Lag0037994 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037994
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	chr2: 11412162 .. 11413016 (-)
RNA-Seq Expression	Lag0037994
Synteny	Lag0037994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTCTTGCAAACTTAAATGGCGTCTCAGAGAAATTCTCCGCCATTCCCAAGCTTCCAAAGCTTCAAAAGACTCACAAGAGAATGAAAATAACTGGGTTTCTCGAGAAACAAACACAAGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTCTAACCAGTCTTGTCTCTGTTGCCCTCTTTGGCAATGCATCGGTCGAGATCGTTTCCGCTAACGAGTACTGGCTCGATGGCCCTCTGCCCGTCCCTTCCGTTTACAATAGTAAGCTTTCTGTTTTCTGTGCTTTGAAAAATTCGAGTTGGTTTGGTTAGTTTGATGATGAATGTTGTTGAACTCGATTGGTGTTCGTGGTAGTTTATGATGAATTCTTTGTTACAGATATTGCGAACGAGAAAACGAGGACTCGGTCGTTTCTGAAGACGGGGATTTACATAGCTAACATAGGGACAGAAGGGAGAAAGTACAGATTGAAGAGATATGCCTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAGGATACTTTGAATTATGTAAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATCTCGGCAGCAGCGGACGGGGAGAAGCAGCCTCTCACTGATTTAGCTAACAGATTGTTCGACAACTTCGAAAAGGTAGAGAAGAAGAAAGCTTACAAACTCTGCAAAAAAGTCTGCAATTCTTCAAACTGAAGTAACTTCTTTGGTTTTTTGCAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAATCTTACTATCAACAGACAACACCTATACTTCAAGAAGTCATGGATAGAATGGCATAA

mRNA sequence

ATGGCTCGTCTTGCAAACTTAAATGGCGTCTCAGAGAAATTCTCCGCCATTCCCAAGCTTCCAAAGCTTCAAAAGACTCACAAGAGAATGAAAATAACTGGGTTTCTCGAGAAACAAACACAAGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTCTAACCAGTCTTGTCTCTGTTGCCCTCTTTGGCAATGCATCGGTCGAGATCGTTTCCGCTAACGAGTACTGGCTCGATGGCCCTCTGCCCGTCCCTTCCGTTTACAATAATATTGCGAACGAGAAAACGAGGACTCGGTCGTTTCTGAAGACGGGGATTTACATAGCTAACATAGGGACAGAAGGGAGAAAGTACAGATTGAAGAGATATGCCTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAGGATACTTTGAATTATGTAAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATCTCGGCAGCAGCGGACGGGGAGAAGCAGCCTCTCACTGATTTAGCTAACAGATTGTTCGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAATCTTACTATCAACAGACAACACCTATACTTCAAGAAGTCATGGATAGAATGGCATAA

Coding sequence (CDS)

ATGGCTCGTCTTGCAAACTTAAATGGCGTCTCAGAGAAATTCTCCGCCATTCCCAAGCTTCCAAAGCTTCAAAAGACTCACAAGAGAATGAAAATAACTGGGTTTCTCGAGAAACAAACACAAGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTCTAACCAGTCTTGTCTCTGTTGCCCTCTTTGGCAATGCATCGGTCGAGATCGTTTCCGCTAACGAGTACTGGCTCGATGGCCCTCTGCCCGTCCCTTCCGTTTACAATAATATTGCGAACGAGAAAACGAGGACTCGGTCGTTTCTGAAGACGGGGATTTACATAGCTAACATAGGGACAGAAGGGAGAAAGTACAGATTGAAGAGATATGCCTTTGATCTTCTGGCTATGGCGGATTTGATTGGGAAGGATACTTTGAATTATGTAAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTACGATTTCGACAATGTTATCTCGGCAGCAGCGGACGGGGAGAAGCAGCCTCTCACTGATTTAGCTAACAGATTGTTCGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAATCTTACTATCAACAGACAACACCTATACTTCAAGAAGTCATGGATAGAATGGCATAA

Protein sequence

MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVSVALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA

Homology

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BLAST of Lag0037994 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107
Identity = 204/218 (93.58%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVSEKFSAIPKL KLQKT KR KITG LEKQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEI SANEYWLDGPLP+PSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

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BLAST of Lag0037994 vs. NCBI nr
Match: XP_022940191.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 5.6e-107
Identity = 203/218 (93.12%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVSEKFSAIPKL KLQKT KR KI G LEKQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEI SANEYWLDGPLP+PSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 203/218 (93.12%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVS+KFSAIPKLPKLQ   KR+KI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEI SANEYWLDGPLPVPSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. NCBI nr
Match: KAG6607822.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.4 bits (1017), Expect = 1.6e-106
Identity = 203/218 (93.12%), Postives = 207/218 (94.95%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVSEKFSAIPKL KLQKT KR KITG LEKQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA VEI SANEYWLDGPLP+PSVYNNIANEKT TRSFLKTGIYIA IGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIAKIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. NCBI nr
Match: XP_022981605.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 4.8e-106
Identity = 202/218 (92.66%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVSEKFSAIPKL KL+KT KR KI G LEKQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEI SANEYWLDGPLP+PSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 130/223 (58.30%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQ--VSSHQISLTRRLALTSL 60
           MA   +LN ++    ++PKLP+ +KT K    +GF  ++T+       + +TRR+ L   
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKS---SGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  VSVAL---FGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTE 120
           VS+ L    G  +V +   N +W+DGPLP+P +YNNI NEKT TR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTD 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA  +KQPLTD
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of Lag0037994 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-15
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 42  VSSHQISLTRRLALTSLVSVALFGNASVEIVSANEYWLD-GPLPVPSVYNNIANEKT-RT 101
           V + Q   T R ++  LV+  L G + V+ V A+   +  GP P PS       + + + 
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 102 RSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 161
           R F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 162 DFDNVISAAADGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 218
           D + +IS+    EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of Lag0037994 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-12
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 52  RLALTSLVSVALFGNASVEIVSANEYWLD-GPLPVPSVYNNIANEKTRTRSF---LKTGI 111
           R ++  LV+  L G + V+ V A    +  G  P+PS      +   + R F   LK   
Sbjct: 60  RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRF 119

Query: 112 YIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAD 171
           YI  +       R K  A +++ +   I K    YV+  LRL+++++ YD + VISA   
Sbjct: 120 YIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPK 179

Query: 172 GEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
            EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L  V+ ++
Sbjct: 180 EEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Lag0037994 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 50  TRRLALTSLVSVALFGNASVE--IVSANEYWLDGPLPVPS--VYNNIANEKTRTRSF-LK 109
           T R A+  LV+  + G A  +  +  A +    GP P PS  +   + +++ R     L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 110 TGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISA 169
              Y+  +       R K  A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 170 AADGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
               EK+ L DL  +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of Lag0037994 vs. ExPASy Swiss-Prot
Match: Q0D5P8 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 50  TRRLALTSLVSVALFGNASVE--IVSANEYWLDGPLPVPS--VYNNIANEKTRTRSF-LK 109
           T R A+  LV+  + G A  +  +  A +    GP P PS  +   + +++ R     L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 110 TGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISA 169
              Y+  +       R K  A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 170 AADGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
               EK+ L DL  +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of Lag0037994 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.7e-107
Identity = 203/218 (93.12%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVSEKFSAIPKL KLQKT KR KI G LEKQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEI SANEYWLDGPLP+PSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.1e-107
Identity = 203/218 (93.12%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVS+KFSAIPKLPKLQ   KR+KI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEI SANEYWLDGPLPVPSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. ExPASy TrEMBL
Match: A0A6J1IZZ5 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480674 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.3e-106
Identity = 202/218 (92.66%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNGVSEKFSAIPKL KL+KT KR KI G LEKQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNASVEI SANEYWLDGPLP+PSVYNNIANEKT TRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Lag0037994 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.9e-102
Identity = 198/218 (90.83%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP LPKLQ  HKR+KITGFL+KQT VSSHQISLTRRLALTSLVS
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EI SANEYWLDGPLPVPSV NNI NE+T TRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of Lag0037994 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.7e-101
Identity = 197/218 (90.37%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP LPKLQ  HK++KITGFL+KQT VSSHQISLTRRLALTSLVS
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EI SANEYWLDGPLPVPSV NNIANE+T TRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           FDNFEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of Lag0037994 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-67
Identity = 130/223 (58.30%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLPKLQKTHKRMKITGFLEKQTQ--VSSHQISLTRRLALTSL 60
           MA   +LN ++    ++PKLP+ +KT K    +GF  ++T+       + +TRR+ L   
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKS---SGFACRRTEEFQEPDSVQITRRMTLGFA 60

Query: 61  VSVAL---FGNASVEIVSANEYWLDGPLPVPSVYNNIANEKTRTRSFLKTGIYIANIGTE 120
           VS+ L    G  +V +   N +W+DGPLP+P +YNNI NEKT TR+F+K G+Y+A+IGT+
Sbjct: 61  VSIGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTK 120

Query: 121 GRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTD 180
           GR YR+K+ AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA  +KQPLTD
Sbjct: 121 GRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 219
           LANRLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 LANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of Lag0037994 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-17
Identity = 57/180 (31.67%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 42  VSSHQISLTRRLALTSLVSVALFGNASVEIVSANEYWLD-GPLPVPSVYNNIANEKTRTR 101
           V + Q   T R ++  LV+  L G + V+ V A+   +  GP P PS      +   + R
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQAR 102

Query: 102 SF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYD 161
            F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ YD
Sbjct: 103 DFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYD 162

Query: 162 FDNVISAAADGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
            + +IS+    EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 163 LNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of Lag0037994 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-16
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 42  VSSHQISLTRRLALTSLVSVALFGNASVEIVSANEYWLD-GPLPVPSVYNNIANEKT-RT 101
           V + Q   T R ++  LV+  L G + V+ V A+   +  GP P PS       + + + 
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 102 RSF---LKTGIYIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 161
           R F   LK   Y+  +       R K  A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 162 DFDNVISAAADGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 218
           D + +IS+    EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of Lag0037994 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-13
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 52  RLALTSLVSVALFGNASVEIVSANEYWLD-GPLPVPSVYNNIANEKTRTRSF---LKTGI 111
           R ++  LV+  L G + V+ V A    +  G  P+PS      +   + R F   LK   
Sbjct: 60  RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRF 119

Query: 112 YIANIGTEGRKYRLKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAD 171
           YI  +       R K  A +++ +   I K    YV+  LRL+++++ YD + VISA   
Sbjct: 120 YIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPK 179

Query: 172 GEKQPLTDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 218
            EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L  V+ ++
Sbjct: 180 EEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

The following BLAST results are available for this feature:

BLAST of Lag0037994 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015220.1	3.3e-107	93.58	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]
XP_022940191.1	5.6e-107	93.12	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita mosch...	[more]
XP_022139520.1	1.3e-106	93.12	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara...	[more]
KAG6607822.1	1.6e-106	93.12	Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurb...	[more]
XP_022981605.1	4.8e-106	92.66	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxim...	[more]

BLAST of Lag0037994 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	2.3e-66	58.30	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	3.1e-15	31.49	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41932	2.4e-12	30.59	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	1.3e-10	29.48	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
Q0D5P8	1.3e-10	29.48	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of Lag0037994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHS2	2.7e-107	93.12	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1CCI9	6.1e-107	93.12	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A6J1IZZ5	2.3e-106	92.66	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L7N1	5.9e-102	90.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A5A7TX10	1.7e-101	90.37	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Lag0037994 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	1.6e-67	58.30	PsbQ-like 1	[more]
AT4G21280.1	4.4e-17	31.67	photosystem II subunit QA	[more]
AT4G21280.2	2.2e-16	31.49	photosystem II subunit QA	[more]
AT4G05180.1	1.7e-13	30.59	photosystem II subunit Q-2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 80..218 e-value: 1.5E-44 score: 153.7
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 108..218
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 25..218 e-value: 2.3E-54 score: 184.2
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..218
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037994.1	Lag0037994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity