Lag0041470 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041470
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr13: 18516102 .. 18516544 (+)
RNA-Seq ExpressionLag0041470
SyntenyLag0041470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCAAAGAAAGCTCCCGCGAAGGTTACCACATCAAGCGACTCTTACACTGGTCCTGTCACTCGTAGTCGCTCCCAAGGAATTGAGATCAAGGAGGATCATACTCCTCTGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAACCGAGAAGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAGGGAAGGCTGTCATCGTGA

mRNA sequence

ATGGCACCAAAGAAAGCTCCCGCGAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAACCGAGAAGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAGGGAAGGCTGTCATCGTGA

Coding sequence (CDS)

ATGGCACCAAAGAAAGCTCCCGCGAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAAACCGAGAAGGCTGAGTCTAGCCAGACCCCTGCTGCAGGAAAGAATGATAAGGGAAGGCTGTCATCGTGA

Protein sequence

MAPKKAPAKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQTEKAESSQTPAAGKNDKGRLSS
Homology
[Close]
BLAST of Lag0041470 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 10  ISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKL 69
           I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+
Sbjct: 43  ILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKI 102

Query: 70  NLLMKAVDERDLEIAYLKNQLQT-EKAESSQTPAAGKNDKGR 111
           NLLMK VDERD EIA LK Q+QT E AESSQTP    +DKG+
Sbjct: 103 NLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGK 144

[Close]
BLAST of Lag0041470 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 10  ISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKL 69
           I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+
Sbjct: 43  ILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKI 102

Query: 70  NLLMKAVDERDLEIAYLKNQLQT-EKAESSQTPAAGKNDKGR 111
           NLLMK VDERD EIA LK Q+QT E AESSQTP    +DKG+
Sbjct: 103 NLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGK 144

[Close]
BLAST of Lag0041470 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 10  ISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKL 69
           I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+
Sbjct: 43  ILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKI 102

Query: 70  NLLMKAVDERDLEIAYLKNQLQT-EKAESSQTPAAGKNDKGR 111
           NLLMK VDERD EIA LK Q+QT E AESSQTP    +DKG+
Sbjct: 103 NLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGK 144

[Close]
BLAST of Lag0041470 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 10  ISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKL 69
           I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+
Sbjct: 43  ILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKI 102

Query: 70  NLLMKAVDERDLEIAYLKNQLQT-EKAESSQTPAAGKNDKGR 111
           NLLMK VDERD EIA LK Q+QT E AESSQTP    +DKG+
Sbjct: 103 NLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGK 144

[Close]
BLAST of Lag0041470 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 10  ISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKL 69
           I K + ES K  + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+
Sbjct: 43  ILKQLMESPKAGIVIKENPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKI 102

Query: 70  NLLMKAVDERDLEIAYLKNQLQT-EKAESSQTPAAGKNDKGR 111
           NLLMK VDERD EIA LK Q+QT E AESSQTP    +DKG+
Sbjct: 103 NLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGK 144

The following BLAST results are available for this feature:
BLAST of Lag0041470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739134.13.4e-1555.88uncharacterized protein LOC116402863 [Cucumis sativus][more]
XP_031742032.13.4e-1555.88uncharacterized protein LOC116404025 [Cucumis sativus][more]
XP_031742199.13.4e-1555.88uncharacterized protein LOC105435721 [Cucumis sativus][more]
XP_031735972.13.4e-1555.88uncharacterized protein LOC116401693 [Cucumis sativus][more]
XP_031737053.13.4e-1555.88uncharacterized protein LOC116402138 [Cucumis sativus][more]
BLAST of Lag0041470 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041470.1Lag0041470.1mRNA