Lag0040871 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040871
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	17.8 kDa class I heat shock protein-like
Location	chr13: 9177122 .. 9177685 (-)
RNA-Seq Expression	Lag0040871
Synteny	Lag0040871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGACTTTGGTCGCACTCCCAACACAATAACCATGTCGCTTATTCCAAGCATTTTCGGTGGGCGACGGAGCAACATCTTCAACCCCTTGGAAGGCTTCCCATTTTCAAACTCACTGGGCAATGTTCCTTCCTCTGCTCGCGAGACCTCTGTTTTTGCCAACACTCGAATCGACTGGAAAGAGACCCCAGAAGCTCACATCTTCAAAGCCGATCTTCCCGAGATCAAAAAAGGGGAAGTCAAAGTTGAAGTGGAAGAAGACAGAGTTTTGCAGATCAGTGGAGAGAGAAGCAAAGAGCAAGAAGAGAAGAACGACAAATGGCATAGAATGGAAAGAAGCAATGGGAAGTTCATGAGGAGATTCAGGTTGCCGGAGAATGCAAAAGTCGAAGAGGTGAAAGCCAGCATGGAGAATGGAGTGCTGATTTTGATAGTGCGCAAAATGGAAGAGAAGAAGCCTAAAATCAAGTCAATTGTGTTAAGCCAGCCCATTAATTACTTCCTCTATTGTTTTGCTTTATATTTGGCTAAAATTTGGAGAGAACGAACCTGGAGTGTTTGA

mRNA sequence

ATGTGGGACTTTGGTCGCACTCCCAACACAATAACCATGTCGCTTATTCCAAGCATTTTCGGTGGGCGACGGAGCAACATCTTCAACCCCTTGGAAGGCTTCCCATTTTCAAACTCACTGGGCAATGTTCCTTCCTCTGCTCGCGAGACCTCTGTTTTTGCCAACACTCGAATCGACTGGAAAGAGACCCCAGAAGCTCACATCTTCAAAGCCGATCTTCCCGAGATCAAAAAAGGGGAAGTCAAAGTTGAAGTGGAAGAAGACAGAGTTTTGCAGATCAGTGGAGAGAGAAGCAAAGAGCAAGAAGAGAAGAACGACAAATGGCATAGAATGGAAAGAAGCAATGGGAAGTTCATGAGGAGATTCAGGTTGCCGGAGAATGCAAAAGTCGAAGAGGTGAAAGCCAGCATGGAGAATGGAGTGCTGATTTTGATAGTGCGCAAAATGGAAGAGAAGAAGCCTAAAATCAAGTCAATTGTGTTAAGCCAGCCCATTAATTACTTCCTCTATTGTTTTGCTTTATATTTGGCTAAAATTTGGAGAGAACGAACCTGGAGTGTTTGA

Coding sequence (CDS)

ATGTGGGACTTTGGTCGCACTCCCAACACAATAACCATGTCGCTTATTCCAAGCATTTTCGGTGGGCGACGGAGCAACATCTTCAACCCCTTGGAAGGCTTCCCATTTTCAAACTCACTGGGCAATGTTCCTTCCTCTGCTCGCGAGACCTCTGTTTTTGCCAACACTCGAATCGACTGGAAAGAGACCCCAGAAGCTCACATCTTCAAAGCCGATCTTCCCGAGATCAAAAAAGGGGAAGTCAAAGTTGAAGTGGAAGAAGACAGAGTTTTGCAGATCAGTGGAGAGAGAAGCAAAGAGCAAGAAGAGAAGAACGACAAATGGCATAGAATGGAAAGAAGCAATGGGAAGTTCATGAGGAGATTCAGGTTGCCGGAGAATGCAAAAGTCGAAGAGGTGAAAGCCAGCATGGAGAATGGAGTGCTGATTTTGATAGTGCGCAAAATGGAAGAGAAGAAGCCTAAAATCAAGTCAATTGTGTTAAGCCAGCCCATTAATTACTTCCTCTATTGTTTTGCTTTATATTTGGCTAAAATTTGGAGAGAACGAACCTGGAGTGTTTGA

Protein sequence

MWDFGRTPNTITMSLIPSIFGGRRSNIFNPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETPEAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRLPENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLSQPINYFLYCFALYLAKIWRERTWSV

Homology

[Close]

BLAST of Lag0040871 vs. NCBI nr
Match: XP_038891780.1 (17.8 kDa class I heat shock protein-like [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 8.9e-61
Identity = 131/158 (82.91%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           M+LIPSIFGGR SN+F        +P EGFPFS SL NVPSSARETSVFANTRIDWKETP
Sbjct: 1   MALIPSIFGGRLSNVFDPFSLDIWDPFEGFPFSTSLANVPSSARETSVFANTRIDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           EAHIFKADLP IKK EVKVEVEE RVLQISGERSKEQEEKNDKWHR+ERS+GKFMRRFRL
Sbjct: 61  EAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAKVEEVKASMENGVL + V KMEEKKP+IKSI +S
Sbjct: 121 PENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lag0040871 vs. NCBI nr
Match: KAA0037328.1 (18.1 kDa class I heat shock protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-60
Identity = 129/162 (79.63%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           M+LIPSIF GRRSN+F        +P EGFPFSNSL N+PSSARETS FANTRIDWKETP
Sbjct: 1   MALIPSIFDGRRSNVFDPFSLDIWDPFEGFPFSNSLANLPSSARETSAFANTRIDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           +AHIFKADLP I K EVKVEVEE RVLQISGERSKEQEEKNDKWHR+ERS+GKFMRRFRL
Sbjct: 61  QAHIFKADLPGINKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLSQPIN 167
           PENAKVEEVKASMENGVL + V KMEEKKP+IKSI +S  +N
Sbjct: 121 PENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISGKVN 162

[Close]

BLAST of Lag0040871 vs. NCBI nr
Match: XP_038892901.1 (18.1 kDa class I heat shock protein-like [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           M+LIPSIFGGRRSN+F        +P EGFPFS+SL N+PSSARETS FANTRIDWKETP
Sbjct: 1   MALIPSIFGGRRSNVFDPFSLDIWDPFEGFPFSSSLANIPSSARETSAFANTRIDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           EAHIFKADLP IKK EVKVEVEE RVLQISGERSKEQEEKNDKWHR+ERS+GKFMRRFRL
Sbjct: 61  EAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAKVEEVKA+MENGVL + V KMEEKKP+IK+I +S
Sbjct: 121 PENAKVEEVKANMENGVLTVTVPKMEEKKPEIKTIDIS 158

[Close]

BLAST of Lag0040871 vs. NCBI nr
Match: XP_004150235.2 (18.1 kDa class I heat shock protein [Cucumis sativus] >KGN50620.1 hypothetical protein Csa_021481 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 2.6e-60
Identity = 128/155 (82.58%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           M+L+PSIFGGRRSN+F        +P EGFPFSNSL N PSSARETS FANTRIDWKETP
Sbjct: 1   MALVPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNSLANAPSSARETSAFANTRIDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           +AHIFKADLP IKK EVKVEVEE RVLQISGERSKEQEEKNDKWHR+ERS GKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSI 160
           PENAKVEEVKASMENGVL ++V KMEEKKP+IKSI
Sbjct: 121 PENAKVEEVKASMENGVLTVMVPKMEEKKPEIKSI 155

[Close]

BLAST of Lag0040871 vs. NCBI nr
Match: KAA0051547.1 (17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa] >TYK21276.1 17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 7.6e-60
Identity = 127/158 (80.38%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           M+LIP+IFGGRRSN+F        +P EGFPFSNSL N+PSSAR+TS FANTRIDWKETP
Sbjct: 1   MALIPTIFGGRRSNVFDPFSLDIWDPFEGFPFSNSLANLPSSARDTSAFANTRIDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           +AHIFKADLP I K EVKVEVEE RVLQISGERSKEQEEKNDKWHR+ERS+GKFMRRFRL
Sbjct: 61  QAHIFKADLPGINKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAKVEEVKASMENGVL + V KMEEKKP+IKSI +S
Sbjct: 121 PENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lag0040871 vs. ExPASy Swiss-Prot
Match: P19037 (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP18.1 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-51
Identity = 107/158 (67.72%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           MSLIPSIFGGRRSN+F        +P EGF   +S     S+AR+ + F N R+DWKETP
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           EAH+FKADLP +KK EVKVEVE+  VLQISGERSKE EEKNDKWHR+ER++GKFMRRFRL
Sbjct: 61  EAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAK+EEVKA+MENGVL ++V K  EKKP++KSI +S
Sbjct: 121 PENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDIS 158

[Close]

BLAST of Lag0040871 vs. ExPASy Swiss-Prot
Match: P27880 (18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.3e-50
Identity = 104/158 (65.82%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           MSLIPS FGGRRSN+F        +P + FPF+NS  +  S  RE S F +TR+DWKETP
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSA-SFPRENSAFVSTRVDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           EAH+FKADLP +KK EVKVE+E+DRVLQISGERS E+E+KND+WHR+ERS+GKFMRRFRL
Sbjct: 61  EAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAK+++VKA+MENGVL + V K E KKP++K+I +S
Sbjct: 121 PENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDIS 157

[Close]

BLAST of Lag0040871 vs. ExPASy Swiss-Prot
Match: P05478 (18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.6e-50
Identity = 101/160 (63.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNV--PSSARETSVFANTRIDWKE 72
           MSLIP+ FGGRR+N+F        +P + FPF N+L +   P  +RE S F +TR+DWKE
Sbjct: 1   MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKE 60

Query: 73  TPEAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRF 132
           TPEAH+FKAD+P +KK EVKV++E+D+VLQISGER+ E+E+KND WHR+ERS+GKFMRRF
Sbjct: 61  TPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRF 120

Query: 133 RLPENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           RLPENAKVE+VKASMENGVL + V K E KKP +K+I +S
Sbjct: 121 RLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEIS 160

[Close]

BLAST of Lag0040871 vs. ExPASy Swiss-Prot
Match: P19243 (18.1 kDa class I heat shock protein OS=Pisum sativum OX=3888 GN=HSP18.1 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.7e-49
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSNIF--------NPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           MSLIPS F GRRSN+F        +PL+ FPFSNS  +  S  RE   F +TR+DWKETP
Sbjct: 1   MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSA-SFPRENPAFVSTRVDWKETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           EAH+FKADLP +KK EVKVEVE+DRVLQISGERS E+E+KND+WHR+ERS+GKF+RRFRL
Sbjct: 61  EAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAK+++VKASMENGVL + V K E KK ++KSI +S
Sbjct: 121 PENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEIS 157

[Close]

BLAST of Lag0040871 vs. ExPASy Swiss-Prot
Match: P13853 (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 8.2e-49
Identity = 101/158 (63.92%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 13  MSLIPSIFGGRRSN--------IFNPLEGFPFSNSLGNVPSSARETSVFANTRIDWKETP 72
           MSLIPSIFGGRR+N        +F+P EGF   + L N P  A + + F N ++DW+ETP
Sbjct: 1   MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETP 60

Query: 73  EAHIFKADLPEIKKGEVKVEVEEDRVLQISGERSKEQEEKNDKWHRMERSNGKFMRRFRL 132
           EAH+FKADLP ++K EVKVEVE+  +LQISGERS E EEKNDKWHR+ERS+GKF RRFRL
Sbjct: 61  EAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRL 120

Query: 133 PENAKVEEVKASMENGVLILIVRKMEEKKPKIKSIVLS 163
           PENAK+EE+KASMENGVL + V K+ EKKP++KSI +S
Sbjct: 121 PENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDIS 156

The following BLAST results are available for this feature:

BLAST of Lag0040871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891780.1	8.9e-61	82.91	17.8 kDa class I heat shock protein-like [Benincasa hispida]	[more]
KAA0037328.1	1.5e-60	79.63	18.1 kDa class I heat shock protein-like [Cucumis melo var. makuwa]	[more]
XP_038892901.1	2.0e-60	81.01	18.1 kDa class I heat shock protein-like [Benincasa hispida]	[more]
XP_004150235.2	2.6e-60	82.58	18.1 kDa class I heat shock protein [Cucumis sativus] >KGN50620.1 hypothetical p...	[more]
KAA0051547.1	7.6e-60	80.38	17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa] >TYK21276.1 ...	[more]

BLAST of Lag0040871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19037	3.0e-51	67.72	18.1 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP18.1 P...	[more]
P27880	4.3e-50	65.82	18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 S...	[more]
P05478	9.6e-50	63.13	18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=...	[more]
P19243	3.7e-49	66.46	18.1 kDa class I heat shock protein OS=Pisum sativum OX=3888 GN=HSP18.1 PE=1 SV=...	[more]
P13853	8.2e-49	63.92	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 22..161 e-value: 2.3E-42 score: 146.2
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 38..159
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 59..159 e-value: 1.9E-26 score: 92.2
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 49..164 score: 27.205805
None	No IPR available	PANTHER	PTHR11527:SF325	17.8 KDA CLASS I HEAT SHOCK PROTEIN-LIKE	coord: 13..161
None	No IPR available	CDD	cd06472	ACD_ScHsp26_like	coord: 57..148 e-value: 2.79849E-51 score: 157.852
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	HEAT-SHOCK PROTEIN 20 FAMILY MEMBER	coord: 13..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040871.1	Lag0040871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051259	protein complex oligomerization
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009651	response to salt stress
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0051082	unfolded protein binding