Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAAGGAGAGGTTTGCTAAACTCCTCCTTGGTGAAGACATGTCGGGGGGAGGGAAAGGGGTTTGCACCGCCCTTGCTATCTCAAATGCCATCACCAATCTCTTTGGTAGATCCTCCATTTGAGCCTCTTATTTATTTATTTTTGTAGCGTAAAGCTTATTAACATTTCTGAATACTGTTAGAACATTCTGGTTGGAAATTTCAGCTAGTGTATTTGGTGAATTATGGAGATTGGAGCCACTGGCGCCACAAAAAAGGGCAATGTGACACAGAGAAATGGAATGGCTTTTATGTGTTTGTGATTCCATTGTGGAGCTTGTTTCTACCGTTCAGCCTTTCCCCGGTGGAGGTACTTATGAAGTAATGATGTCTAAACCATGCTTGGATTTGCACATGAACCTCCCTACCTTGGAAGTGCTTGTTGGAGATATGCTCAAATAAGAACTGAGTTACACTAGCAAACTGATTACACCTTAACTGGGTACTAACAATTACAGTGGAAATAACAATACAAACACTGTATATAAGACAAATGCTGTAAAATATATTGACAATAAATAGTCGAGGCACGCTTACAAAGCGCTGTCCTGAAGACAATTATTCGCTTTGCACAGGTTACTAGCAGGCTACAGCGATCGTCTCAGCAGGATACAACGACCAATTTCAGTAGAACAGCAACCTCGAACTACTTGGATCTGACAGAACTCTTGGATACTTGCTCTCAACTTGACTCAAGATCAAAGGAAACAAAGAAAGAAGAAAGAATGCTCCAATTGGAATGA
mRNA sequence
ATGACGAAGGAGAGGTTTGCTAAACTCCTCCTTGGTGAAGACATGTCGGGGGGAGGGAAAGGGGTTTGCACCGCCCTTGCTATCTCAAATGCCATCACCAATCTCTTTGAACATTCTGGTTGGAAATTTCAGCTAGTGTATTTGGTGAATTATGGAGATTGGAGCCACTGGCGCCACAAAAAAGGGCAATGTGACACAGAGAAATGGAATGGCTTTTATGTGTTTGTGATTCCATTGTGGAGCTTGTTTCTACCGTTCAGCCTTTCCCCGGTGGAGGTTACTAGCAGGCTACAGCGATCGTCTCAGCAGGATACAACGACCAATTTCAGTAGAACAGCAACCTCGAACTACTTGGATCTGACAGAACTCTTGGATACTTGCTCTCAACTTGACTCAAGATCAAAGGAAACAAAGAAAGAAGAAAGAATGCTCCAATTGGAATGA
Coding sequence (CDS)
ATGACGAAGGAGAGGTTTGCTAAACTCCTCCTTGGTGAAGACATGTCGGGGGGAGGGAAAGGGGTTTGCACCGCCCTTGCTATCTCAAATGCCATCACCAATCTCTTTGAACATTCTGGTTGGAAATTTCAGCTAGTGTATTTGGTGAATTATGGAGATTGGAGCCACTGGCGCCACAAAAAAGGGCAATGTGACACAGAGAAATGGAATGGCTTTTATGTGTTTGTGATTCCATTGTGGAGCTTGTTTCTACCGTTCAGCCTTTCCCCGGTGGAGGTTACTAGCAGGCTACAGCGATCGTCTCAGCAGGATACAACGACCAATTTCAGTAGAACAGCAACCTCGAACTACTTGGATCTGACAGAACTCTTGGATACTTGCTCTCAACTTGACTCAAGATCAAAGGAAACAAAGAAAGAAGAAAGAATGCTCCAATTGGAATGA
Protein sequence
MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNLFEHSGWKFQLVYLVNYGDWSHWRHKKGQCDTEKWNGFYVFVIPLWSLFLPFSLSPVEVTSRLQRSSQQDTTTNFSRTATSNYLDLTELLDTCSQLDSRSKETKKEERMLQLE
Homology
BLAST of Lag0041473 vs. NCBI nr
Match:
KAF2318982.1 (hypothetical protein GH714_012143 [Hevea brasiliensis])
HSP 1 Score: 94.7 bits (234), Expect = 6.9e-16
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNLFEHSGWKFQLVYLVNYGDWSHWRHK 60
M KERFAKLLLGEDMSG GKGVCTALAISNAITNL + N GDWSH +
Sbjct: 97 MMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLC--------VTIFGNCGDWSHCLQR 156
Query: 61 KGQCDTEKWNGFYVFVI 78
+ QC E+W+GF+V ++
Sbjct: 157 RNQCGEERWSGFFVSIM 165
BLAST of Lag0041473 vs. NCBI nr
Match:
RWR90643.1 (rop guanine nucleotide exchange factor 1-like protein [Cinnamomum micranthum f. kanehirae])
HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNLFEHSGWKFQLVYLVNY 52
M KERFAKLLLGEDMSGGGKGVCTALAISNAITNL S + V L Y
Sbjct: 98 MMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSGESRFPSPFVTLGTY 148
BLAST of Lag0041473 vs. NCBI nr
Match:
KAG6570990.1 (Rop guanine nucleotide exchange factor 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 49/101 (48.51%), Postives = 58/101 (57.43%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNLFEH---SGWKFQLVYLVNYGDWSHW 60
M KERFAKLLLGEDMSGGGKGVCTALAISNAITNL W+ + + W
Sbjct: 108 MMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASIFGELWRLEPLAPQKQAMW--- 167
Query: 61 RHKKGQ-----CDTEKWNGFYVFVIPLWSLFLPFSLSPVEV 94
H++ + CD+ + SLFL F+LS VEV
Sbjct: 168 -HREMEWLLCVCDS------------MLSLFLLFNLSLVEV 192
BLAST of Lag0041473 vs. NCBI nr
Match:
KAG0474984.1 (hypothetical protein HPP92_014670 [Vanilla planifolia])
HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 3 KERFAKLLLGEDMSGGGKGVCTALAISNAITNLFEHSGWKFQLVYLVNYGDWSHWRHKKG 62
KERFAKLLLGED SGG KGV TALA+SNAIT+L + N G+WS K+
Sbjct: 369 KERFAKLLLGEDPSGGTKGVSTALALSNAITSL--------SVSVFGNSGNWSLCLKKER 428
Query: 63 QCDTEKWNGFYVFVIPLWSLFLPFSLSPVEV 94
T+KW G ++ I WS ++ P+EV
Sbjct: 429 TDGTKKWTGCFLQRIIWWSWCPQSNMGPMEV 451
BLAST of Lag0041473 vs. NCBI nr
Match:
TYI37851.1 (hypothetical protein ES332_A03G243800v1 [Gossypium tomentosum])
HSP 1 Score: 72.0 bits (175), Expect = 4.8e-09
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNLFE------HSGWKFQLVYLVNYGD 54
M KERFAKLLLGED+SGGGKGVCTALAISNAITNL E WK ++ +L+ D
Sbjct: 95 MMKERFAKLLLGEDLSGGGKGVCTALAISNAITNLSEPLAPQKKEMWKREMEWLLCVSD 153
BLAST of Lag0041473 vs. ExPASy Swiss-Prot
Match:
Q93ZY2 (Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF1 PE=1 SV=2)
HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNL 36
M KERFAKLLLGEDMSGGGKGVCTALAISNAITNL
Sbjct: 93 MMKERFAKLLLGEDMSGGGKGVCTALAISNAITNL 127
BLAST of Lag0041473 vs. ExPASy Swiss-Prot
Match:
F4K295 (Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF5 PE=2 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 9.0e-11
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNL 36
M KERFAKLLLGEDMSG GKGVCTALAISNAITNL
Sbjct: 105 MMKERFAKLLLGEDMSGSGKGVCTALAISNAITNL 139
BLAST of Lag0041473 vs. ExPASy Swiss-Prot
Match:
Q9LZN0 (Rop guanine nucleotide exchange factor 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF7 PE=1 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 7.7e-10
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0
Query: 1 MTKERFAKLLLGEDMSGGGKGVCTALAISNAITNL 36
M KERF+KLLLGEDMSG G GVCTALAISNAITNL
Sbjct: 73 MMKERFSKLLLGEDMSGSGNGVCTALAISNAITNL 107
BLAST of Lag0041473 vs. ExPASy Swiss-Prot
Match:
A4IJ27 (Rop guanine nucleotide exchange factor 3 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF3 PE=2 SV=1)
HSP 1 Score: 64.7 bits (156), Expect = 1.0e-09
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 3 KERFAKLLLGEDMSGGGKGVCTALAISNAITNLF 37
KERFAKLLLGEDMSG GKGVCTA+ ISNAITNL+
Sbjct: 109 KERFAKLLLGEDMSGSGKGVCTAVTISNAITNLY 142
BLAST of Lag0041473 vs. ExPASy Swiss-Prot
Match:
Q9LQ89 (Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF2 PE=1 SV=2)
HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 3 KERFAKLLLGEDMSGGGKGVCTALAISNAITNLF 37
KERF+KLLLGEDMSG GKGVCTA+ ISNAITNL+
Sbjct: 121 KERFSKLLLGEDMSGSGKGVCTAVTISNAITNLY 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAF2318982.1 | 6.9e-16 | 59.74 | hypothetical protein GH714_012143 [Hevea brasiliensis] | [more] |
RWR90643.1 | 2.8e-09 | 74.51 | rop guanine nucleotide exchange factor 1-like protein [Cinnamomum micranthum f. ... | [more] |
KAG6570990.1 | 2.8e-09 | 48.51 | Rop guanine nucleotide exchange factor 1, partial [Cucurbita argyrosperma subsp.... | [more] |
KAG0474984.1 | 2.8e-09 | 47.25 | hypothetical protein HPP92_014670 [Vanilla planifolia] | [more] |
TYI37851.1 | 4.8e-09 | 64.41 | hypothetical protein ES332_A03G243800v1 [Gossypium tomentosum] | [more] |
Match Name | E-value | Identity | Description | |
Q93ZY2 | 1.8e-11 | 97.14 | Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana OX=3702 GN=ROPG... | [more] |
F4K295 | 9.0e-11 | 94.29 | Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana OX=3702 GN=ROPG... | [more] |
Q9LZN0 | 7.7e-10 | 88.57 | Rop guanine nucleotide exchange factor 7 OS=Arabidopsis thaliana OX=3702 GN=ROPG... | [more] |
A4IJ27 | 1.0e-09 | 88.24 | Rop guanine nucleotide exchange factor 3 OS=Arabidopsis thaliana OX=3702 GN=ROPG... | [more] |
Q9LQ89 | 2.2e-09 | 85.29 | Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana OX=3702 GN=ROPG... | [more] |