Lag0041720 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041720
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 25069022 .. 25070998 (-)
RNA-Seq ExpressionLag0041720
SyntenyLag0041720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAGAATGAAAGGATGAAGAGGAAGAAGATGGAGAAGAAGAAGGGAAGTAAAGAAATGGAGAAAAAATAAAATAATTAAAAAAATAATAATATTTTAATATTTTTTATTTTTTTATTTTAAAAAATTTTAAAAATAATTTTCTTTATTAAAATAATAGTGCCACGTCAGCAACTGTTAAAATTTAACAGAAAAGTTGACGGCAGGGACCAAAATGCTCTTTATCTCAAAACTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAACTGTCACTTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCCTAAAATTTATCTAGATCTTATTTTCAGTTATTTGAATTCGGTTTAATTTGAATTAATAAAGATTTTCCATAATTTATTCGGCTTCTCTTGAGAATAAAAGATTAAATTTGATTTGATCGGATAAATTTAAATTTGAAAGATTTGATTTTCTTATTTTGAAATTCAAATACCGTATCCAAGATTCTTCAGGTTGTTGCAGCAAGATTATGGTTGGAGCAAAATAATCCGAATTAAAAGGGTTTCCGTTGGAAATTTATTATTTTTACCGTTGGATTTTGGCTTTGAATTTTCGCAGGTAAATTTGCATGCATCATCTGATGAAGCCACGTGTCGTAGAGCAATCAACCGAAGGCTTCAATGATGGACAGCACATCAATTTTTACCATGGGCGTTTTGGAATCCACGATTTTACCGTTGCTAGATTCAATTTTTCAAGTTACATTAAACGGTAATATAATTAATGTGCCAAATCTTTTCAGTTAGGATTTGAATTTGCTGGAGCCTTATTTATTCATAGACTCTGGTACGTTTCTTCTTACTTCATCTCTTTGTTTCAATCTTGCCATCTGCAATTTTCTTTCTTTCTCCCTTTCATTCTCTGCAAAACCATTTGAGTTATCTATGGCCAAAACAAGAGCTAGAAAGAGAGGGAGAGTGAAGAGGAGGAGGTATCGGTCACGCCGGAAGTGCAAAAAGGGAAAACCAAGAAGAAAAGAACGCCGGAGGAAAATGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGGCTGCAGAACATGAGGAAGTTCAGGAGGTGGCAGAAGTTGTTGCCACTACTGCGGAGGAAGGAAGTACTCAAGAACCTGAAGTGCAAAACCCAGATACGGTTCAAGAAAAGATTGCTGAGAAAAATCAAGAAACAGAGGTTGAGGAGCAGGCCGCAGGTATGCTTGAAAAAGAGAAAACACCGGAGCTGGAGACTCATGTTGAAGTTGTAATGCCTGAACCACCTAAGCGCCGCCGCATCAAACGGAATGTGGGTCGCATGAGGGTGATTTGGAACACTCCATCGCCTCCGACGTCGGACTCTGAGGAAGAAAAGAGGGAGGCTGAAAATAAGGCAAAGGAAGAAGAGGCAAGGAAGGCAGAAGAAGAGCGTTTGCACGAACAAAGAGAAAACAAGGGCAAAGGAATTGTCAAAGCATCGGGTGAGATTGAGGAGCCGAGGGTACCGTTCATTCGCTTCGTCAACGAACTCGCTAGAGCAAAAAATCAAGAGGTATTGAAGCGTGATTTCTTGTTTGAGCGGGGATTTGGCAGTGATTTGCCTAGGTTCTTGGAGTCTGGAATAGCGAACCTTGGGTGGAGGCAGTTTTGTGCGAAGCCTGATCCTGTCAATGCCAACATCGTGCGGGAATTCTACGCCAATCTTGACGTTAAGGATGATTTTGAAGTTATAGTGCGAGGAGTGCCTATACAATGGAGCCCAGAGGCCATTAATAATTTGTTTGATCTCCAGGACTTTCCACATGCAGTTTTTAATGAGATGATGGTTGCCCCATCGAGCGACCAATTAAGTGCGGCGGTCCGAGAGGTAGGTGTTGAGGGCACTACAACAAATTTGGCTTTTAATGTCGGGCAATGCCCGACATTAAAAGTCTTTAATGTCGGTCACTGA

mRNA sequence

ATGAAGAAGAAGAATGAAAGGATGAAGAGGAAGAAGATGGAGAAGAAGAAGGGAAAGAGGGAGAGTGAAGAGGAGGAGGTATCGGTCACGCCGGAAGTGCAAAAAGGGAAAACCAAGAAGAAAAGAACGCCGGAGGAAAATGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGGCTGCAGAACATGAGGAAGTTCAGGAGGTGGCAGAAGTTGTTGCCACTACTGCGGAGGAAGGAAGTACTCAAGAACCTGAAGTGCAAAACCCAGATACGGTTCAAGAAAAGATTGCTGAGAAAAATCAAGAAACAGAGGTTGAGGAGCAGGCCGCAGGTATGCTTGAAAAAGAGAAAACACCGGAGCTGGAGACTCATGTTGAAGTTGTAATGCCTGAACCACCTAAGCGCCGCCGCATCAAACGGAATGTGGGTCGCATGAGGGTGATTTGGAACACTCCATCGCCTCCGACGTCGGACTCTGAGGAAGAAAAGAGGGAGGCTGAAAATAAGGCAAAGGAAGAAGAGGCAAGGAAGGCAGAAGAAGAGCGTTTGCACGAACAAAGAGAAAACAAGGGCAAAGGAATTGTCAAAGCATCGGGTGAGATTGAGGAGCCGAGGGTACCGTTCATTCGCTTCGTCAACGAACTCGCTAGAGCAAAAAATCAAGAGGTATTGAAGCGTGATTTCTTGTTTGAGCGGGGATTTGGCAGTGATTTGCCTAGGTTCTTGGAGTCTGGAATAGCGAACCTTGGGTGGAGGCAGTTTTGTGCGAAGCCTGATCCTGTCAATGCCAACATCGTGCGGGAATTCTACGCCAATCTTGACGTTAAGGATGATTTTGAAGTTATAGTGCGAGGAGTGCCTATACAATGGAGCCCAGAGGCCATTAATAATTTGTTTGATCTCCAGGACTTTCCACATGCAGTTTTTAATGAGATGATGGTTGCCCCATCGAGCGACCAATTAAGTGCGGCGGTCCGAGAGGTAGGTGTTGAGGGCACTACAACAAATTTGGCTTTTAATGTCGGGCAATGCCCGACATTAAAAGTCTTTAATGTCGGTCACTGA

Coding sequence (CDS)

ATGAAGAAGAAGAATGAAAGGATGAAGAGGAAGAAGATGGAGAAGAAGAAGGGAAAGAGGGAGAGTGAAGAGGAGGAGGTATCGGTCACGCCGGAAGTGCAAAAAGGGAAAACCAAGAAGAAAAGAACGCCGGAGGAAAATGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGGCTGCAGAACATGAGGAAGTTCAGGAGGTGGCAGAAGTTGTTGCCACTACTGCGGAGGAAGGAAGTACTCAAGAACCTGAAGTGCAAAACCCAGATACGGTTCAAGAAAAGATTGCTGAGAAAAATCAAGAAACAGAGGTTGAGGAGCAGGCCGCAGGTATGCTTGAAAAAGAGAAAACACCGGAGCTGGAGACTCATGTTGAAGTTGTAATGCCTGAACCACCTAAGCGCCGCCGCATCAAACGGAATGTGGGTCGCATGAGGGTGATTTGGAACACTCCATCGCCTCCGACGTCGGACTCTGAGGAAGAAAAGAGGGAGGCTGAAAATAAGGCAAAGGAAGAAGAGGCAAGGAAGGCAGAAGAAGAGCGTTTGCACGAACAAAGAGAAAACAAGGGCAAAGGAATTGTCAAAGCATCGGGTGAGATTGAGGAGCCGAGGGTACCGTTCATTCGCTTCGTCAACGAACTCGCTAGAGCAAAAAATCAAGAGGTATTGAAGCGTGATTTCTTGTTTGAGCGGGGATTTGGCAGTGATTTGCCTAGGTTCTTGGAGTCTGGAATAGCGAACCTTGGGTGGAGGCAGTTTTGTGCGAAGCCTGATCCTGTCAATGCCAACATCGTGCGGGAATTCTACGCCAATCTTGACGTTAAGGATGATTTTGAAGTTATAGTGCGAGGAGTGCCTATACAATGGAGCCCAGAGGCCATTAATAATTTGTTTGATCTCCAGGACTTTCCACATGCAGTTTTTAATGAGATGATGGTTGCCCCATCGAGCGACCAATTAAGTGCGGCGGTCCGAGAGGTAGGTGTTGAGGGCACTACAACAAATTTGGCTTTTAATGTCGGGCAATGCCCGACATTAAAAGTCTTTAATGTCGGTCACTGA

Protein sequence

MKKKNERMKRKKMEKKKGKRESEEEEVSVTPEVQKGKTKKKRTPEENEAKKRRRQQRAAEHEEVQEVAEVVATTAEEGSTQEPEVQNPDTVQEKIAEKNQETEVEEQAAGMLEKEKTPELETHVEVVMPEPPKRRRIKRNVGRMRVIWNTPSPPTSDSEEEKREAENKAKEEEARKAEEERLHEQRENKGKGIVKASGEIEEPRVPFIRFVNELARAKNQEVLKRDFLFERGFGSDLPRFLESGIANLGWRQFCAKPDPVNANIVREFYANLDVKDDFEVIVRGVPIQWSPEAINNLFDLQDFPHAVFNEMMVAPSSDQLSAAVREVGVEGTTTNLAFNVGQCPTLKVFNVGH
Homology
[Close]
BLAST of Lag0041720 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 75.9 bits (185), Expect = 7.9e-10
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 0 

Query: 208 IRFVNELARAKNQE-VLKRDFLFERGFGSD------LPRFLESGIANLGWRQFCAKPDPV 267
           ++  +E A  + +E +  R    E+GF  D       P F+E  I    W+ FCA P+ +
Sbjct: 14  VKLKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDL 73

Query: 268 NANIVREFYANLDVKDDFEVIVRGVPIQWSPEAINNLFDLQDFPHAVFNEMMVAPSSDQL 327
            A +VREFYAN+   DD  V VRGV +  S EAIN ++ L D P    +E + A +  +L
Sbjct: 74  IAPLVREFYANMTNPDDDTVYVRGVQVPLSAEAINTIYGLGD-PVDEHSEFVEAITEPEL 133

Query: 328 SAAVREVGVEG 332
           +  +  V + G
Sbjct: 134 ATVLETVAIAG 143

The following BLAST results are available for this feature:
BLAST of Lag0041720 vs. NCBI nr
Match NameE-valueIdentityDescription
PON42276.17.9e-1034.35hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
BLAST of Lag0041720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0041720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0041720 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..189
NoneNo IPR availableCOILSCoilCoilcoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..191

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041720.1Lag0041720.1mRNA