Lag0041425 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041425
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H-like superfamily protein
Location	chr13: 17553901 .. 17555818 (-)
RNA-Seq Expression	Lag0041425
Synteny	Lag0041425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTATTGTTAAACAAGAGTGCTTATTTCTTAGCTCAAAATGCTACTGCAGCTGGGAAGCTTCATCTTCGGACTCGTCGACCACAAAAGCTTTCTGGAAGGATTTTTGGAAAGCTAAGGTCTTGCTTAGAGAGAAGATCTGTGCATGGAGGGCTATTCAAAACATTCTTCCATCCCTTCTTAATATCTCCTCAAAAGGGATAGATTCTAACAACCTTTGTTTTCTATGTAGCTCCAAAGCAGAATCGAAAAATCACATCTTTTGGGAATGCAAGGTATCTAGCAACGTGTGGTCTCATTTTTTTCCCAAATTTACTTATTCCTCGTGATATGTGTAGGGGAGATCGGGACTTGATGGGAATATGGAGAAGGATTGTGAACAAAGAAGAAAAAGCAAAAATTTGCACATATGGCAACATAGAAACGCAGTGAAAAACAAGATTGCAAAGCCAGACCACAACATGATTATCCTAGCCATAGAAGTCAGACAAGAAAGTAGAGATTATCAGAGCAAGACCATCAATAATCCTTAGAGATCAGCGAACCTTTTGAGTCAGGGGAATGGGGCGCCTCCTCCTCACCTATTCTGGAAATTGAATACTAATGCATCTTGGTCAAAAGACAAAAAGTTGGGGGGCATTGGATGGATTGCCCGTGACTCAAATGGATCTTTCTTTTGCGTAGGATTCCAAAAGGTAATCAAGAATTGGTCGATCAAATGCCTGGAGATGAAAGCGATTATGGAGAGTTTGAGAAGCTTACTTGTTCGGATTGGTAGTCCATTCCCGTGGATCATCATCAAATCAGATTCTACTGAAGCAATTGTCATCCTCAACCACGAATCTCAAGACTTCATAGAGGTGCGTTCTTTGGGGGATGAAGTGGAATCATTGGTGGCGGCAGTGGGAGGTGTTTCCTTCTCTTTCAGTCGACGGGAAAACAACTTGGAAGCACACTTTCTGGTGCAAATGGCTTACACCCACTCTAATGGGGAAGATTCTAGCTCAAATTTCTTGGCAGAAGAAGGTTTTTTTTTTTGTATGGCGGATAAGCCTCCTTGGTTAAACTCTTCCCTTTCTTTCGAAGAGTGACTGTTTGGTTGGTTGTTTGGTTGGTGATTGATTTAATGAAGGTTATTTAAAAAAAAACCATAAGCTGTCGTGAGGACAAGACCATATTATTTATTTCAGTGAAGACATATCTCGTTGTTGAACTAAAAAAATAATAGAAATAAGAATTAAAATGACAAAATAAAATTTGAGGCAAAAGAAAAGAAAAAAAAAAGAAGAGAAAAAAGGCCCCAAGGAGTAGAGACTAGATTCTCGGGTAAATTAGATAAACTAGTAAGAAACACGTGTGATGCACGTGAAAATTATAATTCTAATTTAAAGTAAAAAATACAAATAAAAAAATGTTATAGTTTCATGCTAATTACCGCTGAGCTATGCTCGTTTTGACAAAAAAAAAATGCAATAGTTAGAAATTAGAACATCGTTTATCGTTTAATTTTATAAAAGAGAATATTCATCACATCATCTTCTAAAATTTAAATTTAATATTTATTTAATTAAAAAAAAAAGAAAACAATTTCATATGAATTTAAAAAGGTGGACAAAATAGGGAGAATTTTTCTCTTACTGTGAAATTTTAATTTCAAAGATGATTAAATTTATACATATTATTGAAAATTATCATATCATATCATAAATTATTAGAAAAGAAAAGCTCAGGCCACTCTTTTAACCCATTCTGTAAAATAAAATAAAAATGAATAAAAGAGGGAAACCTAGCTGACGCCACTTCTTCTTCTTCACCGCCGCATCTCTCCCGTTCGCTGCCGCGCCGCCGCCATCGTCGTCTTTCTTCCGTTCGTGCCGCCGCAGCCTCCTTCGATTTTATACTACCTTGCTGTTAA

mRNA sequence

ATGGCTCTATTGTTAAACAAGAGTGCTTATTTCTTAGCTCAAAATGCTACTGCAGCTGGGAAGCTTCATCTTCGGACTCGTCGACCACAAAAGCTTTCTGGAAGGATTTTTGGAAAGCTAAGCTCCAAAGCAGAATCGAAAAATCACATCTTTTGGGAATGCAAGGGGAGATCGGGACTTGATGGGAATATGGAGAAGGATTGTGAACAAAGAAGAAAAAGCAAAAATTTGCACATATGGCAACATAGAAACGCAGTGAAAAACAAGATTGCAAAGCCAGACCACAACATGATTATCCTAGCCATAGAAGGGAATGGGGCGCCTCCTCCTCACCTATTCTGGAAATTGAATACTAATGCATCTTGGTCAAAAGACAAAAAGTTGGGGGGCATTGGATGGATTGCCCGTGACTCAAATGGATCTTTCTTTTGCGTAGGATTCCAAAAGGTAATCAAGAATTGGTCGATCAAATGCCTGGAGATGAAAGCGATTATGGAGAGTTTGAGAAGCTTACTTGTTCGGATTGGTAGTCCATTCCCGTGGATCATCATCAAATCAGATTCTACTGAAGCAATTGTCATCCTCAACCACGAATCTCAAGACTTCATAGAGGTGCGTTCTTTGGGGGATGAAGTGGAATCATTGGTGGCGGCAGTGGGAGGTGTTTCCTTCTCTTTCAGTCGACGGGAAAACAACTTGGAAGCACACTTTCTGGTGCAAATGGCTTACACCCACTCTAATGGGGAAGATTCTAGCTCAAATTTCTTGGCAGAAGAAGAGGGAAACCTAGCTGACGCCACTTCTTCTTCTTCACCGCCGCATCTCTCCCGTTCGCTGCCGCGCCGCCGCCATCGTCGTCTTTCTTCCGTTCGTGCCGCCGCAGCCTCCTTCGATTTTATACTACCTTGCTGTTAA

Coding sequence (CDS)

ATGGCTCTATTGTTAAACAAGAGTGCTTATTTCTTAGCTCAAAATGCTACTGCAGCTGGGAAGCTTCATCTTCGGACTCGTCGACCACAAAAGCTTTCTGGAAGGATTTTTGGAAAGCTAAGCTCCAAAGCAGAATCGAAAAATCACATCTTTTGGGAATGCAAGGGGAGATCGGGACTTGATGGGAATATGGAGAAGGATTGTGAACAAAGAAGAAAAAGCAAAAATTTGCACATATGGCAACATAGAAACGCAGTGAAAAACAAGATTGCAAAGCCAGACCACAACATGATTATCCTAGCCATAGAAGGGAATGGGGCGCCTCCTCCTCACCTATTCTGGAAATTGAATACTAATGCATCTTGGTCAAAAGACAAAAAGTTGGGGGGCATTGGATGGATTGCCCGTGACTCAAATGGATCTTTCTTTTGCGTAGGATTCCAAAAGGTAATCAAGAATTGGTCGATCAAATGCCTGGAGATGAAAGCGATTATGGAGAGTTTGAGAAGCTTACTTGTTCGGATTGGTAGTCCATTCCCGTGGATCATCATCAAATCAGATTCTACTGAAGCAATTGTCATCCTCAACCACGAATCTCAAGACTTCATAGAGGTGCGTTCTTTGGGGGATGAAGTGGAATCATTGGTGGCGGCAGTGGGAGGTGTTTCCTTCTCTTTCAGTCGACGGGAAAACAACTTGGAAGCACACTTTCTGGTGCAAATGGCTTACACCCACTCTAATGGGGAAGATTCTAGCTCAAATTTCTTGGCAGAAGAAGAGGGAAACCTAGCTGACGCCACTTCTTCTTCTTCACCGCCGCATCTCTCCCGTTCGCTGCCGCGCCGCCGCCATCGTCGTCTTTCTTCCGTTCGTGCCGCCGCAGCCTCCTTCGATTTTATACTACCTTGCTGTTAA

Protein sequence

MALLLNKSAYFLAQNATAAGKLHLRTRRPQKLSGRIFGKLSSKAESKNHIFWECKGRSGLDGNMEKDCEQRRKSKNLHIWQHRNAVKNKIAKPDHNMIILAIEGNGAPPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHSNGEDSSSNFLAEEEGNLADATSSSSPPHLSRSLPRRRHRRLSSVRAAAASFDFILPCC

Homology

[Close]

BLAST of Lag0041425 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-12
Identity = 58/168 (34.52%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 86  VKNKIAKPDHNMIILAIEGNGA---PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSF 145
           +K K    D ++I    +  GA   PP    WKLNTNA+W  D   GGIGWI RD  G  
Sbjct: 56  LKGKSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEV 115

Query: 146 FCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDF 205
                + +    +I  LE+ AI E LR++      P   I ++SDS EAI +L+ + QD 
Sbjct: 116 IKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRP---IHLESDSLEAIHLLHRQCQDQ 175

Query: 206 IEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHSNGED 251
            E+  L +E+  ++  +  VS     RE N  AH L + A  +   E+
Sbjct: 176 TEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAMENDLREE 220

[Close]

BLAST of Lag0041425 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-11
Identity = 58/173 (33.53%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 86  VKNKIAKPDHNMIILAIEGNGA---PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSF 145
           +K K A  D ++I    +  GA   PP    WKLNT+A+W  D   GGIGWI RD  G  
Sbjct: 56  LKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEV 115

Query: 146 FCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPW-----IIIKSDSTEAIVILNH 205
                + +    +I  LE+ AI E LR++      P        I ++SDS EAI +L+ 
Sbjct: 116 IKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR 175

Query: 206 ESQDFIEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHSNGED 251
           + QD  E+  L +E+  ++  +  VS     RE N  AH L + A  +   E+
Sbjct: 176 QCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAMENDLREE 228

[Close]

BLAST of Lag0041425 vs. NCBI nr
Match: XP_013694754.1 (uncharacterized protein LOC106398790 [Brassica napus])

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-10
Identity = 46/158 (29.11%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 79  IWQHRNAVKNKIAKPDHNMIILAIEGNGAPPPHLFWKLNTNASWSKDKKLGGIGWIARDS 138
           +W+ R  VK K  KP    I    E    PPP    K NT+A+W ++ ++GG+GW+ RD 
Sbjct: 113 VWKSREEVKLKEVKPPAAAI---PERRWTPPPQGKLKCNTDATWMQETEVGGVGWVLRDH 172

Query: 139 NGSFFCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPWIIIKSDSTEAIVILNHE 198
           NG     G +++    S+   EM+A+  ++R+L    G  +  +  +SDS   + +LN+E
Sbjct: 173 NGDMLWAGAKRLPDMGSVHETEMEALRWAIRTL---AGFGYRNVTFESDSQVLVRMLNNE 232

Query: 199 SQDFIEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAH 237
            + +  V+ +   + S  + +  V  ++  R  N  AH
Sbjct: 233 EEIWPRVKPMIQAISSSPSGMEKVEVAYYPRSGNKIAH 264

[Close]

BLAST of Lag0041425 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-10
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 108 PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMES 167
           PPP   W LN +ASWS     GGIGWI R  +G     G + V    ++K LE  AI+E 
Sbjct: 73  PPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEG 132

Query: 168 LRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFS 227
           LR+ L  +G   P + I++DS E   +LN + +D  +   + +E+ +L  +   ++F+  
Sbjct: 133 LRN-LTNLGVLRP-LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKV 192

Query: 228 RRENNLEAHFLVQMA 243
            RE N  AH L Q A
Sbjct: 193 GRETNGCAHSLAQRA 205

[Close]

BLAST of Lag0041425 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-09
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 108 PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMES 167
           PPP L  K+N +A+WS  +  GG+GW+ RDS G   C G Q  +   S   +E+ AI  +
Sbjct: 799 PPPGLL-KVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRHA 858

Query: 168 LRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFS 227
           L             II++SDS + I++LN  +    ++  +  ++  LVA++  VSF F+
Sbjct: 859 LSEC---ANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFA 918

Query: 228 RRENNLEAH 237
            R  N  AH
Sbjct: 919 PRSCNQAAH 923

[Close]

BLAST of Lag0041425 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.3e-13
Identity = 58/168 (34.52%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 86  VKNKIAKPDHNMIILAIEGNGA---PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSF 145
           +K K    D ++I    +  GA   PP    WKLNTNA+W  D   GGIGWI RD  G  
Sbjct: 56  LKGKSTNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEV 115

Query: 146 FCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDF 205
                + +    +I  LE+ AI E LR++      P   I ++SDS EAI +L+ + QD 
Sbjct: 116 IKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRP---IHLESDSLEAIHLLHRQCQDQ 175

Query: 206 IEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHSNGED 251
            E+  L +E+  ++  +  VS     RE N  AH L + A  +   E+
Sbjct: 176 TEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAMENDLREE 220

[Close]

BLAST of Lag0041425 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-12
Identity = 58/173 (33.53%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 86  VKNKIAKPDHNMIILAIEGNGA---PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSF 145
           +K K A  D ++I    +  GA   PP    WKLNT+A+W  D   GGIGWI RD  G  
Sbjct: 56  LKGKSANKDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEV 115

Query: 146 FCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPW-----IIIKSDSTEAIVILNH 205
                + +    +I  LE+ AI E LR++      P        I ++SDS EAI +L+ 
Sbjct: 116 IKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHR 175

Query: 206 ESQDFIEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHSNGED 251
           + QD  E+  L +E+  ++  +  VS     RE N  AH L + A  +   E+
Sbjct: 176 QCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAMENDLREE 228

[Close]

BLAST of Lag0041425 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-10
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 108 PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMES 167
           PPP   W LN +ASWS     GGIGWI R  +G     G + V    ++K LE  AI+E 
Sbjct: 73  PPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEG 132

Query: 168 LRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFS 227
           LR+ L  +G   P + I++DS E   +LN + +D  +   + +E+ +L  +   ++F+  
Sbjct: 133 LRN-LTNLGVLRP-LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKV 192

Query: 228 RRENNLEAHFLVQMA 243
            RE N  AH L Q A
Sbjct: 193 GRETNGCAHSLAQRA 205

[Close]

BLAST of Lag0041425 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = 0


Query: 108 PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMES 167
           PPP L  K+N +A+WS  +  GG+GW+ RDS G   C G Q  +   S   +E+ AI  +
Sbjct: 799 PPPGLL-KVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRHA 858

Query: 168 LRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFS 227
           L             II++SDS + I++LN  +    ++  +  ++  LVA++  VSF F+
Sbjct: 859 LSEC---ANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSFVFA 918

Query: 228 RRENNLEAH 237
            R  N  AH
Sbjct: 919 PRSCNQAAH 923

[Close]

BLAST of Lag0041425 vs. ExPASy TrEMBL
Match: A0A6J5YDN0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 43/129 (33.33%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 108 PPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMES 167
           PPP L  K+N +A+WS  +  GG+GW+ RDS     C G Q  +   S   +E+ AI  +
Sbjct: 354 PPPGLL-KVNCDAAWSAQRMGGGVGWVIRDSFSLLLCAGGQGDLHGSSALMMELLAIRHA 413

Query: 168 LRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFS 227
           L             II++SDS + I++LN  +    ++  +  ++  LVA++  VSF F+
Sbjct: 414 LSEC---ANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSQVSFVFA 473

Query: 228 RRENNLEAH 237
            R  N  AH
Sbjct: 474 PRSCNQAAH 478

[Close]

BLAST of Lag0041425 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-11
Identity = 49/177 (27.68%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 71  RRKSKNLHIWQHRNAVKNKIAKPDHNMIILAIEGNGAPPPHLFWKLNTNASWSKDKKLGG 130
           RR   +L  W+ R   ++   KP  N    +  G   PPPH + K NT+A+W++D +  G
Sbjct: 388 RRAEDDLEEWRIRTEAESCGTKPQVNR---SSCGRWRPPPHQWVKCNTDATWNRDNERCG 447

Query: 131 IGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMESLRSLLVRIGSPFPWIIIKSDSTE 190
           IGW+ R+  G    +G + + K  S+   E++A+  ++ SL       + ++I +SDS  
Sbjct: 448 IGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSL---SRFQYNYVIFESDSQV 507

Query: 191 AIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHSN 248
            I ILN++ + +  ++    +++ L++    V F F  RE N  A  + + + +  N
Sbjct: 508 LIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVARESLSFLN 557

[Close]

BLAST of Lag0041425 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 8.9e-08
Identity = 45/181 (24.86%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 71  RRKSKNLHIWQHRNAVKNKIAKP--DHNMIILAIEGNGAPPPHLFWKLNTNASWSKDKKL 130
           RR  ++   W  R  ++ K + P  + N+ +         PP+ + K NT+A+W  +   
Sbjct: 105 RRAMEDFEEWSTRRELEGKASGPQVERNLSV-----QWKAPPYQWVKCNTDATWQLENPR 164

Query: 131 GGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIMESLR-SLLVRIGSPFPWIIIKSD 190
            GIGWI R+ +G    +G + + +  ++    ++A +E+LR ++L      +  II +SD
Sbjct: 165 CGIGWILRNESGGVLWMGARALPRTKNV----LEAELEALRWAVLTMSRFNYKRIIFESD 224

Query: 191 STEAIVILNHESQDF-IEVRSLGDEVESLVAAVGGVSFSFSRRENNLEAHFLVQMAYTHS 248
           +   + +LN  S DF   ++   ++++ L+     V F F+ R  N  A  + + + + S
Sbjct: 225 AQALVNLLN--SDDFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFS 274

[Close]

BLAST of Lag0041425 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.2e-05
Identity = 33/136 (24.26%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 107 APPPHLFWKLNTNASWSKDKKLGGIGWIARDSNGSFFCVGFQKVIKNWSIKCLEMKAIME 166
           +PP     K N +AS  +   + G+GWI R+S G+    G  K     + +  E   ++ 
Sbjct: 106 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIW 165

Query: 167 SLRSLLVRIGSPFPWIIIKSDSTEAIVILNHESQDFIEVRSLGDEVESLVAAVGGVSFSF 226
           ++++     G     +I + D+     ++N +S +   ++   D ++S + +   + FSF
Sbjct: 166 AIQA---SYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFSF 225

Query: 227 SRRENNLEAHFLVQMA 243
             RE N  A FL + A
Sbjct: 226 KHREQNGCADFLAKQA 237

The following BLAST results are available for this feature:

BLAST of Lag0041425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143535.1	1.9e-12	34.52	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	1.2e-11	33.53	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_013694754.1	3.1e-10	29.11	uncharacterized protein LOC106398790 [Brassica napus]	[more]
XP_022155262.1	5.2e-10	36.30	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
CAB4303756.1	5.8e-09	34.11	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lag0041425 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP26	9.3e-13	34.52	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	6.0e-12	33.53	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DNV9	2.5e-10	36.30	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5WPU6	2.8e-09	34.11	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5YDN0	1.1e-08	33.33	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=...	[more]

BLAST of Lag0041425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.3e-11	27.68	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	8.9e-08	24.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	3.2e-05	24.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 117..242 e-value: 1.9E-14 score: 53.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 114..249 e-value: 5.7E-8 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..276
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 107..248
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 116..238 e-value: 9.77047E-12 score: 59.25
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 114..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041425.1	Lag0041425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity