Lag0037995 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037995
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionthioredoxin-like protein CXXS1
Locationchr2: 11420815 .. 11422222 (+)
RNA-Seq ExpressionLag0037995
SyntenyLag0037995
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGCCAGAAAAAGCTTGTGAAGAAGACAAGAGTAATCAAAGTTGGCTCAGAGGAATTATGGGATTATTATGTTAAAAAGCTTTCAAACAAGGCTGCCCTGTGAGTCCCCCTCTTTACTTTTCATCTTCATGCTCTCAGTTCAATGTTTGGTAAATTAGTAATGTGGAAATGAAATGATATCCAAGGTACAAAGATTGAAATATTCATTTGCAATATTGCAGGTTGTAGTGCATTTTAGTGCTAGCTGGTGCACACCCTCAAGAGCCATGAACCCTTTCTTTGAAGAGCTGGCCTTGGTGTACAAAAGTGTTTTGTTTCTATCTGTGGATGTGGATGAAACTAAGGTAATTGTGATAATGTAAGCTTATGTGGATTATCTCTGAAATTTAACTTGATCTTAAAATTATTAACTTAGGCTCTAGTTTGAGTTTGTGTGGAGAAAATACAAAAAAGAATAAACCAAGTAAGAAACACAATTTTAGATCAATCTGAGCTCTTGATTGTCCTTTGTGTAATGATAAGTCACCTCAAGAGTTATGATATAATATAACATAACTTCAAAGATATTAAGAGTTTGTTTGATCCTGTTTTTTTTTTCCCTTTTCTTTTTGATTTTTTAAGAATATGTTAGATAACAATTTCTCCTCTCTTATTCTCTCCTTTGTTGCTAAAAATATTAACATGCATTTATGAATCATTTTTGTTTCTTATTCTCTAAAACTCTCCTCTCTCCCACTCTCTTTAAATTGAATCTCTCCCACTCTCTATAAAGTGAAGTATTCAGAATTTTTACATCGTTTTGCTTTTATGTTATTGTTTATGCAATCTGTGAACCACCGTGGATTAATGTGGCGTTCATTAGTGCTGATGAAAAATGTAAAATGATTAGGTCACCTACCTAATATCTTACCGTTTTTTAGGTAACTAAGTGTAGTATGGATGGTTGTCTCATAAAATTAGTCAAGAGTGCAAGAAATTAATAAGGTGTTTGAAACATACTATATTGGCACTAAGGACATGTTTGGGAGTGATTTTCGAACGGTCAAAATCACTATTGTAATGTCTAAAATCATTAAAAAAAGGCATGACAAAAGTACTTTTGACCATTCTAAAATCACTTCCAAATATACCGTAAGAATCTTTGATGTCAAATGTTGTATGATCAAATAGTTGTCTTATATACATGCAATTTTGGGAAAAAAACAGAATGAAAGAAGTTTGTACTTTTCTTTTGTTGTGATCCAAAGTTCTTATCATATGATAAACAGGAAGTTGCATCCAAGTTGGAGATAAAGGCCATGCCCACATTTGTATTGATGAAGAATGGAGCCCCAAACTATATGGTTGTTGGAGCCAACCCAGTTGAGCTGAAGAAAAGGATCAAGGCCTTTATATATGGCTAA

mRNA sequence

ATGGACAGCCAGAAAAAGCTTGTGAAGAAGACAAGAGTAATCAAAGTTGGCTCAGAGGAATTATGGGATTATTATGTTAAAAAGCTTTCAAACAAGGCTGCCCTTGCTAGCTGGTGCACACCCTCAAGAGCCATGAACCCTTTCTTTGAAGAGCTGGCCTTGGTGTACAAAAGTGTTTTGTTTCTATCTGTGGATGTGGATGAAACTAAGGAAGTTGCATCCAAGTTGGAGATAAAGGCCATGCCCACATTTGTATTGATGAAGAATGGAGCCCCAAACTATATGGTTGTTGGAGCCAACCCAGTTGAGCTGAAGAAAAGGATCAAGGCCTTTATATATGGCTAA

Coding sequence (CDS)

ATGGACAGCCAGAAAAAGCTTGTGAAGAAGACAAGAGTAATCAAAGTTGGCTCAGAGGAATTATGGGATTATTATGTTAAAAAGCTTTCAAACAAGGCTGCCCTTGCTAGCTGGTGCACACCCTCAAGAGCCATGAACCCTTTCTTTGAAGAGCTGGCCTTGGTGTACAAAAGTGTTTTGTTTCTATCTGTGGATGTGGATGAAACTAAGGAAGTTGCATCCAAGTTGGAGATAAAGGCCATGCCCACATTTGTATTGATGAAGAATGGAGCCCCAAACTATATGGTTGTTGGAGCCAACCCAGTTGAGCTGAAGAAAAGGATCAAGGCCTTTATATATGGCTAA

Protein sequence

MDSQKKLVKKTRVIKVGSEELWDYYVKKLSNKAALASWCTPSRAMNPFFEELALVYKSVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFIYG
Homology
BLAST of Lag0037995 vs. NCBI nr
Match: XP_038899306.1 (thioredoxin-like protein CXXS1 [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 92/120 (76.67%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 1   MDSQKKLVKKTRVIKVGSEELWDYYVKKLSNKAA------LASWCTPSRAMNPFFEELAL 60
           M+ QKK+VKKTRVIKV SEE WD YV K S +         ASWCTPSRAM+PFFEELAL
Sbjct: 1   MERQKKIVKKTRVIKVVSEESWDCYVTKASKQGCPVIVHFSASWCTPSRAMSPFFEELAL 60

Query: 61  VYKSVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFIYG 115
            YKSVLFLSVDVDE KEVASKLEIKAMPTFVLMKNGAP Y +VGANPVEL+KRI  FIYG
Sbjct: 61  EYKSVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPEYKLVGANPVELRKRITGFIYG 120

BLAST of Lag0037995 vs. NCBI nr
Match: XP_023535143.1 (thioredoxin-like protein CXXS1 [Cucurbita pepo subsp. pepo] >XP_023535144.1 thioredoxin-like protein CXXS1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-40
Identity = 91/120 (75.83%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MDSQKKLVKKTRVIKVGSEELWDYYVKKLSNKAA------LASWCTPSRAMNPFFEELAL 60
           M+ QKK+VKKTRVIKV SEE WD YV K   +         ASWCTPSRAM+PFFEELAL
Sbjct: 1   MERQKKIVKKTRVIKVSSEESWDCYVTKAFKQGCPVVVHFSASWCTPSRAMSPFFEELAL 60

Query: 61  VYKSVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFIYG 115
            YK VLFLSVDVDE KEVASKLEIKAMPTFVLMKNGAPNY +VGANPVEL +RIK FIYG
Sbjct: 61  QYKYVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPNYKLVGANPVELSRRIKGFIYG 120

BLAST of Lag0037995 vs. NCBI nr
Match: XP_022976606.1 (thioredoxin-like protein CXXS1 [Cucurbita maxima] >XP_022976607.1 thioredoxin-like protein CXXS1 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 91/120 (75.83%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 1   MDSQKKLVKKTRVIKVGSEELWDYYVKKLSNKAA------LASWCTPSRAMNPFFEELAL 60
           M+ QKK+VKKTRVIKV SEE WD YV K   +         ASWCTPSRAM+PFFEELAL
Sbjct: 1   MERQKKIVKKTRVIKVCSEESWDCYVTKAFKQGCPVVVHFSASWCTPSRAMSPFFEELAL 60

Query: 61  VYKSVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFIYG 115
            YK VLFLSVDVDE KEVASKLEIKAMPTFVLMKNGAPNY +VGANPVEL KRIK F YG
Sbjct: 61  QYKYVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPNYKLVGANPVELSKRIKGFTYG 120

BLAST of Lag0037995 vs. NCBI nr
Match: KAG6592016.1 (Kinesin-like protein KIN-14N, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 90/120 (75.00%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 1   MDSQKKLVKKTRVIKVGSEELWDYYVKKLSNKAA------LASWCTPSRAMNPFFEELAL 60
           M+ QKK+VKKTRVIKV SEE WD YV K   +         ASWCTPSRAM+PFFEELAL
Sbjct: 814 MEIQKKIVKKTRVIKVSSEESWDCYVTKAFKQGCPVVVHFSASWCTPSRAMSPFFEELAL 873

Query: 61  VYKSVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFIYG 115
            YK VLFLSVDVDE KEVASKLEIKAMPTFVLMKNGAPNY +VGANPVEL +RI  FIYG
Sbjct: 874 QYKYVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPNYKLVGANPVELSRRINGFIYG 933

BLAST of Lag0037995 vs. NCBI nr
Match: XP_008454556.1 (PREDICTED: thioredoxin-like protein CXXS1 [Cucumis melo] >KAA0046459.1 thioredoxin-like protein CXXS1 [Cucumis melo var. makuwa] >TYJ97753.1 thioredoxin-like protein CXXS1 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 92/119 (77.31%), Postives = 100/119 (84.03%), Query Frame = 0

Query: 1   MDSQKKLVKKTRVIKVGSEELWDYYVKKLSNKAA------LASWCTPSRAMNPFFEELAL 60
           M+ QKK+VKK RVIKVGSEE WDYYV K S +         ASWCTPSRAM+PFFEELAL
Sbjct: 1   MERQKKIVKK-RVIKVGSEESWDYYVTKASLQGCPAVVHFSASWCTPSRAMSPFFEELAL 60

Query: 61  VYKSVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFIY 114
            YKSVLFLSVDVDE KEVASKLEIKAMPTFVLMKNGAP++ +VGANP EL+KRIKAFIY
Sbjct: 61  EYKSVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPDHKLVGANPEELRKRIKAFIY 118

BLAST of Lag0037995 vs. ExPASy Swiss-Prot
Match: Q8LDI5 (Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana OX=3702 GN=CXXS1 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-24
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 12  RVIKVGSEELWDYYVKKLSNKAA------LASWCTPSRAMNPFFEELALVYKSVLFLSVD 71
           RV+K+ S E W++YV +  N+         A WC PS  MN FFEELA  YK  LFL VD
Sbjct: 3   RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVD 62

Query: 72  VDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFI 113
           VDE KEVAS+LE+KAMPTF+ +K+G     +VGANP E+KKR+  F+
Sbjct: 63  VDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVDGFV 109

BLAST of Lag0037995 vs. ExPASy Swiss-Prot
Match: Q0J9V5 (Thioredoxin-like protein CXXS1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0629500 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-19
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 0

Query: 4   QKKLVKKTRVIKVGSEELWDYYVKKLSNKAAL------ASWCTPSRAMNPFFEELALVYK 63
           Q+K V  ++V+KV  EE WD +V + SN+         ASWC  S +MN  FEELA  + 
Sbjct: 5   QQKGVGNSKVVKVEKEESWDLFVNQASNEGHPVVAHFGASWCVTSLSMNYKFEELAQTHP 64

Query: 64  SVLFLSVDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKA 111
            +LFL VDVD+ + V+SKL +KAMPTF L+K+      +VGANP E+KK + A
Sbjct: 65  EILFLYVDVDDVQSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPDEVKKMVDA 117

BLAST of Lag0037995 vs. ExPASy Swiss-Prot
Match: Q9USR1 (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=txl1 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-13
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 0

Query: 13  VIKVGSEELWDYYVKKLSNKA--ALASWCTPSRAMNPFFEELALVYKS--VLFLSVDVDE 72
           VI++ S + W   + K    A    A WC P +A++P F +LA  Y S   +F  V+VDE
Sbjct: 3   VIEIRSYQHWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDE 62

Query: 73  TKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRI 109
            +++AS L +KAMPTFV  +NG    M+ GANP  LK+++
Sbjct: 63  QRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102

BLAST of Lag0037995 vs. ExPASy Swiss-Prot
Match: Q851R5 (Thioredoxin H2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0800700 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.8e-13
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 11  TRVIKVGSEELWDYY---VKKLSNKAAL----ASWCTPSRAMNPFFEELALVYKSVLFLS 70
           +RV+ V S   WD      K   NK  +    A+WC P R + P F+++A  +   +F  
Sbjct: 21  SRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAVFFK 80

Query: 71  VDVDETKEVASKLEIKAMPTFVLMKNGAPNYMVVGANPVELKKRIKAFI 113
           +DVDE  EVA + +++AMPTFVL+K G     VVGA   EL++++  FI
Sbjct: 81  IDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFI 129

BLAST of Lag0037995 vs. ExPASy Swiss-Prot
Match: Q6Z4I3 (Thioredoxin H2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190800 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 19  EELWDYY--VKKLSNKAALASWCTPSRAMNPFFEELALVYKSVLFLSVDVDETKEVASKL 78
           +ELWD +    KL      ASWC P + M P F+E+A  +  V FL VDVDE  EVA   
Sbjct: 33  DELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVAFLKVDVDELAEVARTW 92

Query: 79  EIKAMPTFVLMKNGAPNYMVVGANPVELKKRI 109
            ++AMPTFVL + G     +VGA+  EL+K I
Sbjct: 93  RVEAMPTFVLARGGEEVGRIVGADKDELEKTI 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899306.11.8e-4076.67thioredoxin-like protein CXXS1 [Benincasa hispida][more]
XP_023535143.13.1e-4075.83thioredoxin-like protein CXXS1 [Cucurbita pepo subsp. pepo] >XP_023535144.1 thio... [more]
XP_022976606.11.2e-3975.83thioredoxin-like protein CXXS1 [Cucurbita maxima] >XP_022976607.1 thioredoxin-li... [more]
KAG6592016.11.5e-3975.00Kinesin-like protein KIN-14N, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_008454556.12.0e-3977.31PREDICTED: thioredoxin-like protein CXXS1 [Cucumis melo] >KAA0046459.1 thioredox... [more]
Match NameE-valueIdentityDescription
Q8LDI51.9e-2453.27Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana OX=3702 GN=CXXS1 PE=2 SV=... [more]
Q0J9V53.1e-1946.90Thioredoxin-like protein CXXS1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g... [more]
Q9USR17.5e-1341.00Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... [more]
Q851R59.8e-1338.53Thioredoxin H2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0800700 PE=2 S... [more]
Q6Z4I31.3e-1245.65Thioredoxin H2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0190800 PE=2 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 35..109
e-value: 1.0E-17
score: 64.0
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..113
e-value: 1.3E-24
score: 88.3
NoneNo IPR availablePANTHERPTHR10438THIOREDOXINcoord: 1..112
NoneNo IPR availablePANTHERPTHR10438:SF392THIOREDOXIN-LIKE PROTEIN CXXS1coord: 1..112
NoneNo IPR availableCDDcd02947TRX_familycoord: 36..109
e-value: 2.31067E-23
score: 84.1468
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 14..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037995.1Lag0037995.1mRNA