Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTGCGCATCAGAGGCCGAGCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCCGAACTATCTTTGGAGGACCAGCTAGAGGAGGTTCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTATCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTAGTGTTCACTCTTATTGTAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAACTCAGCTGATGTCCTTTCTCTAA mRNA sequence
ATGCAAATTGCGCATCAGAGGCCGAGCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCCGAACTATCTTTGGAGGACCAGCTAGAGGAGGTTCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTATCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTAGTGTTCACTCTTATTGTAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAACTCAGCTGATGTCCTTTCTCTAA Coding sequence (CDS)
ATGCAAATTGCGCATCAGAGGCCGAGCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCCGAACTATCTTTGGAGGACCAGCTAGAGGAGGTTCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTATCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTAGTGTTCACTCTTATTGTAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAACTCAGCTGATGTCCTTTCTCTAA Protein sequence
MQIAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKAHPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGTQLMSFL
Homology
BLAST of Lag0041685 vs. NCBI nr
Match:
XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])
HSP 1 Score: 94.7 bits (234), Expect = 5.2e-16
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 0
Query: 3 IAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKA 62 + + +++G ++ P REIRTI GGP S+RKRKA REAR E +Y + Sbjct: 255 VEEPKATQNGESEKSPAREIRTIMGGPIERESARKRKADVREARPSREQNEVYHAYTTNR 314 Query: 63 HPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGT 105 ++EF+E EA + PHNDALV TL + NVK+HRIL+DGG+ Sbjct: 315 SVTIEFSEDEATHLLHPHNDALVITLKIANVKVHRILVDGGS 356
BLAST of Lag0041685 vs. NCBI nr
Match:
XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])
HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0
Query: 3 IAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKA 62 + + +++G + P REIRTI GGP S RKRK REAR E +Y ++ Sbjct: 296 VEEPKATQNGESDKSPAREIRTIMGGPIERESGRKRKPDVREARASREQNEVYHVYTTNR 355 Query: 63 HPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGT 105 ++EF+E EA + PHNDALV TL + NV++HRIL+DGG+ Sbjct: 356 PVTIEFSEDEATHLLHPHNDALVITLKIANVRVHRILVDGGS 397
BLAST of Lag0041685 vs. NCBI nr
Match:
XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])
HSP 1 Score: 91.3 bits (225), Expect = 5.7e-15
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 0
Query: 3 IAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKA 62 + + +++G + P REIRTI GGP S RKRKA REAR E +Y + Sbjct: 471 VEEPKATQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTSREQNEVYHAYTTNR 530 Query: 63 HPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGT 105 ++EF+E EA + PHNDALV L + NVK+HR+L+DGG+ Sbjct: 531 PVTIEFSEDEATHLLHPHNDALVIXLKIANVKVHRVLVDGGS 572
BLAST of Lag0041685 vs. NCBI nr
Match:
XP_022148331.1 (uncharacterized protein LOC111017012 [Momordica charantia])
HSP 1 Score: 89.0 bits (219), Expect = 2.8e-14
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0
Query: 16 EEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKAHPSLEFTEAEAAS 75 ++P REIRTI GP G SSRKRK AR+AR +Y P+L F EA Sbjct: 81 QDPTREIRTISSGPVGGESSRKRKIQARQARVRLYDHTIYTATTNHKTPTLCFNALEAQV 140 Query: 76 IHQPHNDALVFTLIVVNVKIHRILIDGGT 105 +HQPHNDALV TL++ N+++HRIL+DGG+ Sbjct: 141 LHQPHNDALVITLVIANIRVHRILVDGGS 169
BLAST of Lag0041685 vs. NCBI nr
Match:
XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])
HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 0
Query: 9 SKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKAHPSLEF 68 +++G + + P REI+TI GGP S RK K REAR + +Y+ ++A ++EF Sbjct: 53 TQNGENDKSPAREIQTIMGGPIESESGRKIKVDVREARTNLGHNEVYYTYIADRSATIEF 112 Query: 69 TEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGG 104 ++ EA + PHNDALV TL + NVK+HRIL+DGG Sbjct: 113 SKDEATHLLHPHNDALVITLKIANVKVHRILVDGG 147
The following BLAST results are available for this feature:
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G C A A A T T G C G C A T C A G A G G C C G A G C A A A G A T G G C C G A G A C A A A G A A G A A C C C C T A C G A G A G A T C C G A A C T A T C T T T G G A G G A C C A G C T A G A G G A G G T T C A A G C A G G A A G A G G A A A G C T A T T G C C A G G G A A G C A A G G T T C G A A C C A G A A T A T C G A G G T A T G T A C T T T A T C C A T C T A G C A A A G G C A C A C C C C T C T T T G G A G T T C A C T G A G G C T G A G G C A G C A A G C A T T C A T C A G C C A C A T A A T G A T G C C C T A G T G T T C A C T C T T A T T G T A G T C A A T G T G A A A A T C C A T C G G A T C C T A A T T G A T G G A G G A A C T C A G C T G A T G T C C T T T C T C T A A 50 100 150 200 250 300 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 7..22
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..39
Relationships
The following mRNA feature(s) are a part of this gene: