Lag0042155 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042155
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransmembrane protein
Locationchr13: 37537260 .. 37538352 (-)
RNA-Seq ExpressionLag0042155
SyntenyLag0042155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCGGTGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAGGTGATGGAATCGCCTCCGCTCTATCTTCTTCCGATCAGTCTCGTTTGTTGCTTGCCACCAGACCTCCCAGGTACTTCCTCCTCTCTCTCTTCCTTCTCTCCTTTCACTGTCTTTGATTTTGTCCTCACTTCTAAAATTGGAATATTGAGGACACTCTTCACATTTCGGACAACAGTGATTCTTCTCTGTGATCTGTGAATTGTATTGGATTACTCTCCCCTGTTACAATGTGTTAGGTTGGGGCACACCGTTCAAAACTTTTTCTTAATCGTTAGGATTCTTTTTCTCTTTTCTTCTTTAATGGTTCACTTCCATTTTCATTTTATTCAGTATTACAAGGTGGTCGGGTCCTTTGTGCTATTATTTAGAACATATAATTAGAGAGGAATTTGAGGTATTGATATATGATTAAATTTACGGTAATCCATCTAACTTTAGCTTTTGGGTTGATATATTTCATTTCGGATAACCACCATTCCTTAGCTTAATAGTCACTAGGACAAGTGAAAATGTTGGACTCTATGGTGATTAGTTACGAGTTCCACGCCCCGTTTAAGAACATTAAATAAAAGCTTCATGATAGAACGTTCCCTAGAACTTTTTTTTTGTAACTATCCTTTATTTTCAATTCTTTAACACCTATAATTGTTGTGTTTGTTTTGAGGGCTCTAACCATTTTTTATCTTTTTGAGGATGCTACTCTCTCTTCTGTTTAGCTTAATAAAGTCAGTCTTTCCTCAAAAGAAAAAGAAGGATTGAGAGAATTTATGTGCTAGATTGAATTTCATTTCTTTTAAGTTTTGAGGACTTTTGTGATTGTTTCTTTTCATCTGGACCGAATAGAAACTATAGAAGTTCAGTCTTCCTCATTTGTTCTAATACGATCAATGTGACTGGTACGAGAGCAGGAAAGTAGTATCAATGTTGACTTGTTCGAAGCTATGCACTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTCAATCGATGGGTTTCCAAACTGTTGAGGAGATTGAAAGATGATTGA

mRNA sequence

ATGAGATCGGTGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAGGTGATGGAATCGCCTCCGCTCTATCTTCTTCCGATCAGTCTCGTTTGTTGCTTGCCACCAGACCTCCCAGGAAAGTAGTATCAATGTTGACTTGTTCGAAGCTATGCACTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTCAATCGATGGGTTTCCAAACTGTTGAGGAGATTGAAAGATGATTGA

Coding sequence (CDS)

ATGAGATCGGTGGCTTCACCTTCTTCAGTCGAAGCTTTGAGGAATGGAGGTGATGGAATCGCCTCCGCTCTATCTTCTTCCGATCAGTCTCGTTTGTTGCTTGCCACCAGACCTCCCAGGAAAGTAGTATCAATGTTGACTTGTTCGAAGCTATGCACTATTTGCTTTGTTGCCGGGGTGGTTGTTGGTTACTCGTTAAAGCGATGTGTCAATCGATGGGTTTCCAAACTGTTGAGGAGATTGAAAGATGATTGA

Protein sequence

MRSVASPSSVEALRNGGDGIASALSSSDQSRLLLATRPPRKVVSMLTCSKLCTICFVAGVVVGYSLKRCVNRWVSKLLRRLKDD
Homology
[Close]
BLAST of Lag0042155 vs. NCBI nr
Match: XP_022974252.1 (uncharacterized protein LOC111472885 [Cucurbita maxima])

HSP 1 Score: 140.2 bits (352), Expect = 8.2e-30
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 0 

Query: 1  MRSVASPSSVEALRNGGDGIASALSSSDQSRLLLATRPPRKVVSMLTCSKLCTICFVAGV 60
          M+S A PSSVEALR+ G+GIASALSSSDQSRLLLATRPPR+VVS+LTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRS-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          +VGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 LVGYSLKRCVNRWVSKLLRRLKDD 83

[Close]
BLAST of Lag0042155 vs. NCBI nr
Match: XP_038893067.1 (uncharacterized protein LOC120081950 [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MRSVASPSSVEALRNGGDGIASALSSSDQSRLLLATRPPRKVVSMLTCSKLCTICFVAGV 60
          M+S  S SSVE LRN G+GIASALSSSDQSRLLLATRPPR+VVS+ TCSKLC +CFVAGV
Sbjct: 1  MKSGVSSSSVEVLRNRGEGIASALSSSDQSRLLLATRPPRQVVSIWTCSKLCAVCFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKRCVNRWVSKLLRRLKDD
Sbjct: 61 VVGYSLKRCVNRWVSKLLRRLKDD 84

[Close]
BLAST of Lag0042155 vs. NCBI nr
Match: XP_023540347.1 (uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 hypothetical protein SDJN03_10201, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028499.1 hypothetical protein SDJN02_09680 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-29
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1  MRSVASPSSVEALRNGGDGIASALSSSDQSRLLLATRPPRKVVSMLTCSKLCTICFVAGV 60
          M+S A PSSVEALRN G+GIASALSSSDQSRLLLATRPPR+VVS+LTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKR VNRWVSKLLRRLKDD
Sbjct: 61 VVGYSLKRRVNRWVSKLLRRLKDD 83

[Close]
BLAST of Lag0042155 vs. NCBI nr
Match: XP_022956291.1 (uncharacterized protein LOC111458016 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 6.9e-29
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1  MRSVASPSSVEALRNGGDGIASALSSSDQSRLLLATRPPRKVVSMLTCSKLCTICFVAGV 60
          M+S A PSSVEALRN G+GIASALSSSDQSRLLLATRPPR+VVS+LTCSKLC ICFVAGV
Sbjct: 1  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKDD 85
          VVGYSLKR VNRWVSKLLRRLK+D
Sbjct: 61 VVGYSLKRRVNRWVSKLLRRLKED 83

[Close]
BLAST of Lag0042155 vs. NCBI nr
Match: KGN51411.1 (hypothetical protein Csa_007923 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 0 

Query: 1  MRSVASPSSVEALRNGGDGIASALSSSDQSRLLLATRPPRKVVSMLTCSKLCTICFVAGV 60
          M+S  S SSVEALRN G+GIAS+LSS D SR LLATRPPR+VVS+ TCSKLC +CFV GV
Sbjct: 1  MKSGISSSSVEALRNKGEGIASSLSSYDHSRFLLATRPPRQVVSIWTCSKLCAVCFVTGV 60

Query: 61 VVGYSLKRCVNRWVSKLLRRLKD 84
          VVGYSLKRCVNRW+SKLLRRLKD
Sbjct: 61 VVGYSLKRCVNRWISKLLRRLKD 83

The following BLAST results are available for this feature:
BLAST of Lag0042155 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022974252.18.2e-3088.10uncharacterized protein LOC111472885 [Cucurbita maxima][more]
XP_038893067.11.1e-2985.71uncharacterized protein LOC120081950 [Benincasa hispida][more]
XP_023540347.12.4e-2989.29uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo] >KAG6597021.1 ... [more]
XP_022956291.16.9e-2988.10uncharacterized protein LOC111458016 [Cucurbita moschata][more]
KGN51411.11.1e-2679.52hypothetical protein Csa_007923 [Cucumis sativus][more]
BLAST of Lag0042155 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042155.1Lag0042155.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane