Lag0040088 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040088
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUbiquitin-conjugating enzyme
Locationchr13: 2072339 .. 2076468 (+)
RNA-Seq ExpressionLag0040088
SyntenyLag0040088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACTCCTGCGAGGAAGAGACTGATGAGAGACTTCAAGAGGTTGCAACAAGATCCACCTGCTGGCATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGTTGGACCTTTTTCTTTTTTCTTATCAGAATTTGTATACATATCCATCATTGCATACTTACTGATGATATGGTATTTTACATTTTTTTTGTTGGCTTTTGCAGGCCAGATGATACACCTTGGGATGGAGGTATTCTCAATTTCTGGGCCTAAATGACTTAATAAGAAGACTGCAGTGTTGTGTTTAGGATCAAGTCTTCTAATGATTTACTTATTCCTTGTTTGATGATTTCACTTGGTTTTTCTGTCCAAAACTATAATTAATAAATACTGTTGATGCTTTTTACTGCAATACATATAATAGTATTTTCACTTCTCTCAATTATGTAGATGTATATTTGGCTATATTATACTGTTAAATTAATTTGTTGGTTTACAAATCATCTGGCACTGATTTGCATGATATTTTGTATTTCATGTTTCTTGGTCTTCTTCCTAAGCTCTGTCCGCTATTTGGATATGGGGTGTGCTGTATTTTCTGGTGGAAAACTCGAGAATAATTAGAGCTTGCTAAAATTCTGATTATTGTTTCCTCAGGACTTTAGATTTGTAATGTCAAGTTGCTTTCATCTCTCCTAGTGCAAGTTATGGATGTGTACTCTGAAGGATCCATGCATTCTGCTGTTCTTTTCTAAACGTGTGGTTATATTGAATTGGATATTAGCATCTTGTTTGATTTTCTGAAAATTTCAATTAATTTTGTATTTGATTTTGATAGTTTCTTAATTAAGCATATTTTTATGCGAACCTCTCATGTAGTTTATGATTTATATTCTATAATTTGGTTACCATTTCTTTGAGTTAACCAGGTACGTTTAAACTGACCCTTCAGTTCACCGAGGATTATCCAAATAAGCCACCAACTGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACAGTAAGTTACTTTATGTGCTTCGTTCTTGGTCAATTTGAGGGCTTTTTGTAATCTTGGTTTCGTTAGGTTTTAAGAGGATGTCTAGTTCTACAGTAAGTTTTTAGCCCTACTATTTTTTGTTAACACAATTTTGCTTAATGTGTGTGTTTTGGTGCTTTGCTAATTTTCTTTTGCTAAGAAATTTAAAAAGAAAAGAAAAACATCTGTTAACACTGTTGTGTCTGCTTCATCAAACCTTTATGAATCCTATCCGCTATGTTTGATATGTATGGTATGTTTGGCTTGGACATGGGTGGGTGATTTTAACGAGTGAAAAGCAAGAGAAAAAGAGTATGAGTCATCTTGTAAAACAATAAAGTAAATATTTATCTTAGGTTGCAATGTATGTTACGACGATTTTGTTTTTAAATTCTTTCCTATATATTTTGCTAACCTTTTGTGCTCATATGTCTTTTGTGATCGCCTACAGTTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAACCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCAATTCAGGTACCACCTAATTAATTTGCTTTAATGTATGACAAGATTGAAAGTTTTTCTTGCTATATAATTAATAGCGTCCTTTTATCCTTTTATGGGATGAAATGTAAGTAATCAGAGTCTTTAAAAGAAACATATCATTTCTTCTGTATTGTGCCCTACTTTAGTAGTAGAATGCACAAGGTTCATGTGTCCTCAGATCGTATCATGTTTATTTAGTTAGCTGGGTGAGCATGCAGTTAGTAGTAAACCTGTACTGCCCGCTGATCCATCACCCATGCCTTAAAAGCCCCATTCTTTTAGTTCTTGTCCTTGCTCTCTGAATTAGTGACATATGATAGGTTTGATTCACTCACCTTATTTTTTTTTTAAGAAATATTGAAGTATATAAAATGTTCTTGAACTTTAGGGTAGGTTTTAATTATCTCCCTATCGTTTTAAAAGTTACATTTTTACCCAACCTTTAAAATTGTTTCAAAACAACCCCTGACTCCTGAGTAAACCTTTTTGTTAAAATGAACACAAAAATATGAAATAGTGGTGCGTTGCAAAAATAGAGTAGATATGATCACAAGTGGTAGATTTCAATTGTGCTTCTAGAATTTGGGATAAGTTTCAATGATTCTCCTATTTTTTCGAAGTTATATTTTAACTCTTAACCTTTAAAATTGTTTCAAAACGACAATGCTTCAACTTTCTAATTAAAATGAAGACACAAATATTTACGTGACAGTGAGCGGTAAAAAATTTAAAGGTTTTAGCTACATCCGAATTTTAGTTAAAATGGCGTCCTTGACTCATTTACATGGGGAAGCTACACAGTGTGAGAAAAGTCACACATTAGTAAAATTGATCAGTCTTATTAATTGTGAAAAGCCACACACTGGAAAATTTGAAAGAGTAGAGTTGAGGGAGAAAGCTTCGTGAGAGGAATATGTTTGTGAGAAAAAAAATGGTAGAACCACAAAAATGATTGATAGATGGAGGATGTCAATTTTATCCCCCAAAAGAAAGAAATTTTTTGAGCCATAATGGTCCTTGGGTTTGGTTGGCTAGGGATTCTTTGTTTTACTCTTTCTTTTTCATGCCCTAATTTTATCTTTCATCCATTAGTCGTGAGAGGGAGACCCTAAATTTTGTTTGGTGTTCGTGCTTTGCTTATCCTTTTGGAAATTTATTTCCCCCCAAACCTTTTGATAGTGAAAGGAGGAACAATATTTTATCATAACCCCAATTTTTAATTTTTTTTTAATTTTTTTTATTATATTTTAAAGAAACCACACCTAAATTGAGAAAAAAAAAATGAAAGAATGCAGGAGGGCATACAAAAAACAAGCCCACCAAAAAACACCTGCCGAAATTACAAGAACGGGTCCCAATCCAAAAGAAAAAAACCTAGTTGATAATTACAAAAGAGCTTAGAAACCGAAGCCCACAGAGACACGTTAAACCTAATCGTCTCTCACAGCTCATTCATGGATTTCTCCACCCCTCTAAAAATTCTACTGTTCCTCTCGAGTCAAGTACCCCAATTTTTTTTTTTTTGATAATTTGTGGGGTGGGGGGATTCGAACCATAGACCTCTTGGTCATTAATACAAACTTTATTCCAATTGAGCTATGCTCATGTTGGCGTACCTCAAATTTGTTTCCCCCTAAAAAGGCACCATGTTGAATGTGACTTAGATCCTTTGATTTTTTTATAGTTCATTGCCATGTCATATTTCTATTTTCATTTTAGTTGGAAAGCTAATGAAAAGATAGTTCTGAACAATTTTAAAAGAGTGAAAATGAGATTTTTGAAACGATAAGATTTAGGGCATAATTAGAACTTACTCTAAGTTCAAAGATAAAATTGAAACTATCTATGCCAATATATACGTTGTTATTACAAGACACCACCATGTCGCCTGTCCTCTTTTATTTTAAAAGAGACCAAAGGTTGTTTTGAAACATTAAAAGTGAAGGATATAAATACAACTTGAAATTATTTAAGACCAAATTTATATGACCGGAAGAATGTAATTTGCTGAATAATCTGATTGGAAATCGACCTTCATAAGAAAGTGCGGCCATTGTTGTCGATTATCAATATAATTTTCTTAACGATAATCATATATACCAAGAATGTTCCACACAAGTATCTTGCCTACCAAAAAAGGGAAAACGAAGTTGAAGGTACCGAGATAATGAATTACCTGCCATTTTTTTCTTCTTATTATTTTTTTTTTTACTTTTTATGGAGAATGCGCAAATATTGACAAAATTAGAGAAATGACTTTTAGGATTTAAAATGTTAAATGGCTCTCTTGTGCTTTTCATTGATTTGCAAACTCGCTTCCTTCTTGGTGCTGTTGCTGCTGCTGTTGGGGTTTTTTTTTTCATAAATTTTGCCAGTAGTTTTTATACCATAAATGGTTTCCTTTGCAGTCGTTGCTGTGCGACCCCAATCCAAACTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAAAATAAGCGTGAGTACAACAGGAGAGTACGTGAAATTGTGGAACAGAGCTGGACTGCAGATTAG

mRNA sequence

ATGTCTACTCCTGCGAGGAAGAGACTGATGAGAGACTTCAAGAGGTTGCAACAAGATCCACCTGCTGGCATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAACTGACCCTTCAGTTCACCGAGGATTATCCAAATAAGCCACCAACTGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAACCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCAATTCAGTCGTTGCTGTGCGACCCCAATCCAAACTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAAAATAAGCGTGAGTACAACAGGAGAGTACGTGAAATTGTGGAACAGAGCTGGACTGCAGATTAG

Coding sequence (CDS)

ATGTCTACTCCTGCGAGGAAGAGACTGATGAGAGACTTCAAGAGGTTGCAACAAGATCCACCTGCTGGCATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAACTGACCCTTCAGTTCACCGAGGATTATCCAAATAAGCCACCAACTGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAACCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCAATTCAGTCGTTGCTGTGCGACCCCAATCCAAACTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAAAATAAGCGTGAGTACAACAGGAGAGTACGTGAAATTGTGGAACAGAGCTGGACTGCAGATTAG

Protein sequence

MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Homology
[Close]
BLAST of Lag0040088 vs. NCBI nr
Match: KAF3966055.1 (hypothetical protein CMV_009812 [Castanea mollissima])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 38  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 97

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 98  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 157

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 158 PANSEAARMFSENKREYNRRVREIVEQSWTAD 189

[Close]
BLAST of Lag0040088 vs. NCBI nr
Match: KAA0034394.1 (ubiquitin-conjugating enzyme [Cucumis melo var. makuwa] >TYK15527.1 ubiquitin-conjugating enzyme [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 5   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 64

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 65  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 124

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 125 PANSEAARMFSENKREYNRRVREIVEQSWTAD 156

[Close]
BLAST of Lag0040088 vs. NCBI nr
Match: XP_016736213.1 (ubiquitin-conjugating enzyme E2 2 [Gossypium hirsutum])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 27  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 86

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 87  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 146

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 147 PANSEAARMFSENKREYNRRVREIVEQSWTAD 178

[Close]
BLAST of Lag0040088 vs. NCBI nr
Match: CAB4280943.1 (unnamed protein product [Prunus armeniaca] >CAB4311352.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 16  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 75

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 76  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 135

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 136 PANSEAARMFSENKREYNRRVREIVEQSWTAD 167

[Close]
BLAST of Lag0040088 vs. NCBI nr
Match: RDX92411.1 (Ubiquitin-conjugating enzyme E2 2 [Mucuna pruriens])

HSP 1 Score: 320.1 bits (819), Expect = 1.0e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 15  MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 74

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 75  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 134

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 135 PANSEAARMFSENKREYNRRVREIVEQSWTAD 166

[Close]
BLAST of Lag0040088 vs. ExPASy Swiss-Prot
Match: P42745 (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 5.7e-85
Identity = 148/152 (97.37%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSESKREYNRRVREVVEQSWTAD 152

[Close]
BLAST of Lag0040088 vs. ExPASy Swiss-Prot
Match: P35130 (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 5.7e-85
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQ DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARMFSENKREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSENKREYNRRVREVVEQSWTAD 152

[Close]
BLAST of Lag0040088 vs. ExPASy Swiss-Prot
Match: P25866 (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.7e-84
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAP DNNI LWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFT 60

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARM+SENKREYNR+VRE+VEQSWTAD
Sbjct: 121 PANSEAARMYSENKREYNRKVREVVEQSWTAD 152

[Close]
BLAST of Lag0040088 vs. ExPASy Swiss-Prot
Match: P25865 (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 2.8e-84
Identity = 146/152 (96.05%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 153
           PANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct: 121 PANSEAARMYSESKREYNRRVRDVVEQSWTAD 152

[Close]
BLAST of Lag0040088 vs. ExPASy Swiss-Prot
Match: P42746 (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana OX=3702 GN=UBC3 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-75
Identity = 132/149 (88.59%), Postives = 143/149 (95.97%), Query Frame = 0 

Query: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
           M+TPA+KRLM DFKRLQ+DPP GISGAPQDNNIM WNA+IFGP+DTPWDGGTFKLTL FT
Sbjct: 1   MTTPAKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFT 60

Query: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
           EDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+S
Sbjct: 61  EDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDS 120

Query: 121 PANSEAARMFSENKREYNRRVREIVEQSW 150
           PAN+EAAR+FSENKREYNR+V EIVEQS+
Sbjct: 121 PANAEAARLFSENKREYNRKVIEIVEQSY 149

The following BLAST results are available for this feature:
BLAST of Lag0040088 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3966055.11.0e-83100.00hypothetical protein CMV_009812 [Castanea mollissima][more]
KAA0034394.11.0e-83100.00ubiquitin-conjugating enzyme [Cucumis melo var. makuwa] >TYK15527.1 ubiquitin-co... [more]
XP_016736213.11.0e-83100.00ubiquitin-conjugating enzyme E2 2 [Gossypium hirsutum][more]
CAB4280943.11.0e-83100.00unnamed protein product [Prunus armeniaca] >CAB4311352.1 unnamed protein product... [more]
RDX92411.11.0e-83100.00Ubiquitin-conjugating enzyme E2 2 [Mucuna pruriens][more]
BLAST of Lag0040088 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427455.7e-8597.37Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 S... [more]
P351305.7e-8597.37Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1[more]
P258661.7e-8496.71Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1[more]
P258652.8e-8496.05Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 S... [more]
P427461.1e-7588.59Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana OX=3702 GN=UBC3 PE=2 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 7..150
e-value: 5.4E-69
score: 245.2
NoneNo IPR availablePANTHERPTHR24067:SF319UBIQUITIN-CONJUGATING ENZYME E2 2coord: 1..152
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 1..152
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 8..144
e-value: 8.5E-53
score: 177.8
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 4..150
score: 60.566891
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 7..145
e-value: 5.9055E-75
score: 218.226
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 1..148
e-value: 6.5E-68
score: 229.2
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 1..150
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBC_1coord: 77..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040088.1Lag0040088.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0016574 histone ubiquitination
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
molecular_function GO:0005524 ATP binding
molecular_function GO:0061631 ubiquitin conjugating enzyme activity