Lag0041605 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041605
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTobamovirus multiplication 1 homolog
Locationchr13: 21668164 .. 21669947 (-)
RNA-Seq ExpressionLag0041605
SyntenyLag0041605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAGCGCTTTCCCGTGGAATCCAAAGGAAGACGCAAGAAGTTGCAAGAGGTATTTACATTCATTGATAAGGATGCTATCGACATTTGTTTAGAAGTTTTGAGTTTTATAATCTTCTGTAGTTTCTTTTTCTCAAATCTCATTTTTACTTGTTTTGGGTGGGACAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTCGTCAGATGCATCATGGTGAGTCTACTTCTGCCCAATGTTATTATGCAGTACTAATAGGATTGACTGCATATTTAACCAAATGCTGAACGGAACCTTTCCCTTTTCTTCTTACTGTTTAATATCATTATGTTATAACCATATTGTTCCAAGTACATGTATAGGATTGCATTAGATAGTTTTCCTTTTAGATTTAGTATGTTCTCATCTTTAAAATCGGTTTCTAGAAGAAAGATCTCATCTCAAAGTAGGTTCAAAATTTTGAGATACTTATATTTGGACAAATTTAAGATGTTTGGAAATTGTGACTTGTAATGGAGGTTCTAATAATTGTAATTAGCTTTTGTTACCTGAATGTGCATGTGGGTGAGTTTGCATAGAAAGATATTTTAATAAATAAAATATGAAGACAATCAACTTAGAAAGTTAGTTGTATGGACCGTTAATATTTTTTTTGACAATATGAAAAATGGGGGATTTGAACCACAGACCTCTTGGTCATTAGTGCAAGCTTTACATCAGTTGAGCTATGCTCATTTTGACATGGACAGTTAGCAATATGTTGTACTGTGCCAGGGCCGGGTATTTATAGAGTTCAATATATAGGGGTGGGGGATTTGAATCTCACACCTTTTGGTCGATGGTACATGCTTTAACCAGTTGGGCTATGCTCAGTTGGCTAGGGCCAAGTGTTTATAATGTATTTCAAACCCATTTTCATTTCGGTCTTTAACCAATTACCATGCAAAGCATGATGCCTTTCTCAAGGATTGAGGATAATTTATTGAAGTTACATAAAGGCTTTTATTGTAGCCATATTAGTTTATGATCTTAAAATCCACTAGTTGCTTTCTGCATATACTGTACTGTGAAAATAAACAGCATATTGTTTTGCCTATCAATTGCTTTATTGTTTTGCCTATCAATTGCTTTAGATTCCTACTCTATATTCATTTTAATCTTGGTTTATTTTCTTGTGTTGTAGATGTGCTTTAATGCTTTTAATCAAGCTGCAGACCTCGACGTTTTGGATCATCCAGTTCTAAATTTTATATACTACCTGGTAAATATGGGATTGTGGAATTTTAATGCACATTTTGTGGCCATGATATTTCACTTGTGGTTATTTGTTTTACTGGAATCTTTTTAGTGACTTGGGGTACTCTAATCAATACGATGAATTTCCTGCATTTAGTGCAAGTATCAGTACTCTACGATGAAGGATTTACTTTTAGTGTTGGTATTATGGTTTTGCTCCTTGGGACTTGACTGTTAATTCTGTTGAGCTAAATTGGTGTTGTATACCTTTTCATTTAAGGTCAAGCCTACCCTTAAAAAGGTTTAATGTTCCGTTTGATGATGTGGGGTTATTCTTTGTATACATTATGTTGTTCCTTTGTATTTTCTACTTCCTTTTGTTCTGAAAAATGTGCAAAACATCATTGTCAGCGCCACAATAATTTACTTGTTTTTCCATCTCTGCAGTTGGTTGAGATCTTACCTTCTTCCCTGGTTCTCTTCATTCTGAGGAAGCTGCCTCCGAAACGAGGAATCACGCAGTACCATCCTATCCGCTGA

mRNA sequence

ATGTTACAGCGCTTTCCCGTGGAATCCAAAGGAAGACGCAAGAAGTTGCAAGAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTCGTCAGATGCATCATGATGTGCTTTAATGCTTTTAATCAAGCTGCAGACCTCGACGTTTTGGATCATCCAGTTCTAAATTTTATATACTACCTGTTGGTTGAGATCTTACCTTCTTCCCTGGTTCTCTTCATTCTGAGGAAGCTGCCTCCGAAACGAGGAATCACGCAGTACCATCCTATCCGCTGA

Coding sequence (CDS)

ATGTTACAGCGCTTTCCCGTGGAATCCAAAGGAAGACGCAAGAAGTTGCAAGAGGTTGGCTATGTGACAACTATATGTTTTTCATGTTTCCTCGTCAGATGCATCATGATGTGCTTTAATGCTTTTAATCAAGCTGCAGACCTCGACGTTTTGGATCATCCAGTTCTAAATTTTATATACTACCTGTTGGTTGAGATCTTACCTTCTTCCCTGGTTCTCTTCATTCTGAGGAAGCTGCCTCCGAAACGAGGAATCACGCAGTACCATCCTATCCGCTGA

Protein sequence

MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Homology
BLAST of Lag0041605 vs. NCBI nr
Match: KAG6599855.1 (Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030530.1 Tobamovirus multiplication protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIY 260

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 292

BLAST of Lag0041605 vs. NCBI nr
Match: XP_023539850.1 (tobamovirus multiplication protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIY 260

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 292

BLAST of Lag0041605 vs. NCBI nr
Match: XP_022977192.1 (protein TOM THREE HOMOLOG 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDQAADLDVLDHPVLNFIY 260

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 292

BLAST of Lag0041605 vs. NCBI nr
Match: KAG6600798.1 (Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICFSCFL+RCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDQAADLDVLDHPVLNFIY 260

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           Y+LVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YMLVEILPSSLVLFILRKLPPKRGITQYHPIR 292

BLAST of Lag0041605 vs. NCBI nr
Match: XP_022942344.1 (protein TOM THREE HOMOLOG 1 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICFSCFL+RCIMMCFNAF+QAADLDVLDHPVLNFIY
Sbjct: 201 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCIMMCFNAFDQAADLDVLDHPVLNFIY 260

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           Y+LVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 261 YMLVEILPSSLVLFILRKLPPKRGITQYHPIR 292

BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match: Q402F3 (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICFSCFL+RC+MMCFNAFN+AADLDVLDHP+LN IY
Sbjct: 203 MLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFNKAADLDVLDHPILNLIY 262

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           YLLVEILPSSLVLFILRKLPPKRGITQYHPIR
Sbjct: 263 YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 294

BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match: Q948R8 (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-43
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF+AF+ AADLDVLDHP+LNFIY
Sbjct: 202 MLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPILNFIY 261

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           YLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 262 YLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293

BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match: Q9ZUM2 (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 9.6e-43
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           MLQRFPVESKGRRKKLQEVGYVTTICF+CFL+RCIMMCF AF++ A+LDVLDHP+LNFIY
Sbjct: 212 MLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPILNFIY 271

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           YLLVEILPSSLVLFILRKLPPKRGITQYH IR
Sbjct: 272 YLLVEILPSSLVLFILRKLPPKRGITQYHQIR 303

BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match: Q9FEG2 (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.0e-33
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           ML+RFP+ESKGRRKKL EVG VT ICF+CFL+RC+++  +AF++   LDVLDHPVLN IY
Sbjct: 200 MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCVVVAVSAFDKDLTLDVLDHPVLNLIY 259

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPIR 93
           Y++VE+LPS+LVLFILRKLPPKR   QYHPI+
Sbjct: 260 YMVVEVLPSALVLFILRKLPPKRVSAQYHPIQ 291

BLAST of Lag0041605 vs. ExPASy Swiss-Prot
Match: Q402F4 (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-32
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0

Query: 1   MLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFNQAADLDVLDHPVLNFIY 60
           ML+RFP+ESKGRRKKL EVG VT ICF+CFL+ C ++  +AF+  A LDVLDHPVLN IY
Sbjct: 197 MLRRFPIESKGRRKKLHEVGSVTAICFTCFLISCFVVVLSAFDPDASLDVLDHPVLNLIY 256

Query: 61  YLLVEILPSSLVLFILRKLPPKRGITQYHPI 92
           YLLVEILPS+LVL+ILRKLPPKR   QYHPI
Sbjct: 257 YLLVEILPSALVLYILRKLPPKRVSAQYHPI 287

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6599855.11.1e-4398.91Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_023539850.11.1e-4398.91tobamovirus multiplication protein 3-like [Cucurbita pepo subsp. pepo][more]
XP_022977192.11.1e-4398.91protein TOM THREE HOMOLOG 1-like isoform X1 [Cucurbita maxima][more]
KAG6600798.12.4e-4396.74Tobamovirus multiplication protein 3, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022942344.12.4e-4396.74protein TOM THREE HOMOLOG 1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q402F31.2e-4594.57Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 S... [more]
Q948R81.9e-4391.30Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1[more]
Q9ZUM29.6e-4390.22Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=... [more]
Q9FEG29.0e-3370.65Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=... [more]
Q402F42.0e-3273.63Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009457THH1/TOM1/TOM3 domainPFAMPF06454DUF1084coord: 1..92
e-value: 3.8E-50
score: 170.8
NoneNo IPR availablePANTHERPTHR31142:SF32TOBAMOVIRUS MULTIPLICATION PROTEIN 3coord: 1..92
IPR040226THH1/TOM1/TOM3PANTHERPTHR31142TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041605.1Lag0041605.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005774 vacuolar membrane