Lag0041715 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041715
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Fanconi-associated nuclease
Location	chr13: 24843564 .. 24844681 (+)
RNA-Seq Expression	Lag0041715
Synteny	Lag0041715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTCGTTCAATTGCAAGGAAGATATTCAAGCCGAGGGCAGTAGATGAAGGAGGCTCGGCTGCCCAAAACAGAGGCAAAAAACATATGATTAAAGACCACAGCGTTTTGCAGCCTATTCCTCAGGCGCCAAAAAGAAGACAAAAAGGAAAGGCCCCAATGGAGGCCATGAGTGAAGTGCCAAGGAAATTTGTAGGCGAGGTTGCAGCCGCACATTATAAAGAGCTGAAGAACAAAGAGATAATGCTAGAAAAAGGCTTTGATGAAAATCTTGACAGCTTACCGCATATGCTGGCGGTTACAATTAGAAATCAGAATTGGCAAATCTTATGCCATCACCCCGAGCCAGCTGTCCCTAGCATTGTCAAGGAATTTTATGCAAATTTTCAAGATAACGGTGTTTGGAAAATAGTAGTGCGAGGGCAAATCGTGGAATGGAGTCCGTCTACTATTAATCAATTCTATGATATACCCGATTTCCCCTTTGCCATCTGCAATGCCATGATGATAACGCCTTCAGAAGAGCAGCTCAAGGCGACCTTGCAAAGTAAAAATAGCAACCGTTCCTTGATGTCCGCCTATGTGACTCCTGAAGCTAATGTGTGGCTTTGGTTTGCGAGGAACTGTCTTCTGCCCACCACGCACGACACCACGGTCTCAAAAGAGAGAATGCTCTTGGTTTTTCTATCATGAGTCTAATCAGTATAGATGTGGGTAGAATAATTGCAAAAGAAATCACCTCGTGTGCCCGTAAGAAAGCGGGAAAGTTATTCTTTCCTAACTTCATTACGGCTTTATGCTTAAGGGCAGGGGTGCAGTTGGAAGAAGGAGATGATCTCGCAGTCGACAAGGGAATTATAGATGCGGCGACTATCAAGCGATTAATGGGTGATGGTAAATCAAGGAAAACATCAACCGTAGCCAGCGAAATAGAAGAAATCCTTAGACAACAAAGAGAATTGTTGCAGCATGTGCAGCACCAAGGCGAGCAGCAAAGAGTTTATTGGGAATACGCATGGAAAAGAGACGAAATGGTCGAGAAGGCTTTTAACTCAAATCAAGAAGAGGCTCTACCACCTTTCCCTCCATTCCCTCATGACGTTTTAAGCCCTTGA

mRNA sequence

ATGGGTCCTCGTTCAATTGCAAGGAAGATATTCAAGCCGAGGGCAGTAGATGAAGGAGGCTCGGCTGCCCAAAACAGAGGCAAAAAACATATGATTAAAGACCACAGCGTTTTGCAGCCTATTCCTCAGGCGCCAAAAAGAAGACAAAAAGGAAAGGCCCCAATGGAGGCCATGAGTGAAGTGCCAAGGAAATTTGTAGGCGAGGTTGCAGCCGCACATTATAAAGAGCTGAAGAACAAAGAGATAATGCTAGAAAAAGGCTTTGATGAAAATCTTGACAGCTTACCGCATATGCTGGCGGTTACAATTAGAAATCAGAATTGGCAAATCTTATGCCATCACCCCGAGCCAGCTGTCCCTAGCATTGTCAAGGAATTTTATGCAAATTTTCAAGATAACGGTGTTTGGAAAATAGTAGTGCGAGGGCAAATCGTGGAATGGAGTCCGTCTACTATTAATCAATTCTATGATATACCCGATTTCCCCTTTGCCATCTGCAATGCCATGATGATAACGCCTTCAGAAGAGCAGCTCAAGGCGACCTTGCAAAGTAAAAATAGCAACCGTTCCTTGATGTCCGCCTATGTGACTCCTGAAGCTAATGTGTGGCTTTGGGCAGGGGTGCAGTTGGAAGAAGGAGATGATCTCGCAGTCGACAAGGGAATTATAGATGCGGCGACTATCAAGCGATTAATGGGTGATGGTAAATCAAGGAAAACATCAACCGTAGCCAGCGAAATAGAAGAAATCCTTAGACAACAAAGAGAATTGTTGCAGCATGTGCAGCACCAAGGCGAGCAGCAAAGAGTTTATTGGGAATACGCATGGAAAAGAGACGAAATGGTCGAGAAGGCTTTTAACTCAAATCAAGAAGAGGCTCTACCACCTTTCCCTCCATTCCCTCATGACGTTTTAAGCCCTTGA

Coding sequence (CDS)

ATGGGTCCTCGTTCAATTGCAAGGAAGATATTCAAGCCGAGGGCAGTAGATGAAGGAGGCTCGGCTGCCCAAAACAGAGGCAAAAAACATATGATTAAAGACCACAGCGTTTTGCAGCCTATTCCTCAGGCGCCAAAAAGAAGACAAAAAGGAAAGGCCCCAATGGAGGCCATGAGTGAAGTGCCAAGGAAATTTGTAGGCGAGGTTGCAGCCGCACATTATAAAGAGCTGAAGAACAAAGAGATAATGCTAGAAAAAGGCTTTGATGAAAATCTTGACAGCTTACCGCATATGCTGGCGGTTACAATTAGAAATCAGAATTGGCAAATCTTATGCCATCACCCCGAGCCAGCTGTCCCTAGCATTGTCAAGGAATTTTATGCAAATTTTCAAGATAACGGTGTTTGGAAAATAGTAGTGCGAGGGCAAATCGTGGAATGGAGTCCGTCTACTATTAATCAATTCTATGATATACCCGATTTCCCCTTTGCCATCTGCAATGCCATGATGATAACGCCTTCAGAAGAGCAGCTCAAGGCGACCTTGCAAAGTAAAAATAGCAACCGTTCCTTGATGTCCGCCTATGTGACTCCTGAAGCTAATGTGTGGCTTTGGGCAGGGGTGCAGTTGGAAGAAGGAGATGATCTCGCAGTCGACAAGGGAATTATAGATGCGGCGACTATCAAGCGATTAATGGGTGATGGTAAATCAAGGAAAACATCAACCGTAGCCAGCGAAATAGAAGAAATCCTTAGACAACAAAGAGAATTGTTGCAGCATGTGCAGCACCAAGGCGAGCAGCAAAGAGTTTATTGGGAATACGCATGGAAAAGAGACGAAATGGTCGAGAAGGCTTTTAACTCAAATCAAGAAGAGGCTCTACCACCTTTCCCTCCATTCCCTCATGACGTTTTAAGCCCTTGA

Protein sequence

MGPRSIARKIFKPRAVDEGGSAAQNRGKKHMIKDHSVLQPIPQAPKRRQKGKAPMEAMSEVPRKFVGEVAAAHYKELKNKEIMLEKGFDENLDSLPHMLAVTIRNQNWQILCHHPEPAVPSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMITPSEEQLKATLQSKNSNRSLMSAYVTPEANVWLWAGVQLEEGDDLAVDKGIIDAATIKRLMGDGKSRKTSTVASEIEEILRQQRELLQHVQHQGEQQRVYWEYAWKRDEMVEKAFNSNQEEALPPFPPFPHDVLSP

Homology

[Close]

BLAST of Lag0041715 vs. NCBI nr
Match: KAF4378427.1 (hypothetical protein F8388_021621 [Cannabis sativa])

HSP 1 Score: 75.9 bits (185), Expect = 6.9e-10
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 62  PRKFVGEVAAAHYKE-LKNKEIMLEKGF---DENLDSLPHMLAVTIRNQNWQILCHHPEP 121
           PRKF+ + A A Y++ +++KE  +E+G    D+N  S+P  L   I+ + W+ LC  P  
Sbjct: 618 PRKFISKAAEAKYRDSVRHKEFYIERGIIVGDDNFGSMPPWLIENIKKRKWEGLCEDPAS 677

Query: 122 AVPSIVKEFYANFQDNGVW--KIVVRGQIVEWSPSTINQFYDIPDF--PFAICNAMM 171
           AV  +VKEFYANF  +  W   I+VR   V +S   IN+F+ + +    F+ CN+ +
Sbjct: 678 AVCQVVKEFYANFLAS-EWPADIIVREVKVPFSDKLINEFFQLKNITCEFSKCNSKL 733

[Close]

BLAST of Lag0041715 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-08
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 64  KFVGEVAAAHYK-ELKNKEIMLEKGF----DENLDSLPHMLAVTIRNQNWQILCHHPEPA 123
           KF  E AA  Y+  ++N+ +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 24  KFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 83

Query: 124 VPSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMITPSEEQL 183
           +  +V+EFYAN  D     + VRG  V WS   IN  + + D P    +  +   +++ L
Sbjct: 84  IVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQDL 143

Query: 184 KATLQSKNS-----NRSLMSAY------VTPEANVW 204
              L++  +     N S   AY      +TP A VW
Sbjct: 144 ITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVW 177

[Close]

BLAST of Lag0041715 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-08
Identity = 50/156 (32.05%), Postives = 70/156 (44.87%), Query Frame = 0


Query: 64  KFVGEVAAAHYK-ELKNKEIMLEKGF----DENLDSLPHMLAVTIRNQNWQILCHHPEPA 123
           KF  E A   Y+  ++N+ +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 15  KFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 74

Query: 124 VPSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMITPSEEQL 183
           +  +V+EFYAN  D     + VRG  V WS   IN  + + D P    +  +   +E  L
Sbjct: 75  IVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHDL 134

Query: 184 KATLQS-----KNSNRSLMSAY------VTPEANVW 204
              L++        N S   AY      +TP A VW
Sbjct: 135 ITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVW 168

[Close]

BLAST of Lag0041715 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-07
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 64  KFVGEVAAAHYKE-LKNKEIMLEKGF-DENLDSL--PHMLAVTIRNQNWQILCHHPEPAV 123
           KF  E A   Y+E ++N+ +  EKGF  +N   L  P  +A  I   NWQ+ C HPE  +
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 124 PSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPD 161
             +V+EFYAN  +     + VRG  V  S   IN  Y + D
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGD 115

[Close]

BLAST of Lag0041715 vs. NCBI nr
Match: WP_205755446.1 (hypothetical protein, partial [Bacillus amyloliquefaciens])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-06
Identity = 43/140 (30.71%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 70  AAAHYKE---LKNKEIMLEKGFDENLDSLPHMLAVTIRNQNWQILCHHPEPAVPSIVKEF 129
           AAAH++      +++ + E+ F    +++ +    TI   NWQ  C+    AV  +V+EF
Sbjct: 22  AAAHFRYHEFATSRKFISEQSFYNPGEAIEN----TIVAHNWQRFCYFTAVAVIPVVREF 81

Query: 130 YANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMITPSEEQLKATLQSKN 189
           YANF D   +++ VRG  V ++P  IN FY +P  P   C    ++PSE  L+       
Sbjct: 82  YANFMDAEDYEVFVRGVGVGFTPERINIFYGLP--PTVECYYSGLSPSEGDLE------- 141

Query: 190 SNRSLMSAYVTPEANVW-LW 206
               ++ AY+T     W +W
Sbjct: 142 ----MIIAYLTDSTGAWKIW 144

[Close]

BLAST of Lag0041715 vs. ExPASy TrEMBL
Match: A0A7J6G6G2 (Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 62  PRKFVGEVAAAHYKE-LKNKEIMLEKGF---DENLDSLPHMLAVTIRNQNWQILCHHPEP 121
           PRKF+ + A A Y++ +++KE  +E+G    D+N  S+P  L   I+ + W+ LC  P  
Sbjct: 618 PRKFISKAAEAKYRDSVRHKEFYIERGIIVGDDNFGSMPPWLIENIKKRKWEGLCEDPAS 677

Query: 122 AVPSIVKEFYANFQDNGVW--KIVVRGQIVEWSPSTINQFYDIPDF--PFAICNAMM 171
           AV  +VKEFYANF  +  W   I+VR   V +S   IN+F+ + +    F+ CN+ +
Sbjct: 678 AVCQVVKEFYANFLAS-EWPADIIVREVKVPFSDKLINEFFQLKNITCEFSKCNSKL 733

[Close]

BLAST of Lag0041715 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-09
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 64  KFVGEVAAAHYK-ELKNKEIMLEKGF----DENLDSLPHMLAVTIRNQNWQILCHHPEPA 123
           KF  E AA  Y+  ++N+ +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 24  KFETEAAATRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 83

Query: 124 VPSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMITPSEEQL 183
           +  +V+EFYAN  D     + VRG  V WS   IN  + + D P    +  +   +++ L
Sbjct: 84  IVPLVREFYANLTDPEENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIQNITQQDL 143

Query: 184 KATLQSKNS-----NRSLMSAY------VTPEANVW 204
              L++  +     N S   AY      +TP A VW
Sbjct: 144 ITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVW 177

[Close]

BLAST of Lag0041715 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-08
Identity = 50/156 (32.05%), Postives = 70/156 (44.87%), Query Frame = 0


Query: 64  KFVGEVAAAHYK-ELKNKEIMLEKGF----DENLDSLPHMLAVTIRNQNWQILCHHPEPA 123
           KF  E A   Y+  ++N+ +  EKGF     E +  LP  +A  I   NW+  C HPE  
Sbjct: 15  KFETEAAETRYENNIQNRPLNAEKGFVLDNSETMGQLP-FIAQVITQHNWKQFCAHPEDP 74

Query: 124 VPSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFPFAICNAMMITPSEEQL 183
           +  +V+EFYAN  D     + VRG  V WS   IN  + + D P    +  +   +E  L
Sbjct: 75  IVPLVREFYANLTDPVENTVYVRGVQVSWSEEAINAVFGLGD-PVDEHSEFIENITEHDL 134

Query: 184 KATLQS-----KNSNRSLMSAY------VTPEANVW 204
              L++        N S   AY      +TP A VW
Sbjct: 135 ITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVW 168

[Close]

BLAST of Lag0041715 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-07
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 64  KFVGEVAAAHYKE-LKNKEIMLEKGF-DENLDSL--PHMLAVTIRNQNWQILCHHPEPAV 123
           KF  E A   Y+E ++N+ +  EKGF  +N   L  P  +A  I   NWQ+ C HPE  +
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 124 PSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPD 161
             +V+EFYAN  +     + VRG  V  S   IN  Y + D
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGD 115

[Close]

BLAST of Lag0041715 vs. ExPASy TrEMBL
Match: A0A2G9G807 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26059 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 49/172 (28.49%), Postives = 78/172 (45.35%), Query Frame = 0


Query: 44  APKRRQKGKAPMEAMSEVPRKFVGEVAAAHYKE-LKNKEIMLEKGFDENLDSLPHMLAVT 103
           APK ++  K   ++  +   +FV + A   Y   L  K  + E+GF+   ++    +  T
Sbjct: 2   APKNKRARKDSSDSRDK--GRFVSKSAEERYHSGLVGKVAIAERGFETKGEAYYEHIYHT 61

Query: 104 IRNQNWQILCHHPEPAVPSIVKEFYANFQDNGVWKIVVRGQIVEWSPSTINQFYDIPDFP 163
           +R + W+     PE  V  +V+EFYAN  ++   K +VRG+ V +   TIN+ Y+IP   
Sbjct: 62  VRERKWKTFIASPESGVLPLVREFYANAAEHKNLKCLVRGREVPFDSVTINELYNIPPIE 121

Query: 164 F-AICNAMMITPSEEQLKATL--------QSKNSNRSLMSAYVTPEANVWLW 206
             A  N        E+L  TL         +K    S  S  +   A +WLW
Sbjct: 122 LDAFENFCENGIDYEELTRTLCPHGAQWKMTKGEYVSFKSNCLDKAAKIWLW 171

The following BLAST results are available for this feature:

BLAST of Lag0041715 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4378427.1	6.9e-10	36.75	hypothetical protein F8388_021621 [Cannabis sativa]	[more]
PON46472.1	1.3e-08	32.05	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
PON35554.1	6.5e-08	32.05	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
PON65868.1	7.2e-07	37.62	hypothetical protein PanWU01x14_113570 [Parasponia andersonii]	[more]
WP_205755446.1	1.2e-06	30.71	hypothetical protein, partial [Bacillus amyloliquefaciens]	[more]

BLAST of Lag0041715 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6G6G2	3.3e-10	36.75	Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1	[more]
A0A2P5BCG4	6.3e-09	32.05	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5AGA5	3.1e-08	32.05	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5CXV1	3.5e-07	37.62	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE...	[more]
A0A2G9G807	1.0e-06	28.49	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26059 P...	[more]

BLAST of Lag0041715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 244..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041715.1	Lag0041715.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity