Lcy01g003490 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003490
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Embryo sac development arrest protein
Location	Chr01: 4190718 .. 4191092 (-)
RNA-Seq Expression	Lcy01g003490
Synteny	Lcy01g003490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTTCACTCACGCACCACCACCACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGCCGTTTGTGAAGCCGAAAGCTTTGGGAGCCGACTCCGTTGCGTCGAATCGGCTTCTAGCCGGCTACCTGGCTCACGAGTTTCTCAGCAGAGGCACTTTGTTTGGGGAGAAGTACGAGCCGGCTCGAAGCGAAGCCGCGTCCATGGCTAGCTGTTCGCCAGCCGAGTGTAAGAGGACGAAGCCGGAAGCCAGAAAGGAAAATCAGAGCTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTGA

mRNA sequence

ATGAGTGTTCACTCACGCACCACCACCACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGCCGTTTGTGAAGCCGAAAGCTTTGGGAGCCGACTCCGTTGCGTCGAATCGGCTTCTAGCCGGCTACCTGGCTCACGAGTTTCTCAGCAGAGGCACTTTGTTTGGGGAGAAGTACGAGCCGGCTCGAAGCGAAGCCGCGTCCATGGCTAGCTGTTCGCCAGCCGAGTGTAAGAGGACGAAGCCGGAAGCCAGAAAGGAAAATCAGAGCTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTGA

Coding sequence (CDS)

ATGAGTGTTCACTCACGCACCACCACCACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGCCGTTTGTGAAGCCGAAAGCTTTGGGAGCCGACTCCGTTGCGTCGAATCGGCTTCTAGCCGGCTACCTGGCTCACGAGTTTCTCAGCAGAGGCACTTTGTTTGGGGAGAAGTACGAGCCGGCTCGAAGCGAAGCCGCGTCCATGGCTAGCTGTTCGCCAGCCGAGTGTAAGAGGACGAAGCCGGAAGCCAGAAAGGAAAATCAGAGCTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTGA

Protein sequence

MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGEKYEPARSEAASMASCSPAECKRTKPEARKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM

Homology

[Close]

BLAST of Lcy01g003490 vs. ExPASy TrEMBL
Match: A0A6J1KXG9 (uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 107/130 (82.31%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MS HSRT TTMLPP ASRKRKEVE PFVKPKA G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSFHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA------RKENQSYAEVASILKMDGAHLPGIVN 120
           EKYEP RSEA  M S  P+ECKRTKPEA      RKEN SYAEVASILKMDGAHLPGIVN
Sbjct: 61  EKYEPPRSEAVGMTSSQPSECKRTKPEAAAAPSVRKENHSYAEVASILKMDGAHLPGIVN 120

Query: 121 PAQLARWIKM 125
           PAQLARWIKM
Sbjct: 121 PAQLARWIKM 129

[Close]

BLAST of Lcy01g003490 vs. ExPASy TrEMBL
Match: A0A6J1HJY7 (uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC111464257 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 2   SVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGE 61
           SVHSRTTTTMLPPGASRKRKEVE  FVKPKA+GADSV SNRLLAGYLAHEFLS+GTLFGE
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVE-AFVKPKAVGADSVVSNRLLAGYLAHEFLSKGTLFGE 62

Query: 62  KYEPARSEAASMASCSPAECKRTKPEA------RKENQSYAEVASILKMDGAHLPGIVNP 121
           KYEPARSEA  M    PAE K+TKPEA       KENQSYAEVASILKM+GAHLPGIVNP
Sbjct: 63  KYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHLPGIVNP 122

Query: 122 AQLARWIKM 125
           AQLARWIKM
Sbjct: 123 AQLARWIKM 130

[Close]

BLAST of Lcy01g003490 vs. ExPASy TrEMBL
Match: A0A6J1H3W4 (uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC111460190 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.0e-47
Identity = 106/136 (77.94%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPKA   DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATAVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA------------RKENQSYAEVASILKMDGAH 120
           EKYEPARSEA  M S  P+ECKR KPEA            RKE+ SYAEVASILKMDGAH
Sbjct: 61  EKYEPARSEAVGMTSSQPSECKRMKPEAATAAAAAAAPSVRKEDHSYAEVASILKMDGAH 120

Query: 121 LPGIVNPAQLARWIKM 125
           LPGIVNPAQLARWIKM
Sbjct: 121 LPGIVNPAQLARWIKM 135

[Close]

BLAST of Lcy01g003490 vs. ExPASy TrEMBL
Match: A0A5A7UAS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00360 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 88/120 (73.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 11  MLPPGAS-RKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGEKYEPARSE 70
           M PPG S RKRKEVE P VKPK   AD++++NRLLAGYLAHEFLS GTLFGEKYE A++E
Sbjct: 1   MSPPGGSPRKRKEVE-PLVKPKVAEADAISANRLLAGYLAHEFLSNGTLFGEKYETAQTE 60

Query: 71  AASMASCSPAECKRTKPEA-----RKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 125
           A  MA+   AECKRTKPEA     +K N SYAEVASILKMDGAHLPGIVNP QLA WIKM
Sbjct: 61  AVGMANLQSAECKRTKPEAAAAGIKKLNPSYAEVASILKMDGAHLPGIVNPGQLAWWIKM 119

[Close]

BLAST of Lcy01g003490 vs. ExPASy TrEMBL
Match: A0A0A0LI65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 86/120 (71.67%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 11  MLPPGAS-RKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGEKYEPARSE 70
           M PPG S RKRKEVE P VKPK   ADS+++NRLLAGYLAHEFL  GTLFGEKYEPA +E
Sbjct: 1   MSPPGGSPRKRKEVE-PLVKPKVAEADSISANRLLAGYLAHEFLCNGTLFGEKYEPALNE 60

Query: 71  AASMASCSPAECKRTKPEA-----RKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 125
           A  MA+    ECKRTK EA     +K N SYAEVA ILKMDGAHLPGIVNP QLA WIKM
Sbjct: 61  AVGMANSQSTECKRTKLEAAAASIKKVNHSYAEVARILKMDGAHLPGIVNPGQLAWWIKM 119

[Close]

BLAST of Lcy01g003490 vs. NCBI nr
Match: XP_023547636.1 (uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.1 uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 3.1e-49
Identity = 109/132 (82.58%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPKA G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA--------RKENQSYAEVASILKMDGAHLPGI 120
           EKYEPARSEA  M S  P+ECKRTKPEA        RKEN SYAEVASILKMDGAHLPGI
Sbjct: 61  EKYEPARSEAVGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGI 120

Query: 121 VNPAQLARWIKM 125
           VNPAQLARWIKM
Sbjct: 121 VNPAQLARWIKM 131

[Close]

BLAST of Lcy01g003490 vs. NCBI nr
Match: KAG6574904.1 (hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 8.9e-49
Identity = 109/134 (81.34%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPKA G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA----------RKENQSYAEVASILKMDGAHLP 120
           EKYEPARSEA  M S  P+ECKR KPEA          RKENQSYAEVASILKMDGAHLP
Sbjct: 61  EKYEPARSEAVRMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKMDGAHLP 120

Query: 121 GIVNPAQLARWIKM 125
           GIVNPAQLARWIKM
Sbjct: 121 GIVNPAQLARWIKM 133

[Close]

BLAST of Lcy01g003490 vs. NCBI nr
Match: XP_023006321.1 (uncharacterized protein LOC111499092 [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-48
Identity = 107/130 (82.31%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MS HSRT TTMLPP ASRKRKEVE PFVKPKA G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSFHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA------RKENQSYAEVASILKMDGAHLPGIVN 120
           EKYEP RSEA  M S  P+ECKRTKPEA      RKEN SYAEVASILKMDGAHLPGIVN
Sbjct: 61  EKYEPPRSEAVGMTSSQPSECKRTKPEAAAAPSVRKENHSYAEVASILKMDGAHLPGIVN 120

Query: 121 PAQLARWIKM 125
           PAQLARWIKM
Sbjct: 121 PAQLARWIKM 129

[Close]

BLAST of Lcy01g003490 vs. NCBI nr
Match: KAG7013475.1 (hypothetical protein SDJN02_23641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-48
Identity = 108/134 (80.60%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPKA G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA----------RKENQSYAEVASILKMDGAHLP 120
           EKYEPARSEA  M S  P+ECKR KPEA          RKENQSYAEVASILKMDGAHLP
Sbjct: 61  EKYEPARSEAVRMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKMDGAHLP 120

Query: 121 GIVNPAQLARWIKM 125
           GIVNPAQLARWIK+
Sbjct: 121 GIVNPAQLARWIKI 133

[Close]

BLAST of Lcy01g003490 vs. NCBI nr
Match: XP_022964143.1 (uncharacterized protein LOC111464257 [Cucurbita moschata])

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-48
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 2   SVHSRTTTTMLPPGASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGE 61
           SVHSRTTTTMLPPGASRKRKEVE  FVKPKA+GADSV SNRLLAGYLAHEFLS+GTLFGE
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVE-AFVKPKAVGADSVVSNRLLAGYLAHEFLSKGTLFGE 62

Query: 62  KYEPARSEAASMASCSPAECKRTKPEA------RKENQSYAEVASILKMDGAHLPGIVNP 121
           KYEPARSEA  M    PAE K+TKPEA       KENQSYAEVASILKM+GAHLPGIVNP
Sbjct: 63  KYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHLPGIVNP 122

Query: 122 AQLARWIKM 125
           AQLARWIKM
Sbjct: 123 AQLARWIKM 130

[Close]

BLAST of Lcy01g003490 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-20
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 15  GASRKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGEKYEPARSEAASMA 74
           GASRKRK+ E           ++   N LLAGY+AHE+L+ GT+ G K     +E   + 
Sbjct: 10  GASRKRKDTESDL-------REAATPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVGPLV 69

Query: 75  SCSPAECKRTKPEARKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 125
           S SP + +    E +K  QSY+EVAS+ K DG H+PG+VNP QLA+WI+M
Sbjct: 70  SPSPLQSR----EVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWIQM 108

[Close]

BLAST of Lcy01g003490 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 7.8e-19
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 13  PPGAS--RKRKEVEPPFVKPKALGADSVASNRLLAGYLAHEFLSRGTLFGEKYEPARSEA 72
           PP  S  +K   +  P        A+ V SN+LLAGYLAHEFL+ GTLFGE + P +++A
Sbjct: 33  PPTKSIVKKTPIIPRPTTTATVALAEPVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQA 92

Query: 73  ASMASCSPAECKRTKPE-----ARKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 125
             + + S  + ++ KP      +  + + Y EVA+IL++DG HLPGIVNP+QLAR++K+
Sbjct: 93  GPLTTQS-IDPRKNKPSHDIEPSDHKRRRYVEVANILRVDGTHLPGIVNPSQLARFLKL 150

[Close]

BLAST of Lcy01g003490 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-18
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 23  VEPPFVKPKALGADSVASNRL-LAGYLAHEFLSRGTLFGEKYEPARSEAASMASCSPAEC 82
           V P   K     A+ + SN+L LAGYL+HE+L++GTLFGE++  AR++A S +   P+  
Sbjct: 51  VNPISKKSSTAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAES-SKIKPSHT 110

Query: 83  KRTKPEARKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM 125
                E   + + Y EVA++L+ DGA LPGIVNPAQLAR++K+
Sbjct: 111 VEPAEECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLKL 152

The following BLAST results are available for this feature:

BLAST of Lcy01g003490 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXG9	1.3e-48	82.31	uncharacterized protein LOC111499092 OS=Cucurbita maxima OX=3661 GN=LOC111499092...	[more]
A0A6J1HJY7	1.6e-48	83.72	uncharacterized protein LOC111464257 OS=Cucurbita moschata OX=3662 GN=LOC1114642...	[more]
A0A6J1H3W4	4.0e-47	77.94	uncharacterized protein LOC111460190 OS=Cucurbita moschata OX=3662 GN=LOC1114601...	[more]
A0A5A7UAS9	3.2e-36	73.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LI65	1.3e-34	71.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G173040 PE=4 SV=1	[more]

BLAST of Lcy01g003490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547636.1	3.1e-49	82.58	uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637....	[more]
KAG6574904.1	8.9e-49	81.34	hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006321.1	2.6e-48	82.31	uncharacterized protein LOC111499092 [Cucurbita maxima]	[more]
KAG7013475.1	2.6e-48	80.60	hypothetical protein SDJN02_23641, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022964143.1	3.4e-48	83.72	uncharacterized protein LOC111464257 [Cucurbita moschata]	[more]

BLAST of Lcy01g003490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23440.1	9.2e-20	45.45	embryo sac development arrest 6	[more]
AT5G44060.1	7.8e-19	43.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G04000.1	2.3e-18	46.60	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR34657	EMBRYO SAC DEVELOPMENT ARREST 6	coord: 19..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003490.1	Lcy01g003490.1	mRNA