Lag0039361 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039361
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	mitochondrial outer membrane protein porin 2-like
Location	chr2: 42155930 .. 42156428 (+)
RNA-Seq Expression	Lag0039361
Synteny	Lag0039361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCAGCACAGGGGAGGTTTTTACACAGGGGATGTGGCAGCACAGTACAAGCATAACAATGTTGTTCTTGATTTCAAATTGGACACAGAATCAAATGTAGTTGACCATTGTCTTCATTTTTTGATAATGATTTATATGGGTATTCTTTACACTTTCATCATTCATGCAGGTCTCCTCACTCCTCACAGTTACAGATATTCTGCCATCCACGTATGTCATTGCTTCATTGAGGCTCCCAGATTACAACTCTGACAAGGTAATGTTTCAAAGTAGACTTGAGATGAGTCAATATTTATGATTTTCCCTATAAATTGCAAGTTCCGCAACCTTTGAGATTTAATATCTGCAAATTCATTTGTTGCAGCTGGAGGTTCAATATTTCCACGAGCATGCTACATTTGCTACAGCCTTTGCTTTGAATAAGTCTCCTTCAATTGATATTTCAGCAACCATTGGCACACCCACATTTCTTTTGGAGCGGAAGCTAGTTATTTAA

mRNA sequence

ATGTGGCAGCACAGGGGAGGTTTTTACACAGGGGATGTGGCAGCACAGTACAAGCATAACAATGTTGTTCTTGATTTCAAATTGGACACAGAATCAAATGTCTCCTCACTCCTCACAGTTACAGATATTCTGCCATCCACGTATGTCATTGCTTCATTGAGGCTCCCAGATTACAACTCTGACAAGCTGGAGGTTCAATATTTCCACGAGCATGCTACATTTGCTACAGCCTTTGCTTTGAATAAGTCTCCTTCAATTGATATTTCAGCAACCATTGGCACACCCACATTTCTTTTGGAGCGGAAGCTAGTTATTTAA

Coding sequence (CDS)

ATGTGGCAGCACAGGGGAGGTTTTTACACAGGGGATGTGGCAGCACAGTACAAGCATAACAATGTTGTTCTTGATTTCAAATTGGACACAGAATCAAATGTCTCCTCACTCCTCACAGTTACAGATATTCTGCCATCCACGTATGTCATTGCTTCATTGAGGCTCCCAGATTACAACTCTGACAAGCTGGAGGTTCAATATTTCCACGAGCATGCTACATTTGCTACAGCCTTTGCTTTGAATAAGTCTCCTTCAATTGATATTTCAGCAACCATTGGCACACCCACATTTCTTTTGGAGCGGAAGCTAGTTATTTAA

Protein sequence

MWQHRGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLEVQYFHEHATFATAFALNKSPSIDISATIGTPTFLLERKLVI

Homology

[Close]

BLAST of Lag0039361 vs. NCBI nr
Match: XP_022140250.1 (mitochondrial outer membrane protein porin 2-like [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           RGG YTGDVAAQYKH N V+DFK DTESNVSS+LTVTDILPST+VIASLRLPDYNS K+E
Sbjct: 49  RGGLYTGDVAAQYKHKNAVVDFKFDTESNVSSVLTVTDILPSTHVIASLRLPDYNSGKVE 108

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGTP 96
           VQYFHEHATFATAFALNKSPS+DISATIGTP
Sbjct: 109 VQYFHEHATFATAFALNKSPSVDISATIGTP 139

[Close]

BLAST of Lag0039361 vs. NCBI nr
Match: XP_022941019.1 (mitochondrial outer membrane protein porin 2-like [Cucurbita moschata])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           RGG YTGDVAAQYKH N VLDFK DTESN+SS+LTVTDILPST+VIASLRLPDYNS KLE
Sbjct: 49  RGGLYTGDVAAQYKHKNSVLDFKFDTESNISSVLTVTDILPSTHVIASLRLPDYNSGKLE 108

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGTP 96
           VQ+FHEHATF TAF+LNKSPS+DISAT+GTP
Sbjct: 109 VQHFHEHATFTTAFSLNKSPSVDISATLGTP 139

[Close]

BLAST of Lag0039361 vs. NCBI nr
Match: KAG7037762.1 (Mitochondrial outer membrane protein porin 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           RGG YTGDVAAQYKH N VLDFK DTESN+SS+LTVTDILPST+VIASLRLPDYNS KLE
Sbjct: 49  RGGLYTGDVAAQYKHKNSVLDFKFDTESNISSVLTVTDILPSTHVIASLRLPDYNSGKLE 108

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGTP 96
           VQ+FHEHATF TAF+LNKSPS+DISAT+GTP
Sbjct: 109 VQHFHEHATFTTAFSLNKSPSVDISATLGTP 139

[Close]

BLAST of Lag0039361 vs. NCBI nr
Match: XP_023524333.1 (mitochondrial outer membrane protein porin 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 5.6e-36
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           RGG YTGDVAAQYKH N VLDFK DTESN+SS+LTVTDILPST VIASLRLPDYNS KLE
Sbjct: 49  RGGLYTGDVAAQYKHKNSVLDFKFDTESNISSVLTVTDILPSTNVIASLRLPDYNSGKLE 108

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGTP 96
           VQ+FHEHATF TAF+LNKSPS+DISAT+GTP
Sbjct: 109 VQHFHEHATFTTAFSLNKSPSVDISATLGTP 139

[Close]

BLAST of Lag0039361 vs. NCBI nr
Match: XP_022982432.1 (mitochondrial outer membrane protein porin 2-like [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 7.3e-36
Identity = 77/91 (84.62%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           RGG YTG+VAAQYKH N VLDFK DTESN+SS+LTVTDILPST+VIASLRLPDYNS KLE
Sbjct: 49  RGGLYTGNVAAQYKHKNSVLDFKFDTESNISSVLTVTDILPSTHVIASLRLPDYNSGKLE 108

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGTP 96
           VQ+FHEHATF TAF+LNKSPS+DISAT+GTP
Sbjct: 109 VQHFHEHATFTTAFSLNKSPSVDISATLGTP 139

[Close]

BLAST of Lag0039361 vs. ExPASy Swiss-Prot
Match: Q9FJX3 (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana OX=3702 GN=VDAC2 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-24
Identity = 52/91 (57.14%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           +GG +  DVA QYK+ N + D K+DT+S+V + +T+T+ILPST  IAS ++PDYNS KLE
Sbjct: 48  KGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLE 107

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGTP 96
           VQYFH+HAT   A AL ++P IDI+AT+G+P
Sbjct: 108 VQYFHDHATVTAAAALKQNPLIDITATLGSP 138

[Close]

BLAST of Lag0039361 vs. ExPASy Swiss-Prot
Match: Q84P97 (Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica OX=39947 GN=VDAC5 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 48/89 (53.93%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           +GG YT DV++ YK+ + ++D K+DTESN+S+ LTV D+LPST ++ S++LPDYNS K+E
Sbjct: 49  KGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVE 108

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIG 94
           +QYFHE+A+FATA  +  SP ++ S T G
Sbjct: 109 MQYFHENASFATAVGMKPSPVVEFSGTAG 137

[Close]

BLAST of Lag0039361 vs. ExPASy Swiss-Prot
Match: Q9FKM2 (Mitochondrial outer membrane protein porin 4 OS=Arabidopsis thaliana OX=3702 GN=VDAC4 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-17
Identity = 39/92 (42.39%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 8   FYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLEVQY 67
           F+ GD++  YK  N ++D K+D+ S+VS+ +T+ ++LPS   + S ++PD+ S KL+VQY
Sbjct: 51  FFFGDISTLYKGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQY 110

Query: 68  FHEHATFATAFALNKSPSIDISATIGTPTFLL 100
            H HAT  ++  LN +P +D+SATIG+    L
Sbjct: 111 VHPHATLNSSIGLNPTPLLDLSATIGSQNVCL 142

[Close]

BLAST of Lag0039361 vs. ExPASy Swiss-Prot
Match: Q9SMX3 (Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana OX=3702 GN=VDAC3 PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 4   HRGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKL 63
           ++G  + GDVA Q K+NN   D K+ T+S++ + LT  +  P   VI   +LPD+ S K 
Sbjct: 47  NKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKA 106

Query: 64  EVQYFHEHATFATAFALNKSPSIDISATIGT 95
           EVQYFH++A  +T+     +P ++ S  +GT
Sbjct: 107 EVQYFHDYAGISTSVGFTATPIVNFSGVVGT 137

[Close]

BLAST of Lag0039361 vs. ExPASy Swiss-Prot
Match: P42055 (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 5   RGGFYTGDVAAQYKHNNVVLDFKLDTESNVSSLLTVTDILPSTYVIASLRLPDYNSDKLE 64
           +G  +  DV  Q K+ NV  D K+DT SN+ + +TV +  P    I S R+PD  S KLE
Sbjct: 48  KGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLE 107

Query: 65  VQYFHEHATFATAFALNKSPSIDISATIGT 95
           VQY H++A   T+  L  +P ++ S  +GT
Sbjct: 108 VQYLHDYAGICTSVGLTANPIVNFSGVVGT 137

The following BLAST results are available for this feature:

BLAST of Lag0039361 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140250.1	1.0e-37	89.01	mitochondrial outer membrane protein porin 2-like [Momordica charantia]	[more]
XP_022941019.1	1.9e-36	85.71	mitochondrial outer membrane protein porin 2-like [Cucurbita moschata]	[more]
KAG7037762.1	1.9e-36	85.71	Mitochondrial outer membrane protein porin 2 [Cucurbita argyrosperma subsp. argy...	[more]
XP_023524333.1	5.6e-36	85.71	mitochondrial outer membrane protein porin 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982432.1	7.3e-36	84.62	mitochondrial outer membrane protein porin 2-like [Cucurbita maxima]	[more]

BLAST of Lag0039361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJX3	1.3e-24	57.14	Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q84P97	5.6e-23	53.93	Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica OX=...	[more]
Q9FKM2	3.5e-17	42.39	Mitochondrial outer membrane protein porin 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SMX3	1.4e-13	38.46	Mitochondrial outer membrane protein porin 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P42055	1.8e-13	40.00	Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum OX=411...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027246	Eukaryotic porin/Tom40	PFAM	PF01459	Porin_3	coord: 9..98 e-value: 9.9E-10 score: 38.3
IPR023614	Porin domain superfamily	GENE3D	2.40.160.10	Porin	coord: 3..105 e-value: 2.5E-14 score: 55.3
IPR001925	Porin, eukaryotic type	PANTHER	PTHR11743	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	coord: 4..97
None	No IPR available	PANTHER	PTHR11743:SF61	PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN	coord: 4..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039361.1	Lag0039361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098656	anion transmembrane transport
biological_process	GO:0015698	inorganic anion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005741	mitochondrial outer membrane
molecular_function	GO:0008308	voltage-gated anion channel activity