Lag0039698 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039698
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr2: 48511344 .. 48511655 (+)
RNA-Seq ExpressionLag0039698
SyntenyLag0039698
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGCCTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGGTAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG

mRNA sequence

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGCCTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGGTAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG

Coding sequence (CDS)

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGCCTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGGTAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG

Protein sequence

MADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR
Homology
[Close]
BLAST of Lag0039698 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-27
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

[Close]
BLAST of Lag0039698 vs. NCBI nr
Match: KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           +QRQ+   +   MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAIL
Sbjct: 16  AQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LR   GL  TEIVD+EEMVAMFLH++AHDVKNRVI+R
Sbjct: 76  CHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQR 115

[Close]
BLAST of Lag0039698 vs. NCBI nr
Match: KAA0047510.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 0 

Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CRESTRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRESTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

[Close]
BLAST of Lag0039698 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 0 

Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

[Close]
BLAST of Lag0039698 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 0 

Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

The following BLAST results are available for this feature:
BLAST of Lag0039698 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065736.12.7e-2767.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058874.17.9e-2764.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047510.17.9e-2767.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065286.11.8e-2666.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048361.11.8e-2666.00retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lag0039698 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 25..102
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 25..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039698.1Lag0039698.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding