Lag0039698 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039698
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon protein
Location	chr2: 48511344 .. 48511655 (+)
RNA-Seq Expression	Lag0039698
Synteny	Lag0039698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGCCTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGGTAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG

mRNA sequence

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGCCTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGGTAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG

Coding sequence (CDS)

ATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTTCTTCATGAACAACCACCGTAGGATAGAAAACCAATCTCCCTACATCAGACACCAGATAAGGCAACTAGCCTGCTTCCGGTTGATCCATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTTTGCCATACTATGTAGTATGCTGAGAACGACTTTCGGGTTGGTAGGAACGGAAATCGTAGACATGGAAGAGATGGTCGCAATGTTCTTGCACATCGTTGCTCACGATGTTAAGAATCGAGTCATAAGAAGATAG

Protein sequence

MADSQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR

Homology

[Close]

BLAST of Lag0039698 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-27
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

[Close]

BLAST of Lag0039698 vs. NCBI nr
Match: KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           +QRQ+   +   MNN++R+ +  P  RH+IR+LA FR+IHESDL CR+STRMDRR FAIL
Sbjct: 16  AQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLVCRQSTRMDRRTFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LR   GL  TEIVD+EEMVAMFLH++AHDVKNRVI+R
Sbjct: 76  CHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQR 115

[Close]

BLAST of Lag0039698 vs. NCBI nr
Match: KAA0047510.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CRESTRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRESTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

[Close]

BLAST of Lag0039698 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

[Close]

BLAST of Lag0039698 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 4   SQRQLFNLINFFMNNHRRIENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAIL 63
           SQRQL  ++    N+ +RI +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAIL
Sbjct: 16  SQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMDRRCFAIL 75

Query: 64  CSMLRTTFGLVGTEIVDMEEMVAMFLHIVAHDVKNRVIRR 104
           C +LRT  GL  TE+VD+EEMVAMFLHI+AHDVKNRVI+R
Sbjct: 76  CHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQR 115

The following BLAST results are available for this feature:

BLAST of Lag0039698 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065736.1	2.7e-27	67.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058874.1	7.9e-27	64.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047510.1	7.9e-27	67.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065286.1	1.8e-26	66.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	1.8e-26	66.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0039698 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 25..102
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 25..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039698.1	Lag0039698.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding