWDKMCVPKEKGGLGFRNMEYFNQALLAKQGWRILRHPD 895
Query: 215 ---------------------------------MQARELILRGIRKRVGNGTSIRFYEDP 274
M+ + L+ +G+R +VG+GT I + DP
Sbjct: 896 SLLGKTLKAKYFPNNDFIHASVNQGDSYTWRSLMKGKVLLEKGLRFQVGSGTRISVWFDP 955
Query: 275 WLSKEINFKPMRLHNAGVQDAVMVADVITP-SNGWDMEKIGDMVPYEDAQLIQSIPIGGP 308
W+ + +F+P G++D + VAD+I P S W ++ + ++ ++ LI+ IP+
Sbjct: 956 WIPRPYSFRPYSTVMEGLED-LTVADLIDPDSKDWMVDWLEELFFADEVDLIRKIPLSLR 1015
BLAST of Lcy01g008180 vs. NCBI nr
Match:
XP_024156142.1 (uncharacterized protein LOC112164137 [Rosa chinensis])
HSP 1 Score: 216.5 bits (550), Expect = 3.3e-52
Identity = 115/322 (35.71%), Postives = 173/322 (53.73%), Query Frame = 0
Query: 35 LKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFS 94
+K+IL+ YE A+GQ VN+ KS + NV LA + + VD YLG+P+ S
Sbjct: 508 VKEILKWYEDASGQQVNFQKSKISFSKNVDIGCQEELAEVFGVERVDKHDKYLGLPTKVS 567
Query: 95 RKRCDDFRSI----KQMLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEI 154
+ + F+ I K ++ WK S+ GKEV+IKSV Q +PTY+MSCF LP+ +C E+
Sbjct: 568 YSKIEAFQFIMEKTKNKMKNWKDKTLSVAGKEVMIKSVVQSVPTYVMSCFELPKHLCQEM 627
Query: 155 HRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLA----------- 214
HR MA FWWG + +K+HW W+ MC+PKE GGL FR++ FN++LLA
Sbjct: 628 HRCMAEFWWGDSEKGRKIHWLAWDKMCVPKEEGGLGFRNMEYFNQALLAKQGWRILRHPD 687
Query: 215 ---------------------------------MQARELILRGIRKRVGNGTSIRFYEDP 274
M+ + L+ +G+R +VG GT I + DP
Sbjct: 688 SLLGKTLKAKYFPNNDFIHASVNQGDSYTWRSLMKGKVLLEKGLRFQVGLGTRISVWFDP 747
Query: 275 WLSKEINFKPMRLHNAGVQDAVMVADVITP-SNGWDMEKIGDMVPYEDAQLIQSIPIGGP 308
W+ + +F+P G++D + VAD+I P S W ++ + ++ ++ LI+ IP+
Sbjct: 748 WIPRPYSFRPYSTVMEGLED-LTVADLIDPDSKDWMVDWLEELFFADEVDLIRKIPLSLR 807
BLAST of Lcy01g008180 vs. NCBI nr
Match:
XP_030479133.1 (uncharacterized protein LOC115696372 [Cannabis sativa])
HSP 1 Score: 216.5 bits (550), Expect = 3.3e-52
Identity = 117/322 (36.34%), Postives = 162/322 (50.31%), Query Frame = 0
Query: 35 LKKILERYEKATGQMVNYNKSSMFILPNVSNEFSSVLANILKIPVVDSLGVYLGVPSSFS 94
+K+ L+ Y +A+GQ +N +KS M PN + IL +P+ + YLG+P+
Sbjct: 663 IKRALDIYHRASGQRLNADKSVMSFSPNTPIAVQNSFQQILGMPICECHEAYLGLPAYSE 722
Query: 95 RKRCDDFRSIKQ----MLQGWKGNLFSIGGKEVLIKSVAQVIPTYLMSCFRLPQSVCHEI 154
R + F +IK+ ++ W +FSIGGKEVL+K+V Q IPTY MSCFRLP +C+EI
Sbjct: 723 RDKSQLFSNIKEKIWKLMHAWNDKIFSIGGKEVLLKAVVQSIPTYAMSCFRLPVKLCNEI 782
Query: 155 HRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLSSFNRSLLAMQA-------- 214
MMA+FWWG+ KK+HWKKW F+C K GG+ FR FN++LLA QA
Sbjct: 783 EAMMAKFWWGSSSDNKKIHWKKWRFLCKSKGDGGMGFRSFVHFNQALLAKQAWRIFQDPT 842
Query: 215 ------------------------------------RELILRGIRKRVGNGTSIRFYEDP 274
REL+++G+R +VG G +IR D
Sbjct: 843 SLLSRVLKGHYFSQNDFMTARGGGLSSLTWQGIVWGRELLVKGLRLKVGTGNNIRCAVDS 902
Query: 275 WLSKEINFKPMRLHNAGVQDAVMVADVITPSNGWDMEKIGDMVPYEDAQLIQSIPIGGPN 309
W+ FKP A VAD IT + W++E + D I IP+
Sbjct: 903 WIPGHKGFKPYCYTGAHTNH---VADYITATREWNIECLQSDFSTPDVDNILKIPLSFLP 962
BLAST of Lcy01g008180 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 111.7 bits (278), Expect = 1.1e-24
Identity = 65/227 (28.63%), Postives = 101/227 (44.49%), Query Frame = 0
Query: 132 IPTYLMSCFRLPQSVCHEIHRMMARFWWGTIKSRKKLHWKKWEFMCLPKELGGLNFRDLS 191
+PTY M+CF LP++VC +I ++A FWW + K +HWK W+ + K GG+ F+D+
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 192 SFNRSLLAMQ--------------------------------------------ARELIL 251
+FN +LL Q ++E++
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILR 122
Query: 252 RGIRKRVGNGTSIRFYEDPWLSKEINFKPMRLHN------AGVQDAVMVADVITPS-NGW 308
+G R VGNG I + WL + +R+ A V + V+D+I S W
Sbjct: 123 QGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREW 182
BLAST of Lcy01g008180 vs. TAIR 10
Match:
ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 80.5 bits (197), Expect = 2.6e-15
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = 0
Query: 132 IPTYLMSCFRLPQSVCHEIHRMMARFWWGTIKSRKKLHWKKWEFMCLPKE-LGGLNFRDL 191
+P Y MSCFRL + +C ++ M FWW + ++++K+ W W+ +C KE GGL FRDL
Sbjct: 3 LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62
Query: 192 SSFNRSLLAMQA--------------------------------------------RELI 238
FN++LLA Q+ REL+
Sbjct: 63 GWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELL 122
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P93295 | 3.7e-14 | 28.48 | Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A803PM68 | 5.7e-58 | 38.70 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q1K6 | 7.4e-58 | 38.75 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q154 | 7.4e-58 | 38.89 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QA44 | 9.7e-58 | 43.26 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q0L5 | 1.7e-57 | 39.69 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_017250619.1 | 3.5e-54 | 34.58 | PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus] | [more] |
PRQ55763.1 | 1.5e-52 | 34.89 | putative RNA-directed DNA polymerase [Rosa chinensis] | [more] |
XP_024172304.2 | 1.9e-52 | 35.40 | uncharacterized protein LOC112178381 [Rosa chinensis] | [more] |
XP_024156142.1 | 3.3e-52 | 35.71 | uncharacterized protein LOC112164137 [Rosa chinensis] | [more] |
XP_030479133.1 | 3.3e-52 | 36.34 | uncharacterized protein LOC115696372 [Cannabis sativa] | [more] |
Match Name | E-value | Identity | Description | |
AT4G29090.1 | 1.1e-24 | 28.63 | Ribonuclease H-like superfamily protein | [more] |
ATMG00310.1 | 2.6e-15 | 28.48 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |