Lag0041616 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAATAGGAAGTTTTCTGTTCTCATAAATACATAAGGTTCCTTGAAGGTGAAGCCAAATCTAATTTCTTGACCAATCCTACAAGTCAAGGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAGGTTCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTCCTTCCCCCAAGTTAGAAGGTTCTCACGTCGCTTCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTAAAGGTTCTCCCATCGCTTCACTACGATCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCATTCCCCCAAGTTCGAAGGTTCTCACGCTCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGATTCTCACGCGCTTCGCTTTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCACTGCTCCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCGTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCGTTCCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTATTGCTCCTTCTCCAAGTTCGAAAGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTTCTTTTCAAATGTTTGGCGGCGGTTTACGTCCTCGTTTCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTTCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTTCTCCCATCGCTTCACTACGATCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCATTCCCCCAAGTTCGAAGGTTCTCACGCTCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGATTCTCACGCGCTTCGCTTTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCACTGCTCCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCAAAGTTCGTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCGTTCCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTATTGCTCCTTCTCCAAGTTCGAAAGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTTCTTTTCAAATGTTTGGCGGCGGTTTACGTCCTCGTTTCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTTCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTTCTCCCATCGCTTCACTACGATCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCATTCCCCCAAGTTCGAAGGTTCTCACGCTCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGATTCTCACGCGCTTCGCTTTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCACTGCTCCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCAAAGTTCGTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCGTTCCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTATTGCTCCTTCTCCAAGTTCGAAAGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTTCTTTTCAAATGTTTGGCGGCGGTTTACGTCCTCGTTTCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLSKFEGPYTVRYCVVPSPSSKVLRCILLRCSFSKFEGSQLYDCYVVPPPSAKDLMWFSHRFTTILPPSLKVLTSLRCDPSSKFEGSHALRSAIHSPKFEGSHALRAVPSPKFEDSHALRFAIPSPKFEGSHALRCTVPSSKFEGSHALRCYLPPSSKVLSRAAAAPSSKFEGSLTRFARSFSKFEGASLHCSSKFEGASLRCYLPPSSKVLSRAAAVPSSKFKVRSSKFKGSHALRCSSFPPSSKVPSRASLAPSPSSKALLSTAPSPSSKALLSIAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVYVLVSLHLQMLVVDGVRCASSSNVGS Homology
BLAST of Lag0041616 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 94.7 bits (234), Expect = 2.0e-15 Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of Lag0041616 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 93.6 bits (231), Expect = 4.5e-15 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Lag0041616 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 92.8 bits (229), Expect = 7.6e-15 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Lag0041616 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 92.8 bits (229), Expect = 7.6e-15 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Lag0041616 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 92.4 bits (228), Expect = 9.9e-15 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 0
BLAST of Lag0041616 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 9.7e-16 Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of Lag0041616 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 2.2e-15 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Lag0041616 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 3.7e-15 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Lag0041616 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 3.7e-15 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Lag0041616 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 4.8e-15 Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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