Lag0037661 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0037661
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr2: 8102363 .. 8102764 (-)
RNA-Seq ExpressionLag0037661
SyntenyLag0037661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACCCTACTGTTCCTACCTTTCCCCCACCAAACCAAGTTGTTTCTTCACCGTACCCTATCCTCACTCCACCTCTCAATATCAAGCTCTCGGACTCGAACTATTTATTGTGGAAAAACCAACTTCTCAACCATATATTCGCATTCGACATGGAATCATTCATCAACGGCACTTCAGCTCCACAAAAATACTTGGATGCCGCTCAGAATCAGGTAAATCCTAACTTTCTTATATGGCAAAAGTATAATAGAACTCTAATGAGTTGGATTTATTCATCGCTGAATGAGGACAAGCTGGGTGAAATAATTGGCTGTGAAACGGCATTTGATATTTGGGAACACGTACGAATGGTTTATGAATCTTCTTCTACGACTCGCATAATGGGTCTTCGTTCGCAATAG

mRNA sequence

ATGTACCCTACTGTTCCTACCTTTCCCCCACCAAACCAAGTTGTTTCTTCACCGTACCCTATCCTCACTCCACCTCTCAATATCAAGCTCTCGGACTCGAACTATTTATTGTGGAAAAACCAACTTCTCAACCATATATTCGCATTCGACATGGAATCATTCATCAACGGCACTTCAGCTCCACAAAAATACTTGGATGCCGCTCAGAATCAGGTAAATCCTAACTTTCTTATATGGCAAAAGTATAATAGAACTCTAATGAGTTGGATTTATTCATCGCTGAATGAGGACAAGCTGGGTGAAATAATTGGCTGTGAAACGGCATTTGATATTTGGGAACACGTACGAATGGTTTATGAATCTTCTTCTACGACTCGCATAATGGGTCTTCGTTCGCAATAG

Coding sequence (CDS)

ATGTACCCTACTGTTCCTACCTTTCCCCCACCAAACCAAGTTGTTTCTTCACCGTACCCTATCCTCACTCCACCTCTCAATATCAAGCTCTCGGACTCGAACTATTTATTGTGGAAAAACCAACTTCTCAACCATATATTCGCATTCGACATGGAATCATTCATCAACGGCACTTCAGCTCCACAAAAATACTTGGATGCCGCTCAGAATCAGGTAAATCCTAACTTTCTTATATGGCAAAAGTATAATAGAACTCTAATGAGTTGGATTTATTCATCGCTGAATGAGGACAAGCTGGGTGAAATAATTGGCTGTGAAACGGCATTTGATATTTGGGAACACGTACGAATGGTTTATGAATCTTCTTCTACGACTCGCATAATGGGTCTTCGTTCGCAATAG

Protein sequence

MYPTVPTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTSAPQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ
Homology
BLAST of Lag0037661 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 7.6e-30
Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = 0

Query: 3   PTVPTF--PPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-S 62
           P  P F   PPN   ++P+P L  PLN+KL+D+N+LLWKNQLLN + A  +  +++GT  
Sbjct: 5   PPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTIM 64

Query: 63  APQKYLDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVY 122
            P ++LD  Q Q NP +  W++YNR LM WIYSSL+E+K+GE++  ET  DIW  +  VY
Sbjct: 65  PPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVY 124

Query: 123 ESSSTTRIMGLRSQ 134
           +S +T RIMGL+++
Sbjct: 125 DSKTTARIMGLKTE 138

BLAST of Lag0037661 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 20  PILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGT-SAPQKYLDAAQNQVNPNFLI 79
           P +  P  IKL   NYL+WKNQLLN I A  +E FI+G+   P ++ D A+  VN  ++ 
Sbjct: 46  PSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIA 105

Query: 80  WQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ 134
           WQ++NR +MSWIY+SL +  +G+I+G  +AF+IWE +  +Y SSS  +I  LR++
Sbjct: 106 WQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITELRAK 160

BLAST of Lag0037661 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 9   PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKY 68
           P P  + +SP    P +  PL +KL D NY++WK QLLN + A  +E F++G+   P ++
Sbjct: 31  PNPQIINTSPLLNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRF 90

Query: 69  LDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSST 128
           LD  Q Q NP F  WQ+YNR +MSWIY+S+NE  LG+I+G  +A  IWE +  +Y ++S 
Sbjct: 91  LDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASF 150

Query: 129 TRIMGLRS 133
             +  LR+
Sbjct: 151 AHLTELRT 158

BLAST of Lag0037661 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 114.4 bits (285), Expect = 7.6e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 9   PPPNQVVSSP---YPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFINGTS-APQKY 68
           P P  + +SP    P +  PL +KL D NY++WK QLLN + A  +E F++G+   P ++
Sbjct: 31  PNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRF 90

Query: 69  LDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSST 128
           LD  Q Q NP F  WQ+YNR +MSWIY+S+NE  LG+I+G  +A  IWE +  +Y ++S 
Sbjct: 91  LDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTSASQIWEALERLYAAASF 150

Query: 129 TRIMGLRS 133
             +  LR+
Sbjct: 151 AHLTELRT 158

BLAST of Lag0037661 vs. NCBI nr
Match: RVW56403.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-22
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 6   PTFPPPNQVVSSPYPILTPPLNIKLSDSNYLLWKNQLLNHIFAFDMESFING-TSAPQKY 65
           P F P   +  + YP L+ PL IKL ++N  LWKNQLLN I A  +E FI G T  P K+
Sbjct: 22  PIFSP--NITQANYPSLSQPLTIKLDETNLFLWKNQLLNVIIANGLEDFIEGETPIPAKF 81

Query: 66  LDAAQNQVNPNFLIWQKYNRTLMSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSST 125
           LD AQ QVNP F+ W++ N  +MSWIY SL    +G I+  +TA +IW  +  VY+S S 
Sbjct: 82  LDDAQLQVNPLFIQWERTNILVMSWIYYSLTPAMVGRIVEYKTAQEIWGALNRVYQSPSV 141

Query: 126 TRIMGLRSQ 134
           T ++ L SQ
Sbjct: 142 TTVLRLNSQ 148

BLAST of Lag0037661 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 28/107 (26.17%), Postives = 55/107 (51.40%), Query Frame = 0

Query: 29  KLSDSNYLLWKNQLLNHIFAFDMESFING--TSAPQKYLDAAQNQVNPNFLIWQKYNRTL 88
           KL+ +NYL+W  Q+      +++  F++G  T  P      A  +VNP++  W++ ++ +
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 89  MSWIYSSLNEDKLGEIIGCETAFDIWEHVRMVYESSSTTRIMGLRSQ 134
            S +  +++      +    TA  IWE +R +Y + S   +  LR+Q
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQ 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.17.6e-3048.51uncharacterized protein LOC111022315 [Momordica charantia][more]
PON47862.13.4e-2245.22hypothetical protein TorRG33x02_321990 [Trema orientale][more]
GFZ12741.14.5e-2242.97UBX domain-containing protein [Actinidia rufa][more]
GFY85402.17.6e-2242.97hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
RVW56403.19.9e-2247.29Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Q94HW22.5e-0726.17Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 79..132
e-value: 1.1E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 26..132
NoneNo IPR availablePANTHERPTHR47481:SF3GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 26..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0037661.1Lag0037661.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding