Lcy01g003300 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003300
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA topoisomerase 2
Location	Chr01: 3955962 .. 3961978 (-)
RNA-Seq Expression	Lcy01g003300
Synteny	Lcy01g003300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGAGTATGAGTCTTGGAAAGAGAACTTGAGAGGCAATGCAAGTGGCTGGTCAATCAAGTACTATAAGGTCGGTCTTCTGAACTTAAATATAGTAACTTCATTGTGTAAGTTGTATTTCTTCAAATTCTATTTGAAAAGATATTCATGTTTCAGTGCATTAATTCGTTGTCTTGATTGCGTAGGGGTTGGGAACAAGCACATCGAAAGAAGGAAGAGAGTACTTTGATCAGCTGGAAAAACATAAGAAAGAATTTATTTGGAAAGATGCCCATGATGGAGAGGCCATTGAACTTGCGTTCAGTAAGAAGAAGATTGAAGAGAGGAAAAATTGGCTCCGTCAATTTGAGGTAAGAAGTCTCATCAGTTAGCCCATGTTTTTTTCTTTCCTCTTGCAAGGAGTTCATTGTGTTACTGATGTGATGTCACTCTCTTATGTAACGCTTGCAGCCTGGTATCCATCTAGATCAGACAGAAAAATTGATAAAATACAGTGACTTCATCAACAAGGAGCTTATATTATTTTCGATAGCTGATTTACAAAGGTCTGTTCCCTCAATGGTTGATGGCCTCAAGCCTGGCCAGAGGAAGATCCTTTTCTGTTCTTTCAAGAGAAACTTTATTAAAGAAGCAAAAGTTTCTCAATTTGCCGGTTACGTATCTGAGCAGTCTACTTATCATCATGGTGAATGTTGATAAATTGATATCTACAAATGTAAGGGAAGTGCCTCTCACGTGCACAATTAAATCAGTAACTGTCCGTGGCTGCCTACTGCTTCTATATAAGGACTGATAGCCTCACGAATTAGGAGTCTTCTGTGAGCTTTGTAAAAGCCAGTTGTATAACTTGCCTCTTTTGTTCCCTGATTACATTTTGAATAAAACCTTTGTCCCTGGTGCTTTAAAGTGGATGTACACCCATTCTGGTGGAACCACTATAACCCTTTGTGTTTTGTCTCTCTTCTCTCTCTATTGCTCACTTAATACTCTGTTTCCTTAAACTTTGTTATTAACTGACTTGAAAACCCATCTCTGTCATATTAAGTAAACTGGAATTGGCACCTATAGTCCAACAGTTTGGTATCAGAGCTTGATAATAGGATTCAAGATTTGGTTGGTCGAACGCCATATCAAAGATCTTCCGCAAGAATTCAAAACCTTTGCCACTCGATTGTCGAGAATCACTGAAATCCTAACCTTGAAGAAGTTGGAGATTTCTTGGAGCATTTCACCCAATGTCAGCGAAATTTGAACTTGATGAACGATATGATGGAAAGAGCGATTTTGGACTCTGGAAACAAAAACTCAAAGCTCTCTTGATCCAACAAAAAGTTGCAAAGGTATTGTTCGATCCAGGTAAGCTTCCTTCAACTCTCTCTCTGATGATGATAAGGAAGAGATGCGAGATATCGCTCATAGCTCTATAATTCTGCATCTATCTGACAATGTTCTTAGAAGGGTAGGTAAAATTGAAAAAGTCGAAGAACTTTGGGCTAAATTAGAAGAGCTTTATTTACCTAAATCGCTTTCATGTAAAATCTTTCTAAAAGAACGTTTCTTTGGTTTCAAGATGGATCCTTCTAAGAATCTTGATGAGAATTTAGATGACTTTAACACCATATGTACTAAGTTAGAAAATTCAGGTGAAGAAGTCAAGGGAGTTGATCAAGACGTAATTCTATTAAACTCGTTACCTGAGTCTTATAAAGAAATTAAACCGGGTCTTAAATATGGCAGGGAAAAATTGTCAGTTGATATGGTACTAGATGCCCTAAGAACCAAAGAACTAGAATTAAAGAATGAGAAGAAAGATGGTGATGCTCTCTTTAGTAAAGGTAAACAGTCTAACACACAGACTCAAACTAGTAGTTCTAGAGGAAGAAATTTTAGAGGCTGAGGGAGGAACTCTCAACATAGAGGCCAACATTTTAATACCACTCAACAAACCAATAACAGGCAGCCTAGTAAAATCAATAATAGTGTAAATTCTAGTGATAAAAGTAATATAACATGTAACTATTGTCACAAAGAAGGCCACTATAAATGGGATTGTCCCCAACTAAAAAGAAAAGCTAATAAACAGAACTTCAAAGAGAACAAAAATGCAGCCAATTACCATGAAGGTTATGAGTCTGCAGAAGTTCTAGTAGCATCTGTGGCTGATTGCAAAGAGGAATGGATACTTGACTCAGGGTGTTCGTTTCATATGACCCCTTTTAGAACCTATTTTTCTGAATTTATAGAATTCGATGGAGGAAAAGTGGTCATGGGTTATCAACATTGTTTAGTTAAGGGTCTAGGGAGTGTTAAGTTGAGATTGGATGATGGTACTATGAAAATCTTGAAATCTGTAAGATATGTACCTAACTTGAAAAGAAACCTGATTTCTTTAGGGACACTTGACAAAGATGGCTGCAGGTATGAGTCTGGAAATGGCACATTAAAAGTATACAAAGGGGATTCATTAAAATTAACTGGTGTTCTGTGTAGTGGTCTGTATGTTTTGCAGGGGAAAGCAGTAGTTGGTGAACTAAATGTTGCAAATGAGCAGTTGGATAACGAAACTTATTTGTGGCACAAGAGGCTTGCACACATTAGTGAGAAAGGATTAGACTGCCTATTCAAACAAGGGCTAATTGGAAAGAAAAAACCGACTGCCTTAAGCTTTTGTGAACATTGTGTTTTGGGCAAATCAACAAGGCAAGGTTTTAAACCTGCTTCTTACACAACCAAAGACAAGCTCGAGTATGTCCATTCAGACCTTTGGGGACCAGCTCGAGTGTCCACAATTGGAGGTGCTAGGTCTTTTCTATCTTTGATTGATGACTTTTCTAGAAAACTTTGGGTTTATATGTTGAAATCAAACGATGAAGCGTTTGATCGTTTTCTAGAATGGAAAAACTTTGTAGAAAATCAAACAGGTAAACGGTTGAAATGTCTTAGGACTGACAATGGATTAGAATTTTTAAATGATAAATTTGCTAGCTTGTGTAAGTCTTCAGGAATTAGTAGGCATCTTACAGCAGCTCGAACTCCTCAGCAAAATGGACTGGCCGAAAGGTATAATAGGACAATTTTGGAAAGAGTTCGTTGTATGTTGTCCAATGCCCAGCTGCCAAGGATGTTTTGGGGTGAAGCTGTTAGCACTGCTGCCTATTTGATTAACCGCAACCCATCAACCGCTCTTGGATTCAAAACTTCTCAAGAGTTGTGGACAGGTCATGTTCCTAACTTGAAGCACCTGAAAACCTTTGGATGTGCCGCCTATGTCCACACAAGACAAGATAAGTTGCAGCCACGAGCAAAAAAATGCATTTTCATTGGTTATCCTCAAGGGGTAAAGGCATATAAGCTTTGGTGTTTAGAACTAGGGGAATCCAAGTGTATTACTAGTAGGGATGTCACCTTCAATGAATCGGATATGCCTTGGAGAACTTCTAATACAAATGGAAGTCAGCAGCAGGTTGAGACTATTTTTGAGATTGATCTTCAACCTCCCAGTGTTGGAAACTTGACTGAAACTGATGCACATCAGCAAGAAGAAATCTTAGAAGCACAAGAGCAAACTCTATTACCTAGCACATCTCAACCTATTCCAACAGACCAAGGGGAACTTGAAGACTATCAATTAACTAGAGATCGTGCAAGGAGGACAATCAGACCCTCCACAAGGTATGATTCGGATTTTGTGGGATATGCATTTAATTGTTTTACTGATAACTTTAAGTTTAAGCCTAGCACTTATAATCAAGCCATAAAATCTGAGGCTAAAGATAAGTGGATAGATGCCATGGAGCAAGAAATGCAGTCCCTACATCTTAATGAAACTTGGAAACTAGTTCAAAAACCAGCCGACAAGAAAATCATAGACTGTAAATGGATATATAAGTTGAAACCAAGTATAGATGGGCTGGATCCTCCTCGGTATAAAGCCAGACCGGTGGCTAAAGGATTTACTCAAGAAGAAGGAATCGACTACAATGAGGTATTTTCACCTGTGGTACGACATACGTCCATTCGTATTTTACTCTCCAGTGTTGTGCATTTTGGTTTAGAATTGGAACAGATGGACGTAACCACTGCCTTCTTATATGGCCACCTTGAGGAAGACATTTACATGGCTCAACCCTTAGGATTTATTGAAGAAGGAGGGGAAGACTTGGTTTGCCATCTCCAAAAATCCATTTATGGATTGAAACAATCCCCAAGGCAGTGGAATAAGAGGTTTGACACCTTTATCTTGACTCAAGGGTTTGTTAATAGTGCTTTTGATTCCTGTGTCTATAAGAAGATTGTCTCTACTGCAGTTTTTGTTTTAGTCCTTCTGTATGTAGATGATATATTAATTGCCTCTTTAGATATGCTTGAGATCTCGAAACTAAAGAGAGCTTTAAGTAAAGAGTTTAAGATGAAGGACTTAGGGGCTACCAAACGGATCCTTGGAATGGAATTAGTAAGGGACAAACAGAGAGAGACTTTGGTGATTTCTCAAACAGAATACTTCAGTAAAATTATTGCAAAATTCCATTTAGAACAAGCCAAGATAGTCAAAACTCCATTTGCTCAGCATTTCAAACTATCTGCCACCCAATCCCCAGTAAGTGAACAAGAAATAGCAGAAATGAAGACAGTTCCTTACGCAAACTTAGTGGGGAGCTTGATGTACGACATGGTGTGTTGCAGACCAGATTTAGGCAATTCTTTAAGTGTAGTCAGCCGTTACATGGGTAACCCTGGAAGAGAGCATTGGGAGGCATCTAAGTGGATAGTACGTTATCTTAAGGGAACATTGAATAAAGGTCTAATTTATTCAAAATCTGGTTCTATGACAGATATCTTGACAGGTTTTGTTGATTCGGATTATGCTGCTGACCTGGATAAACGTAGGTCTCTAACAGGTTATATTTTTACCTTATTCAATAATGTTATAAGCTGGAGGTCTGTTTTGCAATCGGTTGTAGCTTTGTCTTCAACAGAAGCCAAGTACATTGCCTTAACCGAATCAGTAAAGGAAGCTCTATGGCTGAAGGGAAGTGTATCTGAAATGCTAAATATTGAATGTGATGTAACAACTGCTCATTCCATTTTAGTATCCTGGGAAAAGCAGCAAACTCTAGAAGCTAGGACTTTATTCACCTTTGGACATGAACATTCCGTTCTCAGCGGAAACCCGCCTTAGAGATTGAACGCTACTTATCTTATTGCCATTGAACGGCCTCCTTATTCAACCAATAGAAAGAAGCCTTTGGTACAACATGTTGTAGTTAAGGTTTGGAACCCTTGCAACGCTCGGAAATAATGACTTTGTTTTATTGTGGAACAGCCGCAGGGTAAAGCTATAGTTGTCAACGATGATAGTGAAGAGGACGATTCATCTCCTGATCGATCAGAAGGTAAAGGTAAAATAATTCGCTCATTGTTGAACTACCACTGAGCATGAATTTATATATAACAAGTGATTACCAATATTAATTGGAAAGTAAATTACATTACAAAAGTTTTAACTTAGGTCCTTTTATCACATAAAACTACCACTAAACCTGAATGTTACATTGAGATTTAGATTTTCATGTAAAACTATGTTAGATTCATATTATCATGTAAAACTACCTCTAAATCAGTTCAATTACCTTGAGATTCCTGATGTTAACAGTGTAATATTAGTTTCTCTTTCTGTTTTATTATTATTTGTTTTCTGTTAGTGTTTTGTTGTGATGTAAGCCAAATGGTTAGTTCTATTGTAGCCTATTTATATCAAGGCTTGTATACTTTGTAAACAAGGAAGAATAATACAACAGCTATCATTTTCAGATTTTGTGAAAATGTTCTAATGCCCTTTGTTTCTGAAGATCATACAAATTGTTGATGATCATACTTATTTTTCATTTTTCAGTTTCAGCCATGGAAACTGAAGTGCCGGCCAAGAAAAGAGAGCAGCTGCCAAGAAGAAAACTAATGCAAAGTCTGCTCAGACCTCCAACCACGACGACAGTGACGACGAGGACTTCAAAGTAA

mRNA sequence

ATGCTCGAGTATGAGTCTTGGAAAGAGAACTTGAGAGGCAATGCAAGTGGCTGGTCAATCAAGTACTATAAGGGGTTGGGAACAAGCACATCGAAAGAAGGAAGAGAGTACTTTGATCAGCTGGAAAAACATAAGAAAGAATTTATTTGGAAAGATGCCCATGATGGAGAGGCCATTGAACTTGCGTTCAGTAAGAAGAAGATTGAAGAGAGGAAAAATTGGCTCCGTCAATTTGAGCCGCAGGGTAAAGCTATAGTTGTCAACGATGATAGTGAAGAGGACGATTCATCTCCTGATCGATCAGAAGGTAAAGTTTCAGCCATGGAAACTGAAGTGCCGGCCAAGAAAAGAGAGCAGCTGCCAAGAAGAAAACTAATGCAAAGTCTGCTCAGACCTCCAACCACGACGACAGTGACGACGAGGACTTCAAAGTAA

Coding sequence (CDS)

ATGCTCGAGTATGAGTCTTGGAAAGAGAACTTGAGAGGCAATGCAAGTGGCTGGTCAATCAAGTACTATAAGGGGTTGGGAACAAGCACATCGAAAGAAGGAAGAGAGTACTTTGATCAGCTGGAAAAACATAAGAAAGAATTTATTTGGAAAGATGCCCATGATGGAGAGGCCATTGAACTTGCGTTCAGTAAGAAGAAGATTGAAGAGAGGAAAAATTGGCTCCGTCAATTTGAGCCGCAGGGTAAAGCTATAGTTGTCAACGATGATAGTGAAGAGGACGATTCATCTCCTGATCGATCAGAAGGTAAAGTTTCAGCCATGGAAACTGAAGTGCCGGCCAAGAAAAGAGAGCAGCTGCCAAGAAGAAAACTAATGCAAAGTCTGCTCAGACCTCCAACCACGACGACAGTGACGACGAGGACTTCAAAGTAA

Protein sequence

MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIELAFSKKKIEERKNWLRQFEPQGKAIVVNDDSEEDDSSPDRSEGKVSAMETEVPAKKREQLPRRKLMQSLLRPPTTTTVTTRTSK

Homology

[Close]

BLAST of Lcy01g003300 vs. ExPASy Swiss-Prot
Match: P30182 (DNA topoisomerase 2 OS=Arabidopsis thaliana OX=3702 GN=TOP2 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 9.4e-29
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE WKE+L+GNA+GW IKYYKGLGTST++EG+EYF  L  HKK+F+W+D  DGEAIE
Sbjct: 592 MPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIE 651

Query: 61  LAFSKKKIEERKNWLRQFEP 81
           LAFSKKKIE RKNWL  + P
Sbjct: 652 LAFSKKKIEARKNWLSSYVP 671

[Close]

BLAST of Lcy01g003300 vs. ExPASy Swiss-Prot
Match: O24308 (DNA topoisomerase 2 OS=Pisum sativum OX=3888 GN=TOP2 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WKE L  +A+ W IKYYKGLGTST +EGREYF  L +H+K+FIW D  DG AIE
Sbjct: 578 MPEYEAWKERLGNSATSWKIKYYKGLGTSTPQEGREYFSDLGRHRKDFIWDDELDGNAIE 637

Query: 61  LAFSKKKIEERKNWLRQFEP 81
           LAFSKKK E RK W+R FEP
Sbjct: 638 LAFSKKKAEGRKIWMRNFEP 657

[Close]

BLAST of Lcy01g003300 vs. ExPASy Swiss-Prot
Match: P41001 (DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 / Thailand) OX=5839 GN=TOP2 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-19
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 3   EYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIELA 62
           EYE WKEN   N  GW IKYYKGLGTST +E ++YF  ++ HK  F+W    DG++I++A
Sbjct: 631 EYEQWKENT--NLLGWKIKYYKGLGTSTDREFKQYFSDIKNHKIMFLWTGDRDGDSIDMA 690

Query: 63  FSKKKIEERKNWLRQF 79
           FSKK+IE+RK WL+ F
Sbjct: 691 FSKKRIEDRKLWLQNF 704

[Close]

BLAST of Lcy01g003300 vs. ExPASy Swiss-Prot
Match: O42130 (DNA topoisomerase 2-alpha OS=Gallus gallus OX=9031 GN=TOP2A PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 3   EYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIELA 62
           E+E WK + + N + W IKYYKGLGTSTSKE +EYF  + +H+  F +    D  AI LA
Sbjct: 595 EFEEWKSSTQ-NYNSWKIKYYKGLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLA 654

Query: 63  FSKKKIEERKNWLRQF 79
           FSKKK+EERK WL  F
Sbjct: 655 FSKKKVEERKEWLTNF 669

[Close]

BLAST of Lcy01g003300 vs. ExPASy Swiss-Prot
Match: Q64399 (DNA topoisomerase 2-beta OS=Cricetulus longicaudatus OX=10030 GN=TOP2B PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-16
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 3   EYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIELA 62
           E++ WK+++  N   W IKYYKGLGTST+KE +EYF  +E+H+  F +    D  AI LA
Sbjct: 603 EFDEWKKHIE-NQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLA 662

Query: 63  FSKKKIEERKNWLRQF 79
           FSKKKI++RK WL  F
Sbjct: 663 FSKKKIDDRKEWLTNF 677

[Close]

BLAST of Lcy01g003300 vs. ExPASy TrEMBL
Match: A0A6J1J555 (DNA topoisomerase 2 OS=Cucurbita maxima OX=3661 GN=LOC111481402 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 588 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 647

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 648 LAFSKKKIEERKNWLRQFE 666

[Close]

BLAST of Lcy01g003300 vs. ExPASy TrEMBL
Match: A0A6J1IWX9 (DNA topoisomerase 2 OS=Cucurbita maxima OX=3661 GN=LOC111481402 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 588 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 647

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 648 LAFSKKKIEERKNWLRQFE 666

[Close]

BLAST of Lcy01g003300 vs. ExPASy TrEMBL
Match: A0A6J1DGT3 (DNA topoisomerase 2 OS=Momordica charantia OX=3673 GN=LOC111020305 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYESWKE+LRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+F+W+D HDGEAIE
Sbjct: 589 MPEYESWKESLRGNASGWSIKYYKGLGTSTSKEGREYFEQLGKHKKDFVWQDDHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFEP 81
           LAFSKKKIEERKNWLR FEP
Sbjct: 649 LAFSKKKIEERKNWLRHFEP 668

[Close]

BLAST of Lcy01g003300 vs. ExPASy TrEMBL
Match: A0A6J1DIB5 (DNA topoisomerase 2 OS=Momordica charantia OX=3673 GN=LOC111020305 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYESWKE+LRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+F+W+D HDGEAIE
Sbjct: 589 MPEYESWKESLRGNASGWSIKYYKGLGTSTSKEGREYFEQLGKHKKDFVWQDDHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFEP 81
           LAFSKKKIEERKNWLR FEP
Sbjct: 649 LAFSKKKIEERKNWLRHFEP 668

[Close]

BLAST of Lcy01g003300 vs. ExPASy TrEMBL
Match: A0A6J1F9E0 (DNA topoisomerase 2 OS=Cucurbita moschata OX=3662 GN=LOC111442005 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 589 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 649 LAFSKKKIEERKNWLRQFE 667

[Close]

BLAST of Lcy01g003300 vs. NCBI nr
Match: XP_023527826.1 (DNA topoisomerase 2 isoform X6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 589 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 649 LAFSKKKIEERKNWLRQFE 667

[Close]

BLAST of Lcy01g003300 vs. NCBI nr
Match: KAG7018075.1 (DNA topoisomerase 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 589 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 649 LAFSKKKIEERKNWLRQFE 667

[Close]

BLAST of Lcy01g003300 vs. NCBI nr
Match: XP_022935016.1 (DNA topoisomerase 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 589 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 649 LAFSKKKIEERKNWLRQFE 667

[Close]

BLAST of Lcy01g003300 vs. NCBI nr
Match: XP_022982563.1 (DNA topoisomerase 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 588 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 647

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 648 LAFSKKKIEERKNWLRQFE 666

[Close]

BLAST of Lcy01g003300 vs. NCBI nr
Match: XP_023527825.1 (DNA topoisomerase 2 isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE+WK+NLRGNASGWSIKYYKGLGTSTSKEGREYF+QL KHKK+FIW+D HDGEAIE
Sbjct: 589 MPEYEAWKDNLRGNASGWSIKYYKGLGTSTSKEGREYFEQLAKHKKDFIWQDEHDGEAIE 648

Query: 61  LAFSKKKIEERKNWLRQFE 80
           LAFSKKKIEERKNWLRQFE
Sbjct: 649 LAFSKKKIEERKNWLRQFE 667

[Close]

BLAST of Lcy01g003300 vs. TAIR 10
Match: AT3G23890.1 (topoisomerase II )

HSP 1 Score: 127.9 bits (320), Expect = 6.7e-30
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE WKE+L+GNA+GW IKYYKGLGTST++EG+EYF  L  HKK+F+W+D  DGEAIE
Sbjct: 592 MPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIE 651

Query: 61  LAFSKKKIEERKNWLRQFEP 81
           LAFSKKKIE RKNWL  + P
Sbjct: 652 LAFSKKKIEARKNWLSSYVP 671

[Close]

BLAST of Lcy01g003300 vs. TAIR 10
Match: AT3G23890.2 (topoisomerase II )

HSP 1 Score: 127.9 bits (320), Expect = 6.7e-30
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MLEYESWKENLRGNASGWSIKYYKGLGTSTSKEGREYFDQLEKHKKEFIWKDAHDGEAIE 60
           M EYE WKE+L+GNA+GW IKYYKGLGTST++EG+EYF  L  HKK+F+W+D  DGEAIE
Sbjct: 592 MPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIE 651

Query: 61  LAFSKKKIEERKNWLRQFEP 81
           LAFSKKKIE RKNWL  + P
Sbjct: 652 LAFSKKKIEARKNWLSSYVP 671

The following BLAST results are available for this feature:

BLAST of Lcy01g003300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30182	9.4e-29	71.25	DNA topoisomerase 2 OS=Arabidopsis thaliana OX=3702 GN=TOP2 PE=2 SV=2	[more]
O24308	2.2e-25	67.50	DNA topoisomerase 2 OS=Pisum sativum OX=3888 GN=TOP2 PE=2 SV=1	[more]
P41001	3.0e-19	56.58	DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 / Thailand) OX=5839 GN=...	[more]
O42130	1.1e-16	55.26	DNA topoisomerase 2-alpha OS=Gallus gallus OX=9031 GN=TOP2A PE=2 SV=2	[more]
Q64399	3.1e-16	52.63	DNA topoisomerase 2-beta OS=Cricetulus longicaudatus OX=10030 GN=TOP2B PE=2 SV=1	[more]

BLAST of Lcy01g003300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J555	5.9e-34	89.87	DNA topoisomerase 2 OS=Cucurbita maxima OX=3661 GN=LOC111481402 PE=3 SV=1	[more]
A0A6J1IWX9	5.9e-34	89.87	DNA topoisomerase 2 OS=Cucurbita maxima OX=3661 GN=LOC111481402 PE=3 SV=1	[more]
A0A6J1DGT3	5.9e-34	88.75	DNA topoisomerase 2 OS=Momordica charantia OX=3673 GN=LOC111020305 PE=3 SV=1	[more]
A0A6J1DIB5	5.9e-34	88.75	DNA topoisomerase 2 OS=Momordica charantia OX=3673 GN=LOC111020305 PE=3 SV=1	[more]
A0A6J1F9E0	5.9e-34	89.87	DNA topoisomerase 2 OS=Cucurbita moschata OX=3662 GN=LOC111442005 PE=3 SV=1	[more]

BLAST of Lcy01g003300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527826.1	1.2e-33	89.87	DNA topoisomerase 2 isoform X6 [Cucurbita pepo subsp. pepo]	[more]
KAG7018075.1	1.2e-33	89.87	DNA topoisomerase 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935016.1	1.2e-33	89.87	DNA topoisomerase 2 isoform X2 [Cucurbita moschata]	[more]
XP_022982563.1	1.2e-33	89.87	DNA topoisomerase 2 isoform X2 [Cucurbita maxima]	[more]
XP_023527825.1	1.2e-33	89.87	DNA topoisomerase 2 isoform X5 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy01g003300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23890.1	6.7e-30	71.25	topoisomerase II	[more]
AT3G23890.2	6.7e-30	71.25	topoisomerase II	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031660	C-terminal associated domain of TOPRIM	PFAM	PF16898	TOPRIM_C	coord: 2..82 e-value: 1.8E-29 score: 102.6
None	No IPR available	GENE3D	3.30.1490.30		coord: 1..38 e-value: 3.8E-16 score: 60.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..144
None	No IPR available	PANTHER	PTHR10169	DNA TOPOISOMERASE/GYRASE	coord: 1..83
IPR013760	DNA topoisomerase, type IIA-like domain superfamily	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003300.1	Lcy01g003300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
molecular_function	GO:0046872	metal ion binding