Lag0039422 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039422
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 43428524 .. 43428853 (-)
RNA-Seq ExpressionLag0039422
SyntenyLag0039422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGCAGATCAATATGCGATGGATCTGGGTTTTACTTCGGTGAATTGCTCCAAGAACCAGAAATGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCTCTGAGGCCATCAGCCTCTCTCATACTACCTACTGCGTAACTCAAATGAGACCTTTAGTCTCTCCTTCTACACCGTCTTCATCTCAACAGGGATCTTCAATCCCCACAACCTTTGTCGATGCAGTCAATCCACCAAAAAGATTCGTTCCAAAACCCGAAATAAAAACTTATTTTGAAAAACCTTCCAATTTCAGAACCAATAGTCGAACCCGAATTTGA

mRNA sequence

ATGAGCGCAGATCAATATGCGATGGATCTGGGTTTTACTTCGGTGAATTGCTCCAAGAACCAGAAATGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCTCTGAGGCCATCAGCCTCTCTCATACTACCTACTGCGTAACTCAAATGAGACCTTTAGTCTCTCCTTCTACACCGTCTTCATCTCAACAGGGATCTTCAATCCCCACAACCTTTGTCGATGCAGTCAATCCACCAAAAAGATTCGTTCCAAAACCCGAAATAAAAACTTATTTTGAAAAACCTTCCAATTTCAGAACCAATAGTCGAACCCGAATTTGA

Coding sequence (CDS)

ATGAGCGCAGATCAATATGCGATGGATCTGGGTTTTACTTCGGTGAATTGCTCCAAGAACCAGAAATGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACCTCTGAGGCCATCAGCCTCTCTCATACTACCTACTGCGTAACTCAAATGAGACCTTTAGTCTCTCCTTCTACACCGTCTTCATCTCAACAGGGATCTTCAATCCCCACAACCTTTGTCGATGCAGTCAATCCACCAAAAAGATTCGTTCCAAAACCCGAAATAAAAACTTATTTTGAAAAACCTTCCAATTTCAGAACCAATAGTCGAACCCGAATTTGA

Protein sequence

MSADQYAMDLGFTSVNCSKNQKCIDSNKRFNGVINSTSEAISLSHTTYCVTQMRPLVSPSTPSSSQQGSSIPTTFVDAVNPPKRFVPKPEIKTYFEKPSNFRTNSRTRI
Homology
BLAST of Lag0039422 vs. NCBI nr
Match: KAA0066384.1 (hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK00900.1 hypothetical protein E5676_scaffold602G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = 0

Query: 3   ADQYAMDLGFTSVNCSKNQKCIDSNKRFNGVINSTS---EAISLSHTTYCVTQMRPLVSP 62
           ADQYAM++GFT+V  S+++    SN R   +  ST+    +++L H +  V QMRP   P
Sbjct: 35  ADQYAMEVGFTTVTRSRSR---SSNIRIGSLTESTTPPRPSVNLIHPSSGVVQMRP---P 94

Query: 63  STPSSSQQGSSIPTTFVDAVNPPKRFVPKPEIKTYFEK 98
           ++PSS+++ S+  TT+  AV P KRFVP+PEIK+YF+K
Sbjct: 95  ASPSSNRESSTPSTTYSQAVTPDKRFVPRPEIKSYFQK 126

BLAST of Lag0039422 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 0

Query: 1   MSADQYAMDLGFTSVNCSKNQKCIDSNKRFNGVINSTSE-------AISLSHTTYCVTQM 60
           +SADQYAMDLGFT+V           ++ F   I S +E       + +L   +  V QM
Sbjct: 33  LSADQYAMDLGFTTVTRF-------ISRSFGIWIGSPTESSTPPRPSTNLIRPSSGVVQM 92

Query: 61  RPLVSPSTPSSSQQGSSIPTTFVDAVNPPKRFVPKPEIKTYFEKP 99
           RP   P++PSS+++ S+ PTT+  AV P KRFVP+PEIK+YF+KP
Sbjct: 93  RP---PASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKP 127

BLAST of Lag0039422 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 1   MSADQYAMDLGFTSVNCSKNQKCIDSNKRFNGVINSTSEAISLSHTTYCVTQMRPLVSPS 60
           MSADQY MDLGFT+V  S+++      +             +L   +  V QMRP   P+
Sbjct: 33  MSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTPPRPLANLIRPSGRVVQMRP---PA 92

Query: 61  TPSSSQQGSSIPTTFVDAVNPPKRFVPKPEIKTYFEKP 99
           +PSS+++ S+ PTT+  AV P KRFVP+P+IK+YF+KP
Sbjct: 93  SPSSNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQKP 127

BLAST of Lag0039422 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 1  MSADQYAMDLGFTSVNCSKNQKCIDSNKRFNGVINSTS---EAISLSHTTYCVTQMRPLV 60
          MSADQYAMDLGFT+V  S+++    S+ R      S++    + +L        QMRP  
Sbjct: 1  MSADQYAMDLGFTTVTRSRSR---SSSIRIESSTESSTPPRPSANLIRPFGGAVQMRP-- 60

Query: 61 SPSTPSSSQQGSSIPTTFVDAVNPPKRFVPKPEIKTYFEK 98
           P++PSS+++ S+ PTT+   V P KRFVP+PEIK+YF+K
Sbjct: 61 -PASPSSNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQK 94

BLAST of Lag0039422 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 1   MSADQYAMDLGFTSVNCSKNQKCIDSNKRFNGVINSTS---EAISLSHTTYCVTQMRPLV 60
           M++DQYAMDL FT+V  S+++    S+ R      S++      +L   +  V QMRP  
Sbjct: 33  MNSDQYAMDLEFTTVTRSRSR---SSSIRTGSPTESSTPPRPLANLIRPSGGVVQMRP-- 92

Query: 61  SPSTPSSSQQGSSIPTTFVDAVNPPKRFVPKPEIKTYFEKP 99
            P++PSS+++ S+ PTT+  AV P KRFVP+P+IK+YF+KP
Sbjct: 93  -PTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQKP 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066384.11.1e-1045.92hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK0090... [more]
KAA0043136.12.1e-0944.76putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative... [more]
TYK11076.12.1e-0943.88hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa][more]
KAA0066421.13.5e-0945.00hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086... [more]
KAA0056175.11.0e-0843.56hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039422.1Lag0039422.1mRNA