Lag0041700 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041700
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein CHROMATIN REMODELING 19
Location	chr13: 24290923 .. 24293355 (+)
RNA-Seq Expression	Lag0041700
Synteny	Lag0041700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGAAGACACTTGAGGTAAACATGTAACTTGTCTGATATTCTTTCATTCTTCTGAATGGAAGTTCGTGTTATGTTTGGATGTAAAAGCCACCAAATTCATCACCTCCCTGTGCATAATTTTTTTTTTTTTTTTCACGACACTATTTTCGTGGAGTGGAAAATTGATATTTTTTAGGGATTTTATATGATTCCTAAAGCTTTGCGTTTGAACCTTTATTGGATTCTGAGTAGTTTAATACTTACAGTATATACTGTGTTTTCTGTTCTTACACTAAATAATCTTGGTCATCATTGATTTTCTATTAATTTGTTATCCCAAATTTAAAGAAGAGCATTTTCAACGCATAATTTTTAGCACCTTTAAGATAAAAATGCAACTTAATGAATTTTAATATCCTAATGTAGGATGATATTAATGCGGCTTGTAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAACTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGGAAGGGAGTTGGTGGAGGTACTAAATACTGCTCTTATCACCATTATGCTTAACACAAATTTGTAGAAAATACCATGGGTAACAACATCATGTTACTCGTATATCTGATTCTAATTTGATTATATGCATGTTGAAAGCTGTCATAGTCCAACTATGGAATTCTTTATTTGTATATTGATTTTGTAGAGTTGAGATTCAGATGGACATGTTCGGTCTTTTCAATTATTATTCTTCAGTTTGCTGGAACCTCTTTGTGAAAGCAATTTACCTTTTTGAGTCTGATTAATGTACAGCTTGACTATCAAATTATGCCGTTCTTTTTCTCGTGGATCTTGATTTCAAACCACTGGATTGAAATGTGCAAGAACTTCCTTATAGAGAAAATGGATGAGGAAAAAATATTGTCAAGTTAACAAACTGGTTGTTAATTCTTTTTTCAAAAAAAAAAAAAAAAACTGGTCGTTAATTCAACCATATGATTTGGAGATTTTTGGTTTGATTGCTGATTTGAGAAACTGCCGAATGTAATCATTGGCATTGGTCTTTTCTTCTGGTATCAAAATAAGTTGGCATTGTTTTTTTTTTTTTGCTTTTTTTTTTTTATAAGAAACAAGAAGATTATATTTTGCACAAGGGCACAAAATACAGTCTAAGGGCAGGGGAAGAGAGAATCCCCTCCTGGGTAAAAAACTAGGTGAGAGCATTCCAATTTGATTGGGTCATAGAAAAGCTGTAATTACAAAAGAATTTCTTGTGCTTTGTACACCACCAAGAGGTAAAAATTTAGTATTCGAACAAAAGAGGTAAAAGGAGTATTCTTATCTTCAAAAATCCGGTGATTTCTTTCTATCCAAAGAAGGCTCTGACGACCCTACTCCACATGATCTTGGCCCTACTCTTCATCTTCCTTCCCAAAAGACCTCTACCAACCACTCCTCAATCCTGTACGGGAGGCAAGAAGTTAAGTTGAATTCCTCCATCAGCCATCTCCAACCCGTGGCAGCGAAGGGACAATGAAGGAAAAGATGATCAATAGTCTCCTTTGCCTTACAAAACAAAGGGCACACCGAGAGGAAGAGGACCCAGTTCCGACACTTCCTTTGAAGCAAGTCATGGGTATTAAGGCTTCTATGGGCTAGGGACCAAAGGAATACCTTGACTTTCTTAGGGGCACCATTTTTCCATATTGCATCAATAAGAGGGATTTTTAGGGGGGGGGGGGTCAATTCTAAGAGCTTCATGAAAGCTGATATAGTTGTATGAAGATCTTCAATCAGTTTATCGCTGACTCAAATTTAATTGATCTCCCTCTTCAGAATGGCTAGTATACTTGGTCAGATAACCGATCTCCCCCACGATGACTCTCATTGACAGATTTCTTTCTACTAATGGTCTGTTGGAAAAATTTCCCAATGCGAATGTTAATAGAACAGATCGGCCGACCTCAGACCACTTCCCTCTCATTCTATTTATGAGCAGCTATAAATGGGGCCCACACCATTTCGCTTTGAAAGCATGTGCTGGATCACCATTCATTTATGCCTATAAATGGCTTTATCATTAAGTTGAAAGCCTTAAAGAAGATGCTTAGAACTTGGAATAAAGAGGTATTTGGATGTATATCGACCAAACGGAATCAATTAATATCCGAAATATCCATTATTGATAATATGGAAGAATCTGGCCAAATATCTCTTGTTCAACATACTCACAGGAAAATTATGAAAGCTGAGCTTTTATCCTTGGCAGCCCAAGAAGAACAAAGATGGAAACAGAAGTGCAAAGAGAAATGGATCTCAGAAGGTGATATTAATTCAAGTTTCTTCCACCGTATCATGGCCGCCAAAAGGCGCAAGAACACCATTATGGAAATTCTATCGGTTCATGGCAATAGCCTTTTGAAGGAAGAGGAGATTGTATAA

mRNA sequence

ATGAAGGTGAAGACACTTGAGGATGATATTAATGCGGCTTGTAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAACTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGGAAGGGAGTTGGTGGAGAAGGCTCTGACGACCCTACTCCACATGATCTTGGCCCTACTCTTCATCTTCCTTCCCAAAAGACCTCTACCAACCACTCCTCAATCCTGAAAATTATGAAAGCTGAGCTTTTATCCTTGGCAGCCCAAGAAGAACAAAGATGGAAACAGAAGTGCAAAGAGAAATGGATCTCAGAAGGTGATATTAATTCAAGTTTCTTCCACCGTATCATGGCCGCCAAAAGGCGCAAGAACACCATTATGGAAATTCTATCGGTTCATGGCAATAGCCTTTTGAAGGAAGAGGAGATTGTATAA

Coding sequence (CDS)

ATGAAGGTGAAGACACTTGAGGATGATATTAATGCGGCTTGTAAGGCTGAAGATTCTGATTTTGAGCCTGTTCTCAAGCCATATCAACTGGTTGGCGTGAACTTTCTTCTTCTTTTGTATCGGAAGGGAGTTGGTGGAGAAGGCTCTGACGACCCTACTCCACATGATCTTGGCCCTACTCTTCATCTTCCTTCCCAAAAGACCTCTACCAACCACTCCTCAATCCTGAAAATTATGAAAGCTGAGCTTTTATCCTTGGCAGCCCAAGAAGAACAAAGATGGAAACAGAAGTGCAAAGAGAAATGGATCTCAGAAGGTGATATTAATTCAAGTTTCTTCCACCGTATCATGGCCGCCAAAAGGCGCAAGAACACCATTATGGAAATTCTATCGGTTCATGGCAATAGCCTTTTGAAGGAAGAGGAGATTGTATAA

Protein sequence

MKVKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPTLHLPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKWISEGDINSSFFHRIMAAKRRKNTIMEILSVHGNSLLKEEEIV

Homology

[Close]

BLAST of Lag0041700 vs. NCBI nr
Match: KAG7031433.1 (Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-16
Identity = 58/106 (54.72%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MKVKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPT 60
           M++KTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG    D     LG T
Sbjct: 1   MRMKTLEDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEM--GLGKT 60

Query: 61  L----HLPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKW 103
           +    +L   K  +N S         L+   A   + W+++ K KW
Sbjct: 61  IQAITYLVMLKYLSNDSG------PHLIVCPASVLENWERELK-KW 97

[Close]

BLAST of Lag0041700 vs. NCBI nr
Match: XP_022157601.1 (protein CHROMATIN REMODELING 19 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-13
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 7   EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 47
           +DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG
Sbjct: 178 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 217

[Close]

BLAST of Lag0041700 vs. NCBI nr
Match: XP_022991239.1 (protein CHROMATIN REMODELING 19 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-13
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 7   EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPTL----H 66
           +DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG    D     LG T+    +
Sbjct: 177 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEM--GLGKTIQAITY 236

Query: 67  LPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKW 103
           L   K  +N S         L+   A   + W+++ K KW
Sbjct: 237 LVMLKYLSNDSG------PHLIVCPASVLENWERELK-KW 267

[Close]

BLAST of Lag0041700 vs. NCBI nr
Match: XP_023545956.1 (LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 19 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-13
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 7   EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGEGSDDPTPHDLGPTL----H 66
           +DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG    D     LG T+    +
Sbjct: 179 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGGAILADEM--GLGKTIQAITY 238

Query: 67  LPSQKTSTNHSSILKIMKAELLSLAAQEEQRWKQKCKEKW 103
           L   K  +N S         L+   A   + W+++ K KW
Sbjct: 239 LVMLKYLSNDSG------PHLIVCPASVLENWERELK-KW 269

[Close]

BLAST of Lag0041700 vs. NCBI nr
Match: XP_004140399.1 (protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMATIN REMODELING 19-like [Cucumis sativus] >KAE8648070.1 hypothetical protein Csa_018841 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-13
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 7   EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 47
           +DDINAACKAEDSDFEPVLKPYQLVGVNFLLLLY+KGVGG
Sbjct: 173 QDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYQKGVGG 212

[Close]

BLAST of Lag0041700 vs. ExPASy Swiss-Prot
Match: Q9ZUL5 (Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 7   EDDINAACKAEDSDFEPVLKPYQLVGVNFLLLLYRKGVGG 47
           ++DI+ ACKAEDSDF+P+LKPYQLVGVNFLLLLY+KG+ G
Sbjct: 195 QNDIDDACKAEDSDFQPILKPYQLVGVNFLLLLYKKGIEG 234

The following BLAST results are available for this feature:

BLAST of Lag0041700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031433.1	8.8e-16	54.72	Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022157601.1	3.1e-13	97.50	protein CHROMATIN REMODELING 19 [Momordica charantia]	[more]
XP_022991239.1	9.1e-13	53.00	protein CHROMATIN REMODELING 19 [Cucurbita maxima]	[more]
XP_023545956.1	9.1e-13	53.00	LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 19 [Cucurbita pepo subsp. pepo...	[more]
XP_004140399.1	9.1e-13	95.00	protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMA...	[more]

BLAST of Lag0041700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUL5	2.1e-12	77.50	Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041700.1	Lag0041700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding