Lag0041685 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041685
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 23928523 .. 23928855 (-)
RNA-Seq ExpressionLag0041685
SyntenyLag0041685
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATTGCGCATCAGAGGCCGAGCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCCGAACTATCTTTGGAGGACCAGCTAGAGGAGGTTCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTATCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTAGTGTTCACTCTTATTGTAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAACTCAGCTGATGTCCTTTCTCTAA

mRNA sequence

ATGCAAATTGCGCATCAGAGGCCGAGCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCCGAACTATCTTTGGAGGACCAGCTAGAGGAGGTTCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTATCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTAGTGTTCACTCTTATTGTAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAACTCAGCTGATGTCCTTTCTCTAA

Coding sequence (CDS)

ATGCAAATTGCGCATCAGAGGCCGAGCAAAGATGGCCGAGACAAAGAAGAACCCCTACGAGAGATCCGAACTATCTTTGGAGGACCAGCTAGAGGAGGTTCAAGCAGGAAGAGGAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATATCGAGGTATGTACTTTATCCATCTAGCAAAGGCACACCCCTCTTTGGAGTTCACTGAGGCTGAGGCAGCAAGCATTCATCAGCCACATAATGATGCCCTAGTGTTCACTCTTATTGTAGTCAATGTGAAAATCCATCGGATCCTAATTGATGGAGGAACTCAGCTGATGTCCTTTCTCTAA

Protein sequence

MQIAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKAHPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGTQLMSFL
Homology
BLAST of Lag0041685 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-16
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 0

Query: 3   IAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKA 62
           +   + +++G  ++ P REIRTI GGP    S+RKRKA  REAR   E   +Y  +    
Sbjct: 255 VEEPKATQNGESEKSPAREIRTIMGGPIERESARKRKADVREARPSREQNEVYHAYTTNR 314

Query: 63  HPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGT 105
             ++EF+E EA  +  PHNDALV TL + NVK+HRIL+DGG+
Sbjct: 315 SVTIEFSEDEATHLLHPHNDALVITLKIANVKVHRILVDGGS 356

BLAST of Lag0041685 vs. NCBI nr
Match: XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0

Query: 3   IAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKA 62
           +   + +++G   + P REIRTI GGP    S RKRK   REAR   E   +Y ++    
Sbjct: 296 VEEPKATQNGESDKSPAREIRTIMGGPIERESGRKRKPDVREARASREQNEVYHVYTTNR 355

Query: 63  HPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGT 105
             ++EF+E EA  +  PHNDALV TL + NV++HRIL+DGG+
Sbjct: 356 PVTIEFSEDEATHLLHPHNDALVITLKIANVRVHRILVDGGS 397

BLAST of Lag0041685 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-15
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 0

Query: 3   IAHQRPSKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKA 62
           +   + +++G   + P REIRTI GGP    S RKRKA  REAR   E   +Y  +    
Sbjct: 471 VEEPKATQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTSREQNEVYHAYTTNR 530

Query: 63  HPSLEFTEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGGT 105
             ++EF+E EA  +  PHNDALV  L + NVK+HR+L+DGG+
Sbjct: 531 PVTIEFSEDEATHLLHPHNDALVIXLKIANVKVHRVLVDGGS 572

BLAST of Lag0041685 vs. NCBI nr
Match: XP_022148331.1 (uncharacterized protein LOC111017012 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-14
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0

Query: 16  EEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKAHPSLEFTEAEAAS 75
           ++P REIRTI  GP  G SSRKRK  AR+AR       +Y        P+L F   EA  
Sbjct: 81  QDPTREIRTISSGPVGGESSRKRKIQARQARVRLYDHTIYTATTNHKTPTLCFNALEAQV 140

Query: 76  IHQPHNDALVFTLIVVNVKIHRILIDGGT 105
           +HQPHNDALV TL++ N+++HRIL+DGG+
Sbjct: 141 LHQPHNDALVITLVIANIRVHRILVDGGS 169

BLAST of Lag0041685 vs. NCBI nr
Match: XP_022155902.1 (uncharacterized protein LOC111022905 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 0

Query: 9   SKDGRDKEEPLREIRTIFGGPARGGSSRKRKAIAREARFEPEYRGMYFIHLAKAHPSLEF 68
           +++G + + P REI+TI GGP    S RK K   REAR    +  +Y+ ++A    ++EF
Sbjct: 53  TQNGENDKSPAREIQTIMGGPIESESGRKIKVDVREARTNLGHNEVYYTYIADRSATIEF 112

Query: 69  TEAEAASIHQPHNDALVFTLIVVNVKIHRILIDGG 104
           ++ EA  +  PHNDALV TL + NVK+HRIL+DGG
Sbjct: 113 SKDEATHLLHPHNDALVITLKIANVKVHRILVDGG 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159368.15.2e-1646.08uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022142767.12.6e-1544.12uncharacterized protein LOC111012805 [Momordica charantia][more]
XP_022158830.15.7e-1544.12uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022148331.12.8e-1450.56uncharacterized protein LOC111017012 [Momordica charantia][more]
XP_022155902.13.7e-1445.26uncharacterized protein LOC111022905 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041685.1Lag0041685.1mRNA