Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTGAAGACACTTGAGGTAAACATGTAACTTGTCTGATATTCTTTCATTCTTCTGAATGGAAGTTCGTGTTATGTTTGGATGTAAAAGCCACCAAATTCATCACCTCCCTGTGCATAATTTTTTTTTTTTTTTTCACGACACTATTTTCGTGGAGTGGAAAATTGATATTTTTTAGGGATTTTATATGATTCCTAAAGCTTTGCGTTTGAACCTTTATTGGATTCTGAGTAGTTTAATACTTACAGTATATACTGTGTTTTCTGTTCTTACACTAAATAATCTTGGTCATCATTGATTTTCTATTAATTTGTTATCCCAAATTTAAAGAAGAGCATTTTCAACGCATAATTTTTAGCACCTTTAAGATAAAAATGCAACTTAATGAATTTTAATATCCTAATGTAGGATGATATTAATGCGGCTTGTAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAACTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGGAAGGGAGTTGGTGGAGGTACTAAATACTGCTCTTATCACCATTATGCTTAACACAAATTTGTAGAAAATACCATGGGTAACAACATCATGTTACTCGTATATCTGATTCTAATTTGATTATATGCATGTTGAAAGCTGTCATAGTCCAACTATGGAATTCTTTATTTGTATATTGATTTTGTAGAGTTGAGATTCAGATGGACATGTTCGGTCTTTTCAATTATTATTCTTCAGTTTGCTGGAACCTCTTTGTGAAAGCAATTTACCTTTTTGAGTCTGATTAATGTACAGCTTGACTATCAAATTATGCCGTTCTTTTTCTCGTGGATCTTGATTTCAAACCACTGGATTGAAATGTGCAAGAACTTCCTTATAGAGAAAATGGATGAGGAAAAAATATTGTCAAGTTAACAAACTGGTTGTTAATTCTTTTTTCAAAAAAAAAAAAAAAAACTGGTCGTTAATTCAACCATATGATTTGGAGATTTTTGGTTTGATTGCTGATTTGAGAAACTGCCGAATGTAATCATTGGCATTGGTCTTTTCTTCTGGTATCAAAATAAGTTGGCATTGTTTTTTTTTTTTTGCTTTTTTTTTTTTATAAGAAACAAGAAGATTATATTTTGCACAAGGGCACAAAATACAGTCTAAGGGCAGGGGAAGAGAGAATCCCCTCCTGGGTAAAAAACTAGGTGAGAGCATTCCAATTTGATTGGGTCATAGAAAAGCTGTAATTACAAAAGAATTTCTTGTGCTTTGTACACCACCAAGAGGTAAAAATTTAGTATTCGAACAAAAGAGGTAAAAGGAGTATTCTTATCTTCAAAAATCCGGTGATTTCTTTCTATCCAAAGAAGGCTCTGACGACCCTACTCCACATGATCTTGGCCCTACTCTTCATCTTCCTTCCCAAAAGACCTCTACCAACCACTCCTCAATCCTGTACGGGAGGCAAGAAGTTAAGTTGAATTCCTCCATCAGCCATCTCCAACCCGTGGCAGCGAAGGGACAATGAAGGAAAAGATGATCAATAGTCTCCTTTGCCTTACAAAACAAAGGGCACACCGAGAGGAAGAGGACCCAGTTCCGACACTTCCTTTGAAGCAAGTCATGGGTATTAAGGCTTCTATGGGCTAGGGACCAAAGGAATACCTTGACTTTCTTAGGGGCACCATTTTTCCATATTGCATCAATAAGAGGGATTTTTAGGGGGGGGGGGGTCAATTCTAAGAGCTTCATGAAAGCTGATATAGTTGTATGAAGATCTTCAATCAGTTTATCGCTGACTCAAATTTAATTGATCTCCCTCTTCAGAATGGCTAGTATACTTGGTCAGATAACCGATCTCCCCCACGATGACTCTCATTGACAGATTTCTTTCTACTAATGGTCTGTTGGAAAAATTTCCCAATGCGAATGTTAATAGAACAGATCGGCCGACCTCAGACCACTTCCCTCTCATTCTATTTATGAGCAGCTATAAATGGGGCCCACACCATTTCGCTTTGAAAGCATGTGCTGGATCACCATTCATTTATGCCTATAAATGGCTTTATCATTAAGTTGAAAGCCTTAAAGAAGATGCTTAGAACTTGGAATAAAGAGGTATTTGGATGTATATCGACCAAACGGAATCAATTAATATCCGAAATATCCATTATTGATAATATGGAAGAATCTGGCCAAATATCTCTTGTTCAACATACTCACAGGAAAATTATGAAAGCTGAGCTTTTATCCTTGGCAGCCCAAGAAGAACAAAGATGGAAACAGAAGTGCAAAGAGAAATGGATCTCAGAAGGTGATATTAATTCAAGTTTCTTCCACCGTATCATGGCCGCCAAAAGGCGCAAGAACACCATTATGGAAATTCTATCGGTTCATGGCAATAGCCTTTTGAAGGAAGAGGAGATTGTATAA
mRNA sequence
ATGAAGGTGAAGACACTTGAGGATGATATTAATGCGGCTTGTAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAACTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGGAAGGGAGTTGGTGGAGAAGGCTCTGACGACCCTACTCCACATGATCTTGGCCCTACTCTTCATCTTCCTTCCCAAAAGACCTCTACCAACCACTCCTCAATCCTGAAAATTATGAAAGCTGAGCTTTTATCCTTGGCAGCCCAAGAAGAACAAAGATGGAAACAGAAGTGCAAAGAGAAATGGATCTCAGAAGGTGATATTAATTCAAGTTTCTTCCACCGTATCATGGCCGCCAAAAGGCGCAAGAACACCATTATGGAAATTCTATCGGTTCATGGCAATAGCCTTTTGAAGGAAGAGGAGATTGTATAA
Coding sequence (CDS)
ATGAAGGTGAAGACACTTGAGGATGATATTAATGCGGCTTGTAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAACTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGGAAGGGAGTTGGTGGAGAAGGCTCTGACGACCCTACTCCACATGATCTTGGCCCTACTCTTCATCTTCCTTCCCAAAAGACCTCTACCAACCACTCCTCAATCCTGAAAATTATGAAAGCTGAGCTTTTATCCTTGGCAGCCCAAGAAGAACAAAGATGGAAACAGAAGTGCAAAGAGAAATGGATCTCAGAAGGTGATATTAATTCAAGTTTCTTCCACCGTATCATGGCCGCCAAAAGGCGCAAGAACACCATTATGGAAATTCTATCGGTTCATGGCAATAGCCTTTTGAAGGAAGAGGAGATTGTATAA
Protein sequence
MKVKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPTLHLPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKWISEGDINSSFFHRIMAAKRRKNTIMEILSVHGNSLLKEEEIV
Homology
BLAST of Lag0041700 vs. NCBI nr
Match:
KAG7031433.1 (Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 94.4 bits (233), Expect = 8.8e-16
Identity = 58/106 (54.72%), Postives = 68/106 (64.15%), Query Frame = 0
Query: 1 MKVKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPT 60
M++KTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG D LG T
Sbjct: 1 MRMKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEM--GLGKT 60
Query: 61 L----HLPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKW 103
+ +L K +N S L+ A + W+++ K KW
Sbjct: 61 IQAITYLVMLKYLSNDSG------PHLIVCPASVLENWERELK-KW 97
BLAST of Lag0041700 vs. NCBI nr
Match:
XP_022157601.1 (protein CHROMATIN REMODELING 19 [Momordica charantia])
HSP 1 Score: 85.9 bits (211), Expect = 3.1e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0
Query: 7 EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 47
+DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG
Sbjct: 178 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 217
BLAST of Lag0041700 vs. NCBI nr
Match:
XP_022991239.1 (protein CHROMATIN REMODELING 19 [Cucurbita maxima])
HSP 1 Score: 84.3 bits (207), Expect = 9.1e-13
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query: 7 EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPTL----H 66
+DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG D LG T+ +
Sbjct: 177 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEM--GLGKTIQAITY 236
Query: 67 LPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKW 103
L K +N S L+ A + W+++ K KW
Sbjct: 237 LVMLKYLSNDSG------PHLIVCPASVLENWERELK-KW 267
BLAST of Lag0041700 vs. NCBI nr
Match:
XP_023545956.1 (LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 19 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 84.3 bits (207), Expect = 9.1e-13
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query: 7 EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPTL----H 66
+DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG D LG T+ +
Sbjct: 179 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEM--GLGKTIQAITY 238
Query: 67 LPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKW 103
L K +N S L+ A + W+++ K KW
Sbjct: 239 LVMLKYLSNDSG------PHLIVCPASVLENWERELK-KW 269
BLAST of Lag0041700 vs. NCBI nr
Match:
XP_004140399.1 (protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMATIN REMODELING 19-like [Cucumis sativus] >KAE8648070.1 hypothetical protein Csa_018841 [Cucumis sativus])
HSP 1 Score: 84.3 bits (207), Expect = 9.1e-13
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query: 7 EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 47
+DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLY+KGVGG
Sbjct: 173 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYQKGVGG 212
BLAST of Lag0041700 vs. ExPASy Swiss-Prot
Match:
Q9ZUL5 (Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query: 7 EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 47
++DI+ ACKAEDSDF+P+LKPYQLVGVNFLLLLY+KG+ G
Sbjct: 195 QNDIDDACKAEDSDFQPILKPYQLVGVNFLLLLYKKGIEG 234
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7031433.1 | 8.8e-16 | 54.72 | Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_022157601.1 | 3.1e-13 | 97.50 | protein CHROMATIN REMODELING 19 [Momordica charantia] | [more] |
XP_022991239.1 | 9.1e-13 | 53.00 | protein CHROMATIN REMODELING 19 [Cucurbita maxima] | [more] |
XP_023545956.1 | 9.1e-13 | 53.00 | LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 19 [Cucurbita pepo subsp. pepo... | [more] |
XP_004140399.1 | 9.1e-13 | 95.00 | protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMA... | [more] |
Match Name | E-value | Identity | Description | |
Q9ZUL5 | 2.1e-12 | 77.50 | Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=... | [more] |