Lcy01g002940 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCTCCTCCTTCCCTCTGCCTAATTTGCATTTTCTCTAAAGCTTTCCAATTCCTTCTTTTTTCTGAAATCATGTCTCTATTTGTTCCTATCAACCCAAATTTGGATCGAAGCCTTAAACACTTCCCCGACGAGGCCATCACTAGTTTCGTATATACTAAACATCGTGACGACGATAAAATCAAGATCGATGTTGACAATTATATTACACTTGTTGATAGCATCATCACAATGGTTGATCAAATCACCACAAATGTTTCTCAAGTAGGCATTTTTATATAGTATCTACTTTCCTATAATTTCTATTAATCTTTTTTTCTAATTTATATATTTGTCATATTTATAACCGATTGTAGGGTATCGAAGGACGTTTGATACTTTCAGATGATTTCTTGTATGTCAATATCGTTGATCCACCACTCCATACTCTTCACCAGATATCAAGCAAGGTTATTAAAAAAAGAGCTAAATTGATCTTAATCTTAAATAACATATTTTTTAATAATTTTTTATACCATATACATTTGAGGGTAAAATATACTTTTAGTGCTTAAGATTTGGAGTTAGTGTCTATTTGGATCTTGAGGTTTCAACGGTCATGAAATTTGGAAAATTGTTCTAGATGGTTTCTCAGTCAATTTAACCATTAATTAACTGACAAAAATATAAACTACATTGGTTGGTTAGATGAAAATGTTCTCTGTTGATATGCTTTGAATCTGTTATATGAAGCACTCCGAATGATCAAGTACAGGGGTCTCGCTGTATAAACCCTCTTAACCTAATATGTCCTAATCTCTGTAATCTGCATATGTTTTTTCTCCTCACTAATAAGATTATTCTCTCCCTCTGCCCGTGGATGTAGCTAACACACCGTTAGTGAACCACGTAAATTCTGTGTCGTTCTTGATTTGTTGATTTATGATTTCTGTCATAACATTCTCTCTTTCCCTTCTTCTTTCCTATCTCCTTCTCCCCTCTCTCAATGAACAACGTTGCCTTTGCCGCTATATCAACCATCCTCAGTCGTCTACCCTTGCCACTCGCCTCCTTCCAGTCATATGTTGTGCCGCTCCTTTTGATTGTCTGTCGTGCTTCTCTTTAGATCTGAAACGAAGAGGTTCATTTTAGATCTAAATCTATGTCAACTTCCTTTACATATGTTGTCATCACTCCCTTTTGTTAGTCGTTGGAGACTTTGTTTCATTTCAAATAGATCTGGAATGAAGACATTCGTGATCTGAAACAAAAGTTTTCTTTCATGCCCTAGATCTGGGATGAAGAGGTTGAACGAACCTCTTCGTTCTAGATTTGAAGAAGGAGAAGAAGAAAGAGGGAGGAAGAAGAAGAAGGAAAGAGAAAAAAAATAACACCAAACCTCACCCATACATATTAGTCAAACCAACAAATATATAGTTTTAGCCATTAAACTACTACATCACATTTTCGTTAGTCACAAATAATTGACATCAAAGGTTTTTTATTTTGAAACGTAGAAACCAAATAGACACCAACTCCAAATCCCAGGAGATCACAAAAGCGTATTTTGCCTTACATTTAATTTTACACGCAATAATGATGCATTTATAATATCTTTCAAGATTTCATAAAACACATATATTTTAATTTGCATTTGAAACTAACTTCTAAAATATCTATATTATTATTGTTAACTGGTGGAATTTGATCTCTCTCAGATGGCATACAAAGCTCCAGGTATAGAAAAAGCACACCAAACAACACTAGACATTCTTGATATATTGGTAAGCTACCCATGGGAAGCCAAAGCAGTGCTAACATTGACAGCTTTTGCTACTGAATATGGAGACATATGGCACCTCAACCATTATCATTCACTGTTAGATCCACTCGCAAAATCACTGGCAATGATCAAGCGAGTGCCGTTCTTGACGAAGCAATTAAACTCGATCAAATATCGACAAGTGCTTCTTGGCCCCAACAGTTTAATCTATGGTTGCTTACGAGCGATCAAATATATGAATCAAATCAAGAAATTCTCCAGATATGATGTAAAGGAACTTTCAGAGTTGTCTTCGGTTCTTCGCCAAATTCCATTGGTTTCTTATTGGGTAATACACATTATTGTTGCTGCCCGAATTGAGATTTCAAGTTATTTGAAGCAGACCGAGTAAGTATTATAATTATCCTTTGTCGATGCTAATGAGCTTGATGATTTCTTTTTGTAGTTATAGTTGTCAAATTTTGTTTGAATTTTATTGGGATGCTTGGTAGTGATTAATCTATAGTAAAAAATTGACTTTTCCAAAGGCTGATGAGAGTATTTTTAGCTAACGTAATTTTGAAAAATATGATTTTATAGTCATGCTTCCTTTAAAAAGACAATTTTAAAAAAAAAAAAAATAATTAAGGGTATAACTAAATATTTGGAAATATTCTCCCCACTTATTATAACAAACAAGTTTCTAAACCCGTTTTATTTCGATAATTTGCGGTGGGTGGCAAATAAGAATTATATAATTGCAAATATAGCACAATGTAAAATTTTTTTGCAAATATAGCAAAATCTATCCGAGTATATTACTGATAGACTCTGGTTAATTAGAATCTATCTGATAGACTTCGATTATCAGAGTTTATCAGCGATAGACTCTGATTAATCAGAATCTATCAGTGTCTATTGCTGATAGATTTCGGTTAATCGAAATCTATCAGTGACTATCATTGATAGACTTTGATTAATCAAATTCTATCAGTGATAGTCACTGATAGATTTTGATTAATCGGAGTCTATCAGCGATAGACACTGATAGACTTTGAATAATCAGAGTCTATCAATGATAGAAACAGATAGAATCTGACGACAGCTTTTTGGTCTTGTACAATTAATTTTGCTATATATGCAATTAGTTTGTAACTGTATTATATTTGCTATTAATTTGATCCAATTTGTCATCTATGCAACTGTCCCTTTTATTTCTCTACTCAACCTCTCATTTGTTGGTCGTTTTTATTTAAGTAAGGACCATTCATTGGTTGTCGGGTATGTAGGTATCTCCCTACACACCACCACTAACACGTTGACAATTATGAGAAATAAATTTTTTTCTCATTTTCTACCTTTCTCTCACATTTATGCAACCAAGTATTTTTCTTTAAGAAAAATGAGGAAAAGAGAGAAAGAAAGAAAAGTTTTCTTTTCTTTTTCTTTTTCTTTTTTCTATTAATACTTTTTGCATTAGAGTAAAAAAAAATGTAAATAAGCTTATTTAAAGAAGATTAAAAATAAAATGAGTATATGTAGTAAACCCTAACAAGCTCTCAACTTATATAATTTACAAAATTTAGATATTTTTGTAAAAATCTTTGGACGATAATGATACTTATTTTATTTTACTTGAAAATGACTCATCGAATGCCTTTTGTTATTTAATTCTAAATTTGAGAATTTTAATACTTATTTTCTTTATTTGGCCTTTAGTAGAATAACTTAATTATTAAGGATATTAAAAGTGTTTCAATAACGGTTTATGTGGCTATATTTTCAGGGGCCAATCACAAAAGTATTTGAATGAATTATCCGAAAAGATTAGCTCTATACTCAACACGCTTGAAAATCATCTCAACCTCATTCAAGAACAACAAGCTCAATTTTCAGTCATGTATATAAGATAGAGGATGAGGATGGAGCCAATGTACCATAGGAGGGCAATTTCTCAACCTTCTAAGTTTTTGTTTTAAAAAAGTCATCTATATATATATAGCGTTTTGATCAAAAAAACCAAATGAAAAAATTAAAACTTTCCCTATAAATTAAAACACCCAATTGAAGTTGTCTTCCAAAAAAAAAAAAAAAATGAAGATGTCTTTATTTTTTTTTCCCTTGTATTTTGTTGAATGTGGACTTTTTAATATGATAATTGCAATAGAAGGTCGAGTCCCTGCCTTATGTGGGGTTATTGCTCTGCTTTTGTACTAAAA ATCTCCTCCTTCCCTCTGCCTAATTTGCATTTTCTCTAAAGCTTTCCAATTCCTTCTTTTTTCTGAAATCATGTCTCTATTTGTTCCTATCAACCCAAATTTGGATCGAAGCCTTAAACACTTCCCCGACGAGGCCATCACTAGTTTCGTATATACTAAACATCGTGACGACGATAAAATCAAGATCGATGTTGACAATTATATTACACTTGTTGATAGCATCATCACAATGGTTGATCAAATCACCACAAATGTTTCTCAAGGTATCGAAGGACGTTTGATACTTTCAGATGATTTCTTGTATGTCAATATCGTTGATCCACCACTCCATACTCTTCACCAGATATCAAGCAAGATGGCATACAAAGCTCCAGGTATAGAAAAAGCACACCAAACAACACTAGACATTCTTGATATATTGGTAAGCTACCCATGGGAAGCCAAAGCAGTGCTAACATTGACAGCTTTTGCTACTGAATATGGAGACATATGGCACCTCAACCATTATCATTCACTGTTAGATCCACTCGCAAAATCACTGGCAATGATCAAGCGAGTGCCGTTCTTGACGAAGCAATTAAACTCGATCAAATATCGACAAGTGCTTCTTGGCCCCAACAGTTTAATCTATGGTTGCTTACGAGCGATCAAATATATGAATCAAATCAAGAAATTCTCCAGATATGATGTAAAGGAACTTTCAGAGTTGTCTTCGGTTCTTCGCCAAATTCCATTGGTTTCTTATTGGGTAATACACATTATTGTTGCTGCCCGAATTGAGATTTCAAGTTATTTGAAGCAGACCGAGGGCCAATCACAAAAGTATTTGAATGAATTATCCGAAAAGATTAGCTCTATACTCAACACGCTTGAAAATCATCTCAACCTCATTCAAGAACAACAAGCTCAATTTTCAGTCATGTATATAAGATAGAGGATGAGGATGGAGCCAATGTACCATAGGAGGGCAATTTCTCAACCTTCTAAGTTTTTGTTTTAAAAAAGTCATCTATATATATATAGCGTTTTGATCAAAAAAACCAAATGAAAAAATTAAAACTTTCCCTATAAATTAAAACACCCAATTGAAGTTGTCTTCCAAAAAAAAAAAAAAAATGAAGATGTCTTTATTTTTTTTTCCCTTGTATTTTGTTGAATGTGGACTTTTTAATATGATAATTGCAATAGAAGGTCGAGTCCCTGCCTTATGTGGGGTTATTGCTCTGCTTTTGTACTAAAA ATGTCTCTATTTGTTCCTATCAACCCAAATTTGGATCGAAGCCTTAAACACTTCCCCGACGAGGCCATCACTAGTTTCGTATATACTAAACATCGTGACGACGATAAAATCAAGATCGATGTTGACAATTATATTACACTTGTTGATAGCATCATCACAATGGTTGATCAAATCACCACAAATGTTTCTCAAGGTATCGAAGGACGTTTGATACTTTCAGATGATTTCTTGTATGTCAATATCGTTGATCCACCACTCCATACTCTTCACCAGATATCAAGCAAGATGGCATACAAAGCTCCAGGTATAGAAAAAGCACACCAAACAACACTAGACATTCTTGATATATTGGTAAGCTACCCATGGGAAGCCAAAGCAGTGCTAACATTGACAGCTTTTGCTACTGAATATGGAGACATATGGCACCTCAACCATTATCATTCACTGTTAGATCCACTCGCAAAATCACTGGCAATGATCAAGCGAGTGCCGTTCTTGACGAAGCAATTAAACTCGATCAAATATCGACAAGTGCTTCTTGGCCCCAACAGTTTAATCTATGGTTGCTTACGAGCGATCAAATATATGAATCAAATCAAGAAATTCTCCAGATATGATGTAAAGGAACTTTCAGAGTTGTCTTCGGTTCTTCGCCAAATTCCATTGGTTTCTTATTGGGTAATACACATTATTGTTGCTGCCCGAATTGAGATTTCAAGTTATTTGAAGCAGACCGAGGGCCAATCACAAAAGTATTTGAATGAATTATCCGAAAAGATTAGCTCTATACTCAACACGCTTGAAAATCATCTCAACCTCATTCAAGAACAACAAGCTCAATTTTCAGTCATGTATATAAGATAG MSLFVPINPNLDRSLKHFPDEAITSFVYTKHRDDDKIKIDVDNYITLVDSIITMVDQITTNVSQGIEGRLILSDDFLYVNIVDPPLHTLHQISSKMAYKAPGIEKAHQTTLDILDILVSYPWEAKAVLTLTAFATEYGDIWHLNHYHSLLDPLAKSLAMIKRVPFLTKQLNSIKYRQVLLGPNSLIYGCLRAIKYMNQIKKFSRYDVKELSELSSVLRQIPLVSYWVIHIIVAARIEISSYLKQTEGQSQKYLNELSEKISSILNTLENHLNLIQEQQAQFSVMYIR Homology
BLAST of Lcy01g002940 vs. ExPASy Swiss-Prot
Match: Q9SS87 (Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 4.3e-17 Identity = 64/226 (28.32%), Postives = 115/226 (50.88%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy Swiss-Prot
Match: Q9FXE2 (Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana OX=3702 GN=SEOC PE=4 SV=2) HSP 1 Score: 57.0 bits (136), Expect = 4.1e-07 Identity = 62/254 (24.41%), Postives = 113/254 (44.49%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy Swiss-Prot
Match: Q93XX2 (Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana OX=3702 GN=SEOA PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.9e-05 Identity = 42/158 (26.58%), Postives = 75/158 (47.47%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy TrEMBL
Match: A0A6J1CAZ1 (protein SIEVE ELEMENT OCCLUSION B-like OS=Momordica charantia OX=3673 GN=LOC111009572 PE=4 SV=1) HSP 1 Score: 420.6 bits (1080), Expect = 5.2e-114 Identity = 213/272 (78.31%), Postives = 238/272 (87.50%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy TrEMBL
Match: A0A0A0LNQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G193350 PE=4 SV=1) HSP 1 Score: 413.7 bits (1062), Expect = 6.3e-112 Identity = 206/272 (75.74%), Postives = 243/272 (89.34%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy TrEMBL
Match: A0A6J1KK25 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita maxima OX=3661 GN=LOC111494729 PE=4 SV=1) HSP 1 Score: 405.2 bits (1040), Expect = 2.3e-109 Identity = 208/296 (70.27%), Postives = 241/296 (81.42%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy TrEMBL
Match: A0A6J1EX23 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucurbita moschata OX=3662 GN=LOC111436942 PE=4 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 5.0e-109 Identity = 208/296 (70.27%), Postives = 240/296 (81.08%), Query Frame = 0
BLAST of Lcy01g002940 vs. ExPASy TrEMBL
Match: A0A1S3CN79 (protein SIEVE ELEMENT OCCLUSION B-like OS=Cucumis melo OX=3656 GN=LOC103502853 PE=4 SV=1) HSP 1 Score: 392.5 bits (1007), Expect = 1.5e-105 Identity = 196/273 (71.79%), Postives = 238/273 (87.18%), Query Frame = 0
BLAST of Lcy01g002940 vs. NCBI nr
Match: XP_022138387.1 (protein SIEVE ELEMENT OCCLUSION B-like [Momordica charantia]) HSP 1 Score: 420.6 bits (1080), Expect = 1.1e-113 Identity = 213/272 (78.31%), Postives = 238/272 (87.50%), Query Frame = 0
BLAST of Lcy01g002940 vs. NCBI nr
Match: XP_038906603.1 (protein SIEVE ELEMENT OCCLUSION B-like [Benincasa hispida]) HSP 1 Score: 415.2 bits (1066), Expect = 4.5e-112 Identity = 207/272 (76.10%), Postives = 242/272 (88.97%), Query Frame = 0
BLAST of Lcy01g002940 vs. NCBI nr
Match: XP_004150407.1 (protein SIEVE ELEMENT OCCLUSION B [Cucumis sativus]) HSP 1 Score: 413.7 bits (1062), Expect = 1.3e-111 Identity = 206/272 (75.74%), Postives = 243/272 (89.34%), Query Frame = 0
BLAST of Lcy01g002940 vs. NCBI nr
Match: KAE8651827.1 (hypothetical protein Csa_006561 [Cucumis sativus]) HSP 1 Score: 413.7 bits (1062), Expect = 1.3e-111 Identity = 206/272 (75.74%), Postives = 243/272 (89.34%), Query Frame = 0
BLAST of Lcy01g002940 vs. NCBI nr
Match: XP_023000469.1 (protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita maxima]) HSP 1 Score: 405.2 bits (1040), Expect = 4.6e-109 Identity = 208/296 (70.27%), Postives = 241/296 (81.42%), Query Frame = 0
BLAST of Lcy01g002940 vs. TAIR 10
Match: AT3G01680.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 90.1 bits (222), Expect = 3.1e-18 Identity = 64/226 (28.32%), Postives = 115/226 (50.88%), Query Frame = 0
BLAST of Lcy01g002940 vs. TAIR 10
Match: AT1G67790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 9.9e-09 Identity = 61/259 (23.55%), Postives = 116/259 (44.79%), Query Frame = 0
BLAST of Lcy01g002940 vs. TAIR 10
Match: AT3G01670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06 Identity = 42/158 (26.58%), Postives = 75/158 (47.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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