Lag0038023 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0038023
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSBP-type domain-containing protein
Locationchr2: 11700150 .. 11700653 (-)
RNA-Seq ExpressionLag0038023
SyntenyLag0038023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAGAAACTGCAATCTATCAAAGGTGGTGGAGGGTCTATTAAGGTTGGAGCCACCGGAACGATTAGCTCCCTGATGATGAGGGAGTTAGAGACAATGAGATCCGGCCCCCAGAAGTCGGTAACTTCCAAAAACAAATCTTCATCTGCTGCTACTGTTTCATCTGCTGCTTCTGTTCCTAAAAGACTACAACAAAGTAAATCATTTGATGAGGTAAACAATGGTAGAAGATATAATAGTGTTAATAACAGAAGCTTTGGGAACTCTCATACTGCTACTAAAGCCGGTTCGAGGGATGTTCATCGTATGCCAATGCTTGGTTCTAATGATATTTATACAGATGGAAATAGCTATAGAGAGAAACCAGAAAGAAAAGGACTTAGAGCAGTTGCAATTGTGGATGTAAAGTGCAATAACCCTGATAGAGCTTGGGCTAGCCGCCCTCTATCAAGTCGACTTAGAAAACTCGGTTTTTCAAAGCTATCAGAAACCTTTGCTTGA

mRNA sequence

ATGGTTCAGAAACTGCAATCTATCAAAGGTGGTGGAGGGTCTATTAAGGTTGGAGCCACCGGAACGATTAGCTCCCTGATGATGAGGGAGTTAGAGACAATGAGATCCGGCCCCCAGAAGTCGGTAACTTCCAAAAACAAATCTTCATCTGCTGCTACTGTTTCATCTGCTGCTTCTGTTCCTAAAAGACTACAACAAAGTAAATCATTTGATGAGGTAAACAATGGTAGAAGATATAATAGTGTTAATAACAGAAGCTTTGGGAACTCTCATACTGCTACTAAAGCCGGTTCGAGGGATGTTCATCGTATGCCAATGCTTGGTTCTAATGATATTTATACAGATGGAAATAGCTATAGAGAGAAACCAGAAAGAAAAGGACTTAGAGCAGTTGCAATTGTGGATGTAAAGTGCAATAACCCTGATAGAGCTTGGGCTAGCCGCCCTCTATCAAGTCGACTTAGAAAACTCGGTTTTTCAAAGCTATCAGAAACCTTTGCTTGA

Coding sequence (CDS)

ATGGTTCAGAAACTGCAATCTATCAAAGGTGGTGGAGGGTCTATTAAGGTTGGAGCCACCGGAACGATTAGCTCCCTGATGATGAGGGAGTTAGAGACAATGAGATCCGGCCCCCAGAAGTCGGTAACTTCCAAAAACAAATCTTCATCTGCTGCTACTGTTTCATCTGCTGCTTCTGTTCCTAAAAGACTACAACAAAGTAAATCATTTGATGAGGTAAACAATGGTAGAAGATATAATAGTGTTAATAACAGAAGCTTTGGGAACTCTCATACTGCTACTAAAGCCGGTTCGAGGGATGTTCATCGTATGCCAATGCTTGGTTCTAATGATATTTATACAGATGGAAATAGCTATAGAGAGAAACCAGAAAGAAAAGGACTTAGAGCAGTTGCAATTGTGGATGTAAAGTGCAATAACCCTGATAGAGCTTGGGCTAGCCGCCCTCTATCAAGTCGACTTAGAAAACTCGGTTTTTCAAAGCTATCAGAAACCTTTGCTTGA

Protein sequence

MVQKLQSIKGGGGSIKVGATGTISSLMMRELETMRSGPQKSVTSKNKSSSAATVSSAASVPKRLQQSKSFDEVNNGRRYNSVNNRSFGNSHTATKAGSRDVHRMPMLGSNDIYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Homology
BLAST of Lag0038023 vs. NCBI nr
Match: XP_004149171.1 (uncharacterized protein LOC101215948 [Cucumis sativus] >XP_004149172.1 uncharacterized protein LOC101215948 [Cucumis sativus] >XP_004149173.1 uncharacterized protein LOC101215948 [Cucumis sativus] >XP_004149174.1 uncharacterized protein LOC101215948 [Cucumis sativus] >KGN57999.1 hypothetical protein Csa_010222 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 6.5e-71
Identity = 150/170 (88.24%), Postives = 157/170 (92.35%), Query Frame = 0

Query: 1   MVQKLQSIKGGGGSIKVGATGTISSLMMRELETMRSGPQKSVTSKNKSSSAA---TVSSA 60
           MVQKLQ IKGGGGS+KVGATGTISSLMMRELE+MRS  +K VTSKNKSSSAA   TVSSA
Sbjct: 1   MVQKLQPIKGGGGSVKVGATGTISSLMMRELESMRSASKKPVTSKNKSSSAATTTTVSSA 60

Query: 61  ASVPKRLQQSKSFDEVNNGRRYNSVNNRSFGNSHTATKAGSRDVHRMPMLGSNDIYTDGN 120
           AS+PKRL QSKSF EV++ RRYNSVNNRSFGNSH ATK GSRDVHRMPML SND+YTDGN
Sbjct: 61  ASIPKRLGQSKSFVEVSD-RRYNSVNNRSFGNSHNATKTGSRDVHRMPMLSSNDVYTDGN 120

Query: 121 SYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 168
           SYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Sbjct: 121 SYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 169

BLAST of Lag0038023 vs. NCBI nr
Match: XP_022139743.1 (uncharacterized protein LOC111010581 [Momordica charantia])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 148/171 (86.55%), Postives = 156/171 (91.23%), Query Frame = 0

Query: 1   MVQKLQSIKGGGGSIKVGATGTISSLMMRELETMRSGPQKSVTSKNKSSSAAT---VSSA 60
           M QKLQSIKGGGGSIKVGATGTISSLMMRELE+MRSGPQKSV SKNKS S+ T    SSA
Sbjct: 1   MAQKLQSIKGGGGSIKVGATGTISSLMMRELESMRSGPQKSVASKNKSLSSTTTTSTSSA 60

Query: 61  ASVPKRLQQSKSFDEVNNGRRYNSVNNRSFGNSHTATKAGSRDVHRMPMLGSNDIYTDG- 120
           AS+PKRLQQS+S DEV+NGRRYNSVNNRSFGNSH +TK  SRDVHRMPMLGSND YTDG 
Sbjct: 61  ASIPKRLQQSRSLDEVSNGRRYNSVNNRSFGNSHNSTKTSSRDVHRMPMLGSNDNYTDGN 120

Query: 121 NSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 168
           NSYR KPERKGLRAVAIVDVKCNNPDRAWASRPLS+RLRKLGF+KLSETFA
Sbjct: 121 NSYRGKPERKGLRAVAIVDVKCNNPDRAWASRPLSNRLRKLGFAKLSETFA 171

BLAST of Lag0038023 vs. NCBI nr
Match: XP_008454517.1 (PREDICTED: uncharacterized protein LOC103494914 [Cucumis melo] >KAA0053111.1 uncharacterized protein E6C27_scaffold778G00440 [Cucumis melo var. makuwa] >TYJ95486.1 uncharacterized protein E5676_scaffold441G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-70
Identity = 149/171 (87.13%), Postives = 155/171 (90.64%), Query Frame = 0

Query: 1   MVQKLQSIKGGGGSIKVGATGTISSLMMRELETMRSGPQKSVTSKNKSSSA----ATVSS 60
           MVQKLQ IKGGGGSIKVGATGTISSLMMRELE+MRS  +K VTSKNKSSSA     TVSS
Sbjct: 1   MVQKLQPIKGGGGSIKVGATGTISSLMMRELESMRSASKKPVTSKNKSSSATTTTTTVSS 60

Query: 61  AASVPKRLQQSKSFDEVNNGRRYNSVNNRSFGNSHTATKAGSRDVHRMPMLGSNDIYTDG 120
           A S+PKRL QSKSF EV++ RRYNSVNNRSFGNSH ATK GSRDVHRMPML SND+YTDG
Sbjct: 61  ATSIPKRLGQSKSFVEVSD-RRYNSVNNRSFGNSHNATKTGSRDVHRMPMLSSNDVYTDG 120

Query: 121 NSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 168
           NSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Sbjct: 121 NSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 170

BLAST of Lag0038023 vs. NCBI nr
Match: XP_038899712.1 (uncharacterized protein LOC120086960 [Benincasa hispida] >XP_038899713.1 uncharacterized protein LOC120086960 [Benincasa hispida] >XP_038899714.1 uncharacterized protein LOC120086960 [Benincasa hispida] >XP_038899715.1 uncharacterized protein LOC120086960 [Benincasa hispida] >XP_038899716.1 uncharacterized protein LOC120086960 [Benincasa hispida])

HSP 1 Score: 272.3 bits (695), Expect = 2.7e-69
Identity = 146/167 (87.43%), Postives = 152/167 (91.02%), Query Frame = 0

Query: 1   MVQKLQSIKGGGGSIKVGATGTISSLMMRELETMRSGPQKSVTSKNKSSSAATVSSAASV 60
           MVQKLQ  KGGGGSIKVGATGTISSLMMRELE+MRSGP+K V SKNKS      SSAASV
Sbjct: 1   MVQKLQPTKGGGGSIKVGATGTISSLMMRELESMRSGPKKPVNSKNKS------SSAASV 60

Query: 61  PKRLQQSKSFDEVNNGRRYNSVNNRSFGNSHTATKAGSRDVHRMPMLGSNDIYTDGNSYR 120
           PKRLQQSKSF+EV+N R YNSVN+RSFGNSH ATK GSRDVHRMPML SND+YTDGNSYR
Sbjct: 61  PKRLQQSKSFEEVSN-RSYNSVNSRSFGNSHNATKIGSRDVHRMPMLSSNDVYTDGNSYR 120

Query: 121 EKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 168
           EKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA
Sbjct: 121 EKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSETFA 160

BLAST of Lag0038023 vs. NCBI nr
Match: XP_022976588.1 (uncharacterized protein LOC111476940 [Cucurbita maxima] >XP_022976589.1 uncharacterized protein LOC111476940 [Cucurbita maxima] >XP_022976590.1 uncharacterized protein LOC111476940 [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-67
Identity = 148/183 (80.87%), Postives = 155/183 (84.70%), Query Frame = 0

Query: 1   MVQKLQSIKGGGGSIKVGATGTISSLMMRELETMRSGPQKSVTSKNKSSSAA-TVSS--- 60
           MVQKLQ IKGGGGSI VGATGTISSLMMRELE+MRS P+K V SK KSSSA  TVSS   
Sbjct: 1   MVQKLQPIKGGGGSINVGATGTISSLMMRELESMRSVPKKPVASKIKSSSATRTVSSAAS 60

Query: 61  ------------AASVPKRLQQSKSFDEVNNGRRYNSVNNRSFGNSHTATKAGSRDVHRM 120
                       AAS+P RLQQSKSFDEV+N RRYN+VNNRSFG SH ATKAGSRDVHRM
Sbjct: 61  IPNRLHQSKSFDAASIPNRLQQSKSFDEVSN-RRYNTVNNRSFGKSHNATKAGSRDVHRM 120

Query: 121 PMLGSNDIYTDGNSYREKPERKGLRAVAIVDVKCNNPDRAWASRPLSSRLRKLGFSKLSE 168
           PMLGSND+YTDGNSYREKPERKGLRAV IVDVKCNNPDRAW+SRPLSSRLRKLGFSKLSE
Sbjct: 121 PMLGSNDVYTDGNSYREKPERKGLRAVPIVDVKCNNPDRAWSSRPLSSRLRKLGFSKLSE 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004149171.16.5e-7188.24uncharacterized protein LOC101215948 [Cucumis sativus] >XP_004149172.1 uncharact... [more]
XP_022139743.11.1e-7086.55uncharacterized protein LOC111010581 [Momordica charantia][more]
XP_008454517.15.5e-7087.13PREDICTED: uncharacterized protein LOC103494914 [Cucumis melo] >KAA0053111.1 unc... [more]
XP_038899712.12.7e-6987.43uncharacterized protein LOC120086960 [Benincasa hispida] >XP_038899713.1 unchara... [more]
XP_022976588.13.3e-6780.87uncharacterized protein LOC111476940 [Cucurbita maxima] >XP_022976589.1 uncharac... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..95
NoneNo IPR availablePANTHERPTHR36405BNAA10G09140D PROTEINcoord: 1..167
NoneNo IPR availablePANTHERPTHR36405:SF1BNAA10G09140D PROTEINcoord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0038023.1Lag0038023.1mRNA