Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAGCGCTTTCCCGTGGAATCCAAAGGAAGACGCAAGAAGTTGCAAGAGGTATTTACATTCATTGATAAGGATGCTATCGACATTTGTTTAGAAGTTTTGAGTTTTATAATCTTCTGTAGTTTCTTTTTCTCAAATCTCATTTTTACTTGTTTTGGGTGGGACAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTCGTCAGATGCATCATGGTGAGTCTACTTCTGCCCAATGTTATTATGCAGTACTAATAGGATTGACTGCATATTTAACCAAATGCTGAACGGAACCTTTCCCTTTTCTTCTTACTGTTTAATATCATTATGTTATAACCATATTGTTCCAAGTACATGTATAGGATTGCATTAGATAGTTTTCCTTTTAGATTTAGTATGTTCTCATCTTTAAAATCGGTTTCTAGAAGAAAGATCTCATCTCAAAGTAGGTTCAAAATTTTGAGATACTTATATTTGGACAAATTTAAGATGTTTGGAAATTGTGACTTGTAATGGAGGTTCTAATAATTGTAATTAGCTTTTGTTACCTGAATGTGCATGTGGGTGAGTTTGCATAGAAAGATATTTTAATAAATAAAATATGAAGACAATCAACTTAGAAAGTTAGTTGTATGGACCGTTAATATTTTTTTTGACAATATGAAAAATGGGGGATTTGAACCACAGACCTCTTGGTCATTAGTGCAAGCTTTACATCAGTTGAGCTATGCTCATTTTGACATGGACAGTTAGCAATATGTTGTACTGTGCCAGGGCCGGGTATTTATAGAGTTCAATATATAGGGGTGGGGGATTTGAATCTCACACCTTTTGGTCGATGGTACATGCTTTAACCAGTTGGGCTATGCTCAGTTGGCTAGGGCCAAGTGTTTATAATGTATTTCAAACCCATTTTCATTTCGGTCTTTAACCAATTACCATGCAAAGCATGATGCCTTTCTCAAGGATTGAGGATAATTTATTGAAGTTACATAAAGGCTTTTATTGTAGCCATATTAGTTTATGATCTTAAAATCCACTAGTTGCTTTCTGCATATACTGTACTGTGAAAATAAACAGCATATTGTTTTGCCTATCAATTGCTTTATTGTTTTGCCTATCAATTGCTTTAGATTCCTACTCTATATTCATTTTAATCTTGGTTTATTTTCTTGTGTTGTAGATGTGCTTTAATGCTTTTAATCAAGCTGCAGACCTCGACGTTTTGGATCATCCAGTTCTAAATTTTATATACTACCTGGTAAATATGGGATTGTGGAATTTTAATGCACATTTTGTGGCCATGATATTTCACTTGTGGTTATTTGTTTTACTGGAATCTTTTTAGTGACTTGGGGTACTCTAATCAATACGATGAATTTCCTGCATTTAGTGCAAGTATCAGTACTCTACGATGAAGGATTTACTTTTAGTGTTGGTATTATGGTTTTGCTCCTTGGGACTTGACTGTTAATTCTGTTGAGCTAAATTGGTGTTGTATACCTTTTCATTTAAGGTCAAGCCTACCCTTAAAAAGGTTTAATGTTCCGTTTGATGATGTGGGGTTATTCTTTGTATACATTATGTTGTTCCTTTGTATTTTCTACTTCCTTTTGTTCTGAAAAATGTGCAAAACATCATTGTCAGCGCCACAATAATTTACTTGTTTTTCCATCTCTGCAGTTGGTTGAGATCTTACCTTCTTCCCTGGTTCTCTTCATTCTGAGGAAGCTGCCTCCGAAACGAGGAATCACGCAGTACCATCCTATCCGCTGA
mRNA sequence
ATGTTACAGCGCTTTCCCGTGGAATCCAAAGGAAGACGCAAGAAGTTGCAAGAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTCGTCAGATGCATCATGATGTGCTTTAATGCTTTTAATCAAGCTGCAGACCTCGACGTTTTGGATCATCCAGTTCTAAATTTTATATACTACCTGTTGGTTGAGATCTTACCTTCTTCCCTGGTTCTCTTCATTCTGAGGAAGCTGCCTCCGAAACGAGGAATCACGCAGTACCATCCTATCCGCTGA
Coding sequence (CDS)
ATGTTACAGCGCTTTCCCGTGGAATCCAAAGGAAGACGCAAGAAGTTGCAAGAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTCGTCAGATGCATCATGATGTGCTTTAATGCTTTTAATCAAGCTGCAGACCTCGACGTTTTGGATCATCCAGTTCTAAATTTTATATACTACCTGTTGGTTGAGATCTTACCTTCTTCCCTGGTTCTCTTCATTCTGAGGAAGCTGCCTCCGAAACGAGGAATCACGCAGTACCATCCTATCCGCTGA
Protein sequence
MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Homology
BLAST of Lag0041605 vs. NCBI nr
Match:
KAG6599855.1 (Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030530.1 Tobamovirus multiplication protein 3 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIY 260
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 292
BLAST of Lag0041605 vs. NCBI nr
Match:
XP_023539850.1 (tobamovirus multiplication protein 3-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIY 260
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 292
BLAST of Lag0041605 vs. NCBI nr
Match:
XP_022977192.1 (protein TOM THREE HOMOLOG 1-like isoform X1 [Cucurbita maxima])
HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIY 260
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 292
BLAST of Lag0041605 vs. NCBI nr
Match:
KAG6600798.1 (Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICFSCFL+RCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDQAADLDVLDHPVLNFIY 260
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
Y+LVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YMLVEILPSSLVLFILRKLPPKRGITQYHPIR 292
BLAST of Lag0041605 vs. NCBI nr
Match:
XP_022942344.1 (protein TOM THREE HOMOLOG 1 [Cucurbita moschata])
HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICFSCFL+RCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDQAADLDVLDHPVLNFIY 260
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
Y+LVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YMLVEILPSSLVLFILRKLPPKRGITQYHPIR 292
BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match:
Q402F3 (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICFSCFL+RC+MMCFNAFN+AADLDVLDHP+LN IY
Sbjct: 203 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFNKAADLDVLDHPILNLIY 262
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 263 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 294
BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match:
Q948R8 (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.9e-43
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF+AF+ AADLDVLDHP+LNFIY
Sbjct: 202 MLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIY 261
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
YLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 262 YLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293
BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match:
Q9ZUM2 (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2)
HSP 1 Score: 173.7 bits (439), Expect = 9.6e-43
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
MLQRFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF AF++ A+LDVLDHP+LNFIY
Sbjct: 212 MLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIY 271
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
YLLVEILPSSLVLFILRKLPPKRGITQYH IR
Sbjct: 272 YLLVEILPSSLVLFILRKLPPKRGITQYHQIR 303
BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match:
Q9FEG2 (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1)
HSP 1 Score: 140.6 bits (353), Expect = 9.0e-33
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
ML+RFP+ESKGRRKKL EVG VT ICF+CFL+RC+++ +AF++ LDVLDHPVLN IY
Sbjct: 200 MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIY 259
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
Y++VE+LPS+LVLFILRKLPPKR QYHPI+
Sbjct: 260 YMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ 291
BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match:
Q402F4 (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 2.0e-32
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0
Query: 1 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
ML+RFP+ESKGRRKKL EVG VT ICF+CFL+ C ++ +AF+ A LDVLDHPVLN IY
Sbjct: 197 MLRRFPIESKGRRKKLHEVGSVTAICFTCFLISCFVVVLSAFDPDASLDVLDHPVLNLIY 256
Query: 61 YLLVEILPSSLVLFILRKLPPKRGITQYHPI 92
YLLVEILPS+LVL+ILRKLPPKR QYHPI
Sbjct: 257 YLLVEILPSALVLYILRKLPPKRVSAQYHPI 287
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6599855.1 | 1.1e-43 | 98.91 | Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sor... | [more] |
XP_023539850.1 | 1.1e-43 | 98.91 | tobamovirus multiplication protein 3-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022977192.1 | 1.1e-43 | 98.91 | protein TOM THREE HOMOLOG 1-like isoform X1 [Cucurbita maxima] | [more] |
KAG6600798.1 | 2.4e-43 | 96.74 | Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sor... | [more] |
XP_022942344.1 | 2.4e-43 | 96.74 | protein TOM THREE HOMOLOG 1 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Q402F3 | 1.2e-45 | 94.57 | Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 S... | [more] |
Q948R8 | 1.9e-43 | 91.30 | Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1 | [more] |
Q9ZUM2 | 9.6e-43 | 90.22 | Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=... | [more] |
Q9FEG2 | 9.0e-33 | 70.65 | Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=... | [more] |
Q402F4 | 2.0e-32 | 73.63 | Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 S... | [more] |