Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCCAAGCTAAGCATCATGGAGACTATCGAGATCGAGAGCGGTCGAGAGATGCTGATGACTCAAGCCTAACTGTGTGGACTCCACCACCCCAACACCATTTCAAGTTGAATGTGGATGCAACACTAGCAAATGGAGATATGAGGTCAGACATGATTATCAGAAATTCAAAGAGAGATTCAATGGCAAGTGTAGAATATTTCAGGAGAACGAGTTGCTCAGTGGAGTGGGTAGAAGCACAGACTCTTGTTGACGACATTCAGCTAGCGATGGAGTCGGGATTATCACCAATATGGATAGAGATGGATTTCAAAATTGTATGGAATCTACTTCATGACCACGACAATTATTATAATGAGATTGCTCCCCTAATTCACCATCTCAAGCAATTGACCATTGATAATCACATCAGAGGTTTTTTACTGACAAAAAGGGAAGGCAACAAAGCGGCGCACCAGCTGGCTATTCATGCTCGCACATCAAAACCTTCAGAAGTTTGG
mRNA sequence
ATGGAGGCCCAAGCTAAGCATCATGGAGACTATCGAGATCGAGAGCGGTCGAGAGATGCTGATGACTCAAGCCTAACTGTGTGGACTCCACCACCCCAACACCATTTCAAGTTGAATGTGGATGCAACACTAGCAAATGGAGATATGAGGTCAGACATGATTATCAGAAATTCAAAGAGAGATTCAATGGCAAGTGTAGAATATTTCAGGAGAACGAGTTGCTCAGTGGAGTGGGTAGAAGCACAGACTCTTGTTGACGACATTCAGCTAGCGATGGAGTCGGGATTATCACCAATATGGATAGAGATGGATTTCAAAATTGTATGGAATCTACTTCATGACCACGACAATTATTATAATGAGATTGCTCCCCTAATTCACCATCTCAAGCAATTGACCATTGATAATCACATCAGAGGTTTTTTACTGACAAAAAGGGAAGGCAACAAAGCGGCGCACCAGCTGGCTATTCATGCTCGCACATCAAAACCTTCAGAAGTTTGG
Coding sequence (CDS)
ATGGAGGCCCAAGCTAAGCATCATGGAGACTATCGAGATCGAGAGCGGTCGAGAGATGCTGATGACTCAAGCCTAACTGTGTGGACTCCACCACCCCAACACCATTTCAAGTTGAATGTGGATGCAACACTAGCAAATGGAGATATGAGGTCAGACATGATTATCAGAAATTCAAAGAGAGATTCAATGGCAAGTGTAGAATATTTCAGGAGAACGAGTTGCTCAGTGGAGTGGGTAGAAGCACAGACTCTTGTTGACGACATTCAGCTAGCGATGGAGTCGGGATTATCACCAATATGGATAGAGATGGATTTCAAAATTGTATGGAATCTACTTCATGACCACGACAATTATTATAATGAGATTGCTCCCCTAATTCACCATCTCAAGCAATTGACCATTGATAATCACATCAGAGGTTTTTTACTGACAAAAAGGGAAGGCAACAAAGCGGCGCACCAGCTGGCTATTCATGCTCGCACATCAAAACCTTCAGAAGTTTGG
Protein sequence
MEAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDATLANGDMRSDMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVW
Homology
BLAST of Lcy01g005450 vs. ExPASy TrEMBL
Match:
A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 0
Query: 27 VWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEWVEAQTL 86
+W PP + +K+N DA+ D + + IIRN + MAS + SV+ EA
Sbjct: 33 LWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVA 92
Query: 87 VDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLT 146
V+ +QLA + G++P+ +E D ++NL +E ++ K + F
Sbjct: 93 VEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFV 152
Query: 147 KREGNKAAHQLAIHARTSKPSEVW 169
KREGNKAAH LA A + +W
Sbjct: 153 KREGNKAAHMLARRALLLREFSIW 176
BLAST of Lcy01g005450 vs. ExPASy TrEMBL
Match:
A0A2N9EU90 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 3.1e-10
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 0
Query: 17 SRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKRDSMASVEYFRRTSC 76
+R A W+PP +K+N DA + ++ +IIRN + MAS+ +
Sbjct: 498 TRQAVPLQRVTWSPPQPGRYKVNYDAAFFGDSNEVGIGVIIRNHNGEVMASLCHRIHYPH 557
Query: 77 SVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTI 136
SVE +EA IQ+A++ GL I IE D + V + L +H + LI+ T
Sbjct: 558 SVEAMEAYAARSAIQMAIDLGLQAIDIEGDSQTVVDALLNHAPCFTLYGNLINDTNIATQ 617
Query: 137 DNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVW 169
H FL KR+GN AH +A A+ S+P EVW
Sbjct: 618 SCHFVQFLHVKRDGNSIAHSIAKRAKFSQPFEVW 651
BLAST of Lcy01g005450 vs. ExPASy TrEMBL
Match:
A0A2N9GET2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25820 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 5.9e-09
Identity = 51/146 (34.93%), Postives = 70/146 (47.95%), Query Frame = 0
Query: 28 WTPPPQHHFKLNVDATLAN--GDMRSDMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLV 87
W PP K+N D + N G+ +IIRNS+ MAS+ SVE VEA
Sbjct: 568 WKPPAMGRVKINYDGAVFNETGEAGIGVIIRNSQGAVMASLSQRILFPHSVEAVEATAAR 627
Query: 88 DDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLK---QLTIDNHIRGFL 147
+QL ++ G + +E D + L + Y +I+ K QL + H FL
Sbjct: 628 LAVQLVLDLGFKEVEVEGDSVNIVQALSQTETSYTLYGHIINDTKLASQLLVSVH---FL 687
Query: 148 LTKREGNKAAHQLAIHARTSKPSEVW 169
KREGNK AH LA AR ++P +VW
Sbjct: 688 HVKREGNKVAHSLAKRARCNQPFQVW 710
BLAST of Lcy01g005450 vs. ExPASy TrEMBL
Match:
A0A2N9FRW5 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17561 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 7.7e-09
Identity = 49/150 (32.67%), Postives = 71/150 (47.33%), Query Frame = 0
Query: 21 DDSSLTVWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEW 80
+ S++T WTPP +K+N D + + + IIRN + ++MAS+ SVE
Sbjct: 51 EPSTVTKWTPPSSGQYKVNFDGAIFTESNEAGLGAIIRNHRGEAMASLCQRIPYPHSVEA 110
Query: 81 VEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHI 140
VEA + L ++ GL + IE D + L + Y LI K L +
Sbjct: 111 VEASATRTAVNLILDLGLREVDIEGDSLKIITALKQNSPCYTLYGHLIMETKTLAQNLTS 170
Query: 141 RGFLLTKREGNKAAHQLAIHARTSKPSEVW 169
F+ KR+GN AH LA AR +P EVW
Sbjct: 171 FQFMHVKRDGNTVAHSLAKRARLCEPLEVW 200
BLAST of Lcy01g005450 vs. ExPASy TrEMBL
Match:
A0A2N9HG19 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38757 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 50/143 (34.97%), Postives = 68/143 (47.55%), Query Frame = 0
Query: 28 WTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLV 87
W PP +K+N D + + +IIRN K ++MAS+ + SVE +EA
Sbjct: 1453 WKPPQPGRYKINYDGAMFAETNEAGIGVIIRNHKGEAMASMCHSIHYPHSVEAMEAYAAR 1512
Query: 88 DDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTK 147
QLA++ G++ + IE D K + N L LI+ K FL K
Sbjct: 1513 SAAQLAIDLGITEVDIEGDSKTIVNALLATTPCCTLYGHLINDTKNAAHSCLSVQFLHVK 1572
Query: 148 REGNKAAHQLAIHARTSKPSEVW 169
REGN AH LA AR S+P EVW
Sbjct: 1573 REGNSLAHSLAKRARFSQPLEVW 1595
BLAST of Lcy01g005450 vs. NCBI nr
Match:
MBA0755499.1 (hypothetical protein [Gossypium gossypioides])
HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 52/162 (32.10%), Postives = 77/162 (47.53%), Query Frame = 0
Query: 10 DYRDRERS-RDADDSSLTVWTPPPQHHFKLNVDA--TLANGDMRSDMIIRNSKRDSMASV 69
+YR S + S+ W+PPPQ FK+NVDA ++AN + +D IIRN + M S
Sbjct: 150 EYRSSAESLKHPQPRSMVKWSPPPQGWFKVNVDAGVSIANNRVVTDFIIRNDEGFIMGSG 209
Query: 70 EYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLI 129
SV EA ++ +Q A++ G S + +E D ++V N + Y+E P
Sbjct: 210 FQRHNLVLSVVIAEAIAVLHGLQFALDMGFSRVILESDSRLVVNNIQKSSEDYSESRPFT 269
Query: 130 HHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVW 169
+K L H F REGN AAH L + ++ W
Sbjct: 270 WDVKNLARKFHCCRFQFVAREGNGAAHALVVEGMQAEGDSFW 311
BLAST of Lcy01g005450 vs. NCBI nr
Match:
KAG6608327.1 (hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 79.3 bits (194), Expect = 3.4e-11
Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 0
Query: 28 WTPPPQHHFKLNVDATLANGDMRSDM----IIRNSKRDSMASVEYFRRTSCSVEWVEAQT 87
W P KL+VDAT+ N +M M I + +DS
Sbjct: 22 WVSLPHDQDKLSVDATMHNEEMGCQMGLFEIPKALGKDSSRG------------------ 81
Query: 88 LVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLL 147
QL M +GL+ +W +++ K+VW LL D D ++ EIA LI HLK L+ ++ I+GFL
Sbjct: 82 ----NQLGMATGLTSVWPKVNSKVVWTLLMDQDQHFIEIAHLIKHLKHLSQNHCIKGFLP 141
Query: 148 TKREGNKAAHQLAIHARTSKPSEV 168
T ++ KA H LAIHA +K E+
Sbjct: 142 TPKDDTKATHTLAIHAWHTKHLEI 143
BLAST of Lcy01g005450 vs. NCBI nr
Match:
XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])
HSP 1 Score: 79.3 bits (194), Expect = 3.4e-11
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 0
Query: 27 VWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEWVEAQTL 86
+W PP + +K+N DA+ D + + IIRN + MAS + SV+ EA
Sbjct: 33 LWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMAEAIVA 92
Query: 87 VDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLT 146
V+ +QLA + G++P+ +E D ++NL +E ++ K + F
Sbjct: 93 VEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHASFNFV 152
Query: 147 KREGNKAAHQLAIHARTSKPSEVW 169
KREGNKAAH LA A + +W
Sbjct: 153 KREGNKAAHMLARRALLLREFSIW 176
BLAST of Lcy01g005450 vs. NCBI nr
Match:
XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])
HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09
Identity = 50/153 (32.68%), Postives = 70/153 (45.75%), Query Frame = 0
Query: 19 DADDSSLTVWTPPPQHHFKLNVDATLANGDMRS--DMIIRNSKRDSMASVEYFRRTSCSV 78
D ++ W PP FK+NVDA G+ + D++IR+S + + S F V
Sbjct: 64 DGRGGRVSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHVSDV 123
Query: 79 EWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDN 138
E + + LA+E+GL P IE D V+NLL +EI L ++ +
Sbjct: 124 TLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLASSIRHIVSSL 183
Query: 139 HI-RGFLLTKREGNKAAHQLAIHARTSKPSEVW 169
HI GF REGN AH LA S+ VW
Sbjct: 184 HIGGGFSFVNREGNSGAHTLARMGMVSESFHVW 216
BLAST of Lcy01g005450 vs. NCBI nr
Match:
XP_023915006.1 (uncharacterized protein LOC112026546 [Quercus suber])
HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09
Identity = 51/148 (34.46%), Postives = 76/148 (51.35%), Query Frame = 0
Query: 23 SSLTVWTPPPQHHFKLNVDATLANGDMRSD--MIIRNSKRDSMASVEYFRRTSCSVEWVE 82
SSL W PPP K+NVD ++ S +IIR+S+ S+A+ + + E
Sbjct: 343 SSLINWRPPPAGFTKINVDGAASDDGRPSSTGVIIRDSQGSSIAASCRVLSSPFPADISE 402
Query: 83 AQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRG 142
A L D + LA+E GLS + E D + +++ N EI ++ ++K L
Sbjct: 403 ALALQDGVMLALELGLSKVIFESDALSIIQAINE-GNVGGEIGHIMQNIKDLASSFSWCT 462
Query: 143 FLLTKREGNKAAHQLAIHARTSKPSEVW 169
F KREGN+AAH+LA AR + S+VW
Sbjct: 463 FQHQKREGNRAAHELARAARMTGISQVW 489
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CIF1 | 1.7e-11 | 31.25 | uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A2N9EU90 | 3.1e-10 | 33.77 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1 | [more] |
A0A2N9GET2 | 5.9e-09 | 34.93 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9FRW5 | 7.7e-09 | 32.67 | RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17561 ... | [more] |
A0A2N9HG19 | 1.3e-08 | 34.97 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38757 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
MBA0755499.1 | 1.2e-11 | 32.10 | hypothetical protein [Gossypium gossypioides] | [more] |
KAG6608327.1 | 3.4e-11 | 35.42 | hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022140628.1 | 3.4e-11 | 31.25 | uncharacterized protein LOC111011237 [Momordica charantia] | [more] |
XP_022135942.1 | 1.4e-09 | 32.68 | uncharacterized protein LOC111007775 [Momordica charantia] | [more] |
XP_023915006.1 | 2.5e-09 | 34.46 | uncharacterized protein LOC112026546 [Quercus suber] | [more] |
Match Name | E-value | Identity | Description | |